miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTATTAAACCCGGACCGGTCC
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73933633|gb|DT516943.1|DT516943 WS02432.B21_N17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02432_N1 

TTATTAAACCCGGACCGGTCC
||||||||||||||| ||.||
AATAATTTGGGCCTGCCCGGG

EST sequence (targeted fragment marked with yellow):
CCGGCCAGCCTCTAACGGCAAGGTCCCTCACTCTCTTTTCCTTTTTGCTGTTGTTAACACCAAAGGATGGTAGAGAAGATGATGAAATAAGAAGGGAGGCCGAAGGACAGAAACCACATTTGAAAAGGGGAAAAAAATCGGGTTTCATCCGGGTTCGCCCGGGTCGTCCGGGTTATGGGTCGACCCCCCGGGTCGACCCGGTTTTGCCGGGTTGTTGCACCAGCCGGTCTTTTAACAAACCCGAACCGGTCCAGGTCCCGGGTCGACCCGCCGGGCCGGTCCAGGTCCCGGGTCGACCCGCCGGGGCCCGTCCGGGTTTAATAACTATGACCGCACGCATCAAGCGTGCTGCTTTGCCCAGCCAGGTCGCTGGCTTGGGCCAGTGACCGGGCTGGGTTGCTGGGTCTAGCCCAAACCGTACAGATAGGCTAGATCCAGCCCAGTGTTTTTTTTTTTAAAAGAGTTGGCTAGGTTTGGACCTCTGGCGTAATCAGCCCTAATTATGTTGACTAAGAGTATTTGTCAAAGCATACCCTTATAATCCATGTATTTTATCCTCCTTTTAAAAAAAAAAAAAAAAAAAA


gi|73932429|gb|DT515739.1|DT515739 WS02429.B21.1_G07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02429_ 

TTATTAAACCCGGACCGGTCC
||||||||||||| ||||.||
AATAATTTGGGCCGGGCCGGG

EST sequence (targeted fragment marked with yellow):
GATTCTCTTAAGTTGAAGTATTTAAACCAAAAGGTTTTTTATCCCACATTGAAAAAACATGGTTTTTTTCATGGGAACATAGTGTATATATATGAAAGGGTTTCAAATCCCACATTGAAAAGATATCATGTTATCCTTTTAAGTTGAAGTATTTAAACCAAATGGTTTTTTATCCCACATTGAAAAAACATGGTTTTTTTCATGGGAACATAGTGTATATATATGAAAGGGCTTCAAATCCCACATTGAAAAGATACTATGTTATCCTTTTAAGTTGAAATATTTAAACCAAAAGATTTTTATCCCACATTGAAAAAACATGGTTTTTTTCATGGAAACATAGAGTATATATACTAATGGGTTTCAAATCCCACATTTGAAGAAAAAAAAAAAAAAAACCCGGGTCTCGTCCGGGTCTCGTCCGGGTCACCCGGGTTCCGGGTTGACCCGCCGGGTCACCCGGGTTTGGCCGGGCTGTTGCCACAGCCGGTCTTTTATTAAACCCGGACCGGTCCAGCCACCGGGTCGACCGGGTCCCGGGTCGACCCGCCGGGCCGGGCCGGGTTTAATAACTATGCCGTTGACTTGGCCCCGCCATTTACAAAAAAAAAAAAAAAAAA


gi|52507278|gb|CV254303.1|CV254303 WS0224.B21_L18 PTxD-ICC-A-12 Populus trichocarpa x Populus deltoides cDNA clone WS0224_L18 3' 

TTATTAAACCCGGACCGGTCC
||||||||||||| ||||.||
AATAATTTGGGCCGGGCCGGG

EST sequence (targeted fragment marked with yellow):
GAAGCAACCAAACACCCACACAAACCTAGAAATTGAAAACAGTCTGCTACCTGTTGCCTCTATCTCTCCTGAAACTGTGAATTTGATCTCTTTTAACCTTTAATTTCCTTCAAGTTACAGTCATCAATCGTCACTCCCCAACTCGATCAATGGGTGCTCATTGGTCTTCTTGAAACTCCCCAACTGTCGCAGCTTTCGATTGGGGGAGCCTCGAGCATCCAGTATATGACATTAAGGACTATTCCTCCATGGAGTAGTCCACTCATAGAACAAGCATGTAAGCGAAGCAAGAAAAGGCTTTCCATTTTTTAGATCTCTCATCTGGTCAACAGTACACATTCTTTTATTCAACAAATGCATCACATGCCTGGAACGAGTTCAAGGAGGAGGGCAGTCAGGGAGCACATGAAGGAGCTGCACTTTTCAGATCTCTCACCGGGTTTGCCCGGGTCTCCCGGGTCATGGGTCGACCCGCCGGGTCGACCGGGTTTTGCCGGGTTATTGTCCTGGCCGGTCTTTTATTAAACCCGAACCGGTCCAGCCACCGGGTCGACCGGGTCCCGGGTCGACCCGCCGGGCCGGGCCGGGTTTAATAACTATGACTTTACCCCTATGTGGGCCGACCTGGTGCGAGCGTGGATTAATCTAGACCAGCGTCCAGGATACCGCGAGATTTATACCAAAAAAAAATGAAACAAAAAAAAAAAAAAAAAA