| mature miRNA: TGACGGAGGCATTGACGGAGG species: Populus trichocarpa x Populus deltoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73934699|gb|DT518009.1|DT518009 WS02435.B21_P01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02435_P0 TGACGGAGGCATTGACGGAGG EST sequence (targeted fragment marked with yellow): AGCAGCAACAACAGCATAGGAGGAACTTGACGAGGTGGTGGTTTGTCAATGATAATCAACAAAAGAAGAACGGGTTAAAGAAGGCAAAATCGGCACGAGTTAGTCCAGTGAGTCGGAGAAAACTGAGTTTCAACAACGGAGAACGATCCAATTCTTTCGTAGGCACAGAGGAATATGTCTCGCCGGAGGTTGTAAGAGGGGATGGACACGAGTTCGCCGTTGATTGGTGGGCTCTTGGGATTTTGAGCTACGAGATGTTGTACGGGACGACGCCGTTCAAGGGGAAGAACAGAAAGGAAACGTTTCGAAACGTTTTGTTGAAGAAGCCTGAGTTTGTTGGGAAACGAAACGATTTAACGGACTTGATTGAGCGGCTGTTAGAGAAGGACCCCACACAGAGGTTGGGGTATCAACGTGGCGCTTGTGAGATTAAAGAGCATGGGTTTTTTAAAGGTGTTAGGTGGGACCTATTAACAGAAGTATTAAGACCGCCGTTTATTCCGTCAAGAGAGGACGGGGAGTTGACGGTAACGACAGGTGGGGTTGATATTAGGAAGTATTTTGAAGATTTAAGGGCGCCCCCTCCGTCAATGCCTCCGTCACCATCTTCGGATTGTCATAGGAAGTTGTCCGAGTTCTAACCCACACGTGTGGCAGATGGCATGTGAAAAAAAGTAGCATAGTTAATTTTTTTTCTTTTTAATTTCTGTATTTGTGTACATAAAATAAATGGGTTAGAACTTGAAAAACACTAGTCTTAGTGAAGAAGAAGAAGAAGATTACTTGTTACAAGCTATAAATAATAATTTTATACATTTATTTATAGTTTATAATTATAAAATCAATTTTATAAAAAAAAAAAAAAAAAA | |||||||||
gi|52536831|gb|CV283856.1|CV283856 WS0188.B21_H15 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides cDNA clone WS0188_H15 3' TGACGGAGGCATTGACGGAGG EST sequence (targeted fragment marked with yellow): GCATAGGAAAGAAAAGTAGCATAACATGTTTTCAGAGTACACAAGTAACAAGAAGAGGATCACATCAGCATCGCCTCGGAACTAAATAAATATTGTCACACCTTGGGTAAAGGACCAAGTCTAGTAGTAGAACGCCAATCGTAATTAAGGAAAACAAAAATAATACTCCATAGTAACCGAGCAAAGGATACGATGAACATTTGGCTCGAAACAATAAACAAGCCTCCTTGTCACCCATCCCCTCCTCTCTACAAGCTGCTGCTTTCTTCATCCTGGGGAAACCAAAATCACCCACTCGGCCTTGTCATACCCAACCATTATCCGAATTCATCCCTGTGATCTATCTCAACTCAATCCGACAACCCTGCCTTCTTCTTGAGGTGCGCCTTGAATTCCATAATGTCGCCCTCCCAACGGGTAACAGCTTGATTCTCACATACCCATATCTCCTGCGCTACCTGGTTTATGAGCCTGAAATCATGGCTAACAAGAACCAGACCCCCATCCCACTCTTTCAATGCCTCCGCCAGGGAGTCGATGGTCTCAATATCCAAATGGTTGGTTGGCTCATCCAGAAGGAGCATTTGGGGTTGCCTAAATGCCAGCCAAGCAAAAATCACCCTGCTCCTCTGCCCATCTGACAAATTACTCATGGGCATCACCTGGGCCTTGCCTGTCAACCCAAACTTCCCAATCGCTGCCCTCATTTTTTCTTCCTCATTCCCTGGATACTCTCTAATCATAAAAAGGAGAGCAGACAATTCTAAGTCTAGTTTATCAGTCAAGTGTTGATGAAATTGCGCAAT | |||||||||
gi|73934016|gb|DT517326.1|DT517326 WS02433.B21_P21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02433_P2 TGACGGAGGCATTGACGGAGG EST sequence (targeted fragment marked with yellow): AGAAAACTAAGCTTCAACAATGGAGAACGGTCCAACTCGTTCGTGGGCACAGAGGAATATGTCTCGCCGGAGGTTGTAAGAGGAGATGGGCACGAGTTCGCTGTTGATTGGTGGGCTCTTGGAATTTTGAGCTTCGAGATGTTATACGGGACGACGCCTTTTGTAGGGAAGAACCGGAAGGAAACGTTTCGAAACGTATTGGCCAAGAAGCCGGAGTTTATCGGGAAACGAAACGAGTTAACAGACTTGATTGAACGGCTGTTAGAGAAGGACCCCACACAAAGGTTGGGGTATCAACGTGGAGCTTGTGAGATTAAGGAGCATGTGTTTTTTAAGGGTGTAAGGTGGGACCTATTAACGGAAGTCCTAAGACCGCCGTTTATTCCGTCGAGAGACGACGGGGAGTTAACGGAGAGGGCAACGGCAGCTGGGGTGGATATAAGGGAGTATTTTAAAGATTTAAGGGCGCCACCTCCGTCAATGCCTCCGTCACCGTCTTCGGATTATTACATGAAATTGTCAGAATTCTGACCCACACGTGTGGCAGGTGGCACGTGAAAGATTTAGCACAGTTCATTTTCTTTTTTATGTACATAAAATAAATGGGTTAGAAATTGAAAAACACTAGTCGTAGTGAAGATGAAGATTAGCTGTTACAAGCTATAAATATATATATATATAGATTATTATAAAAATTTTAAGGATTATGAGTGGAAAAATTATAGGATATCTAAATGGGTCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52511383|gb|CV258408.1|CV258408 WS0249.B21_H08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0249_H08 TGACGGAGGCATTGACGGAGG EST sequence (targeted fragment marked with yellow): GGACGGGGAGTTGACGGTAACGCCAGGTGGGGTTGATTTTAGGAAGTATTTTGAAGATTTAAGGGCGCCCCCTCCGTCAATGCCTCCGTCACCATTTTTGGATTGTCATAGGAAGTTGTCCGAGTTTTAACCCCCACGTGTGGCAGATGGCATGTGAAAAAAAGTAGCATAGTTAATTTTTTTTCTTTTTAATTTCTGTATTTGGGTACATAAAATAAATGGGTTAGAACTTGAAAAACCCTAGTTTTAGTGAAGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAA | |||||||||