| mature miRNA: GGTCGAGCAGGAGCTCGAGCT species: Populus trichocarpa x Populus deltoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73934472|gb|DT517782.1|DT517782 WS02435.B21_E16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02435_E1 GGTCGAGCAGGAGCTCGAGCT EST sequence (targeted fragment marked with yellow): TATAGTATTGGTGGCCTTTGTTGCTTTTGTCCGTTGGAATGGGAGTGTAGTTCTTGGTGCAAAAGAAGCTCATGCAGTTTCTCCACATTTTGCACAGTTAATGTATTTTAGTCTGGTTTCTTCTCTGGCATTGGCTCCCCTGCATTTCTCTTTGGATCAAGCTGTGCATCTGTTTTGGTCATTCTGGAAGAAAAGGCCCCTTGGTTTTTGTCAATGGATAGTGGCTCTTACTGCCGGCTTTCTCTCTGTGCATTCTTACAGCATAGCTCATGCCTATCTCCTTGCTGACAATCGGCACTATACCTTTTATCTTTGGCGGAAGGTCATCCAATCTCATCAGTCAACGAAGTACCTTCTGGTCCCACTTTATGTCTATTCATGGTTTTCCATCTTCAGAGTATTGGGAAAGCTAGACCAAAAATTTGGGTATTGGCATATTTCTTGGCTACAGCTGCAGTTCTAGTTCCTGCTCCACTTATTGAATTCAGATACTATACCATACCATTCTACTTCTTGATGCTTCACTCCCATACGGTTGACATTCAAAGTTTGGTCCTCATCGGACTTGGATATGTGGTAACCAATGTTTTCACAATGTTTATGTTCTTGTTTAGGCCATTTAATTGGAGCCATGAGCCTGGGAAACAGAGGTTTATTTGGTAGATAGGTTATTGAGAAAAGAAATTATAAATTCACATACGATGTTTATCACTTGCTCACTGGTTAAGAGAATAGAAATGACCTCTATCTCTGTCCCTGTCCTGGTTCCTGGACTGTGATTCTGTGGACGCCGCGACCACTTTTGGTATTAGAGGGAAATGGCTTCAACTGTGATTTTAATGGTTTCAATTTATTCAATGAATTTACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73936615|gb|DT519925.1|DT519925 WS02446.B21.1_B04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02446_ GGTCGAGCAGGAGCTCGAGCT EST sequence (targeted fragment marked with yellow): CAAGAGATTGTGTGCCAGACATTCCTATAACTCTTACGCACCTCCATTTTCTCAACCTGATCGTCCAGCCCCATTTTCCTCTGGTTTCTTAGAGAGAGAAGAGAATGGGATGGGCCTCGTGCCGAATTCGGCACGAGGAAACATGGAAGTTAGTGATTCAGATTCTGAAAACTCAGCAGACTCAGACCAAGGGTACATGCCTTCAGATGTGCAATCTGACTCAGGTTCCGATGATGAAGATGATTTAAGTGAGTCTTTGGTGGAATCTGAGGATGATGAGGAAGAGGACTCTGAGGAAGACTCAGAGGAGGAGGAAGGAAAGACATGGGAAGAGTTGGAGAGGGAAGCAAGTTATGCTGACAGGGAAAAGGGGAATGATTCAGATAGTGAGGAGGAGAGAAAAAGAAGGAAGATCAAGGCATTTGGCAAGGCTCGAGAGCCAGCTCGAGCTCCCACTCGACCATCAGCTCGGCCACCAGCTCGAGCTCCTGCTCGACCATCAGCTAGGCCGCCAGCTCGGCCAGTAACCCGACAACCTGATAGAAGAAATGTGAGCAGCGGTCTTCACAAGAGACCCAAGCTAAGGTGACCAAAGGTGTCTATGCCTCTATGCCTTGTTAAACTAGCAGCTGCAGCTCTGTAGGTGGTAGTTACATAATCTAGCCAGAATAATGTCTCTTGCAAGGAAGCATATGTTTTGGATTTCTCTCCTCTCTGTTTCTTGGTATTGTTATTTTATATGCTCGTTGGACAAACTGGTTGGATTATAGACTCTTTACTTGTAAACTAGTTTTGAAACTCACAGCCATAACAATTCGTTTACTTGTAAATAGTGGAATCCAAATTCAGAGCTTTCCGTATATTTTTTCTGCTCCAAAAAAAAAAAAAAAAAA | |||||||||