miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGCCATGCTGCACATGGAGCT
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52534581|gb|CV281606.1|CV281606 WS0182.B21_G01 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides cDNA clone WS0182_G01 3' 

TGCCATGCTGCACATGGAGCT
||||||||.|||| . .||||
ACGGTACGGCGTGAGGTTCGA

EST sequence (targeted fragment marked with yellow):
ACAGGGACCATGCTAGTGCATTGGATGCGAAAATCCCCTTTTTTCTGTAGTGACAGAGAATACATAATTGGTCGGCGAATATGGGAATCAGGCAGATCTTATTACTGTGTGACCAAGGGAGTACCCAGTTCTTCTGTCCCAAGGCGAGATAAACCAAGACGTGTTGACCTATACTACTCAAGTTGGTGCATTCGAGCAGTGGAATCAAGGAAAGGTGATGGCCAGTTGACATCTTGTGAGGTATTACTCTTCCATCATGAAGACATGGGCATCCCATGGGAAATCGCTAAGCTTGGAGTGCGGCATGGCATGTGGGGAACTGTCAAGAAGATTGAGCCTGGTTTACGTGCCTACCAAAGAACAAGAGCATCGGGAGTTACACTTTCTCGGCCTGCTTTCATGGCTCAGATTAACACCAAAATAAATCTAGAGTTGCTGAGATCCTTGGGAGATGATGAGGATTTGTCAGAGACTGAAGCAGCAACTGCTCCTGAGAAATCTTTGGGCAGGAACATACCAAAGCTTCTGATTGTTGGTGGAGCTATTGCACTCTTATGCGGTTTTGATAGAGGACTGTTGACCAAGGCATTTATATTCAGTGTGGGAAGAAGGTTTGGAAACATGGGAAAGAATGCTAAATTAAATGCTGGAAGTACTTGAAAGTTGAAAACCATTATTTTTCTCAATTCAATTTGAGAGATGCTCTATTTTTAACCTTGTTTCACTCTTCCCTTTCCAATGGTCGCGGGAGGTTATATTACTTTGTATAATACTTCAGAAACATAATGATGTTATGAGGATGTATATACTCAAGGCAGAAATTCTCTGCAATCAATGAAACCACAGAGTTCATGGTCTAAAAAAAAAAAAAAAAAA


gi|73929563|gb|DT512873.1|DT512873 WS02420.B21_H20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02420_H2 

TGCCATGCTGCACATGGAGCT
.||||||||||| ||||||
GCGGTACGACGTTTACCTCCT

EST sequence (targeted fragment marked with yellow):
GGCCCCACATGTTCGCCCAAGCCAAAGCAGCCTCCTCCATTTGCAGCATGGCGCTTCTCTCTCCTAGTCCCTCCGACCCACGTGTAATGGTGATACTCTCTCTCCGTGAGCAAGATCTGTCTGGAAATTTTCCTTGAATGGCAAATCAAGATCTGTCTAGAACCAAGAAGAACAGTTTTTAAAGACTAGGCGACTCTTCGTCCGATATTTAATATTTCGCTGTCTTTGGGATTAAAGTTTTTTCTTTTTCCCATGTTAACATGGATGTACAAATAAGCTGACAATAAAATCGAGAGATCTCATTATATTTAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA


gi|73903615|gb|DT506353.1|DT506353 WS0189.C21_F19 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides cDNA clone WS0189_F19 3' 

TGCCATGCTGCACATGGAGCT
||| |||||||||||| |||
ACGTTACGACGTGTACGTCGT

EST sequence (targeted fragment marked with yellow):
ACCAGACTTTAGCTTGAATGTAGATCTCATTGTTGATGCTGTTAGAAAGGAGAAACCCAAATGCATATTCTTAACATCACCAAACAATCCAGATGGGAGCATAATAAATGATGAAGATCTTCTGAAAATCCTTGAGCTTCCGATTTTGGTGGTGCTGGATGAAGCATACATTGAATTTTCAGGACTGGAATCTAGGATGAAGTGGGTGAAGAAGCATGATAATTTAATTGTTCTGCGGACATTTAGCAAAAGAGCAGGCTTAGCAGGACTCCGTGTTGGATATGGAGCATTTCCCTTGAGCATCATTGAGTATCTTTGGAGAGCTAAGCAGCCTTATAATGTTTCTGTTGCTGCTGAAGTTGCTGCATGTGCAGCATTGCAGAACCCTACATACCTTGAGGATGTCAAAAATGCTTTGGTAGAAGAGAGGGAAAGACTTTTTAAGTTTCTGCAGGAAGTGCCATTTCTCACACCATTTCCAAGTCATTCTAATTTCATTCTTTGTGAGGTTAAATCTGGAATGGATGCTAAGAAGCTCAAGGACGATCTTGCTAGTATGGGAGTGATGGTCCGTCACTACAATAAGAAAGAACTGAAGGGTTTCATTCGAGTATCTGTTGGAAAGCCTGAACAAACAGATATATTGATGCAGTGTCTTAAGCGCCTTTCTTGATTTAGTTCCCGTGTATTTGTTAAAAGGACCTGTTCGGAAGCCTGATCAAATAGAGTATCTGACATGGTATTTCTCTGGCCCCTTGTTTTTGAGTAATTTTGTAACAAACTGGAATTGCAATTTCATGGCCAGTGAATATTCTGGAATTCCAAAAGCTTATGGATTTCCCACGTTGTAAAAAAAAAAAAAAAAAA


gi|52510815|gb|CV257840.1|CV257840 WS0247.B21_M20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0247_M20 

TGCCATGCTGCACATGGAGCT
|||||||||||||||||||||
ACGGTACGACGTGTACCTCGA

EST sequence (targeted fragment marked with yellow):
TGCAAAGATGTGACAAATAAGGCTCATTGGACGGTGTTCTAGCTCCATGTGCAGCATGGCATGTACCGTAGCGTTGAATACACCAAAAATTATGTCCACCAACAAGTATACCATGCAACAGTATAGAGCAAGGACCAATTTTTGGTGAAACCTGCCCTTGTAATCATTCACGCCAACTGAGATGGTAAAAAGCAAGACTTTCGTCGCCAAATTCAGAGCTAATTTCGGTGGGTTTTGGGGTGTTTGAGAAGATGGGTACTTTTCATTTTGCTTTATTTTGATGGGAAGGAGAGCTTTAGAGATGAATTGAAGGAGGGAGTTGGATTGGTCACATGAAAGCGGACCGTGATCGAAGGCAAAGAGGGCAAGCTTGAAATTGGCTAACCAGGAGATGAACAAGGAGGCAATAGTATTTGGAAATAAGTAGGAGAAGAAGAGAGGAAGGGTTATGAAGAGGTAGAAAATGGGAAGGAGAGAGACAAGCCTAAGCTTACCTTTTGGGATCTTGGATGATATGAAATGACAGTAGATTAAAGATGCCAAAACTGAGAGAGATGCCTTGATCAAGTTCTTGATTTCCCCCTCCATTCTTGCCTGTTTGTGCGTTTTTCCGTTTTCAATAGCTTGTAATTTGTGTCTGCAAATGGCTTTTGATTTTGAGAATGTCACGATGACATATACCTCTTTGTTTTTTATTGATCATTCACCTTGGACAGCCCCGGTCTATTTGGTGCGCTGCCGACGTTCTTTAAAAAAAAAAAAAAAAAA