miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCCACAGCTTTCTTGAACT
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52532868|gb|CV279893.1|CV279893 WS0133.B21_N18 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS0133_N18 3 

TTCCACAGCTTTCTTGAACT
 |||||||||| |||.|| |
CAGGTGTCGAACGAATTTTA

EST sequence (targeted fragment marked with yellow):
AAGTCCAAGAAACCCATTTATTCAATGAAGAAAGGACAGATTGTGAGAGTGGATAAAGAGAAGTACCTCAATAGCGTAAATTATCTATCTGTTGGGCATCCACCTTACTACAAGGGCTTGGACTACATTTATGAAGACCGTGGTGAGGTCTTGGATTTACGGATATTTGAGACTGGAGAGTATGCTCTTGTTTCATGGGTTGGAGTCCCCACTGCTCCGGCTTGGCTTCCAACAGACATGCTTATCAAGTCCGAGAAGCTGAATTACGAGAGATTGTGAGATTTAGGCTACTGAAGCAGAATCCTATCTTCTTTTACGATGCATGGAAATGGATTCCTGCGGATCACTATACCTTGCTCATCACCATCAAAAACTTATATTGTATGTTTCCAAATCAAGGCCATTAGATTAACTAGCTTACATCATTCATTTGATAATAAATATTGCAATGGTTTATTTATTTTAAGCAAGCTGTGGACCCAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA


gi|46839360|gb|CN520991.1|CN520991 GQ0107.B3_D06 GQ010 Populus trichocarpa x Populus deltoides cDNA clone GQ0107_D06 5', mRNA se 

TTCCACAGCTTTCTTGAACT
.|||| |||||.|||||| |
GAGGTTTCGAAGGAACTTCA

EST sequence (targeted fragment marked with yellow):
CAAAAGCGAATTATGGAAATTACCCCCTCTCCATCTCCTCCTCCTTCAGGGAGATTCAAACTTTTTGACCAATTAGAATTGCAAGAATTCAGCGACAAATACGTGATCAAATCTGTTGAATCTCCTAATCGTGGCTTCTCCATCAGTCGCCTCCACGGCGATATCCAGCCTCTTAATAATGATAATGATGGTGGTGGTTGTGATGAAAGTTCCGTTAGTCCGTCAAAAACCTCCGTAATTTACGGCGTCGTCGGCACAATTAGATTGGTCGTAGGAACGTACATGCTTGTGATAATTTCGCGGAAAGAAGTTGGAGAATTTCTTGGTTTTCCTGTTTTCCGAATTGCTGCGATGAAGTTTTTGCCTTGCAATGAGGCATTGAAGTTTTCTACTGCGCAAGAAAAAAGAGATGAGGCCTACTTTATGAATCTGTTGAAAGTGGTGGAGTCAACTCCAGGGCTGTATTATTCGTATGAGACGGATATAACTTTGAATTTGCAGCGAAGATGTAAATTAGCAGAAGGGTGGATGAGTAAACCGATTTGGAAATCAGCTGACCCTCGATTTGTTTGGAACAAAAGTCTTTTGGAAGAACTAATTGAGTTTAAGCTTGATGAGTTCATCATTCCTCTACTTCAAGGAAGCTTTGGAGCTGCACGGCTAAAGATNNNNNAGTCATCTGCCACAGTTACATTAGTTTCAAGAAGGTGTACTCGGCGTCTAGGGACACGAATGTNNANNAGAGGAGCNNNNNNNNNNNNNNNNNCTGNNNNC


gi|46840135|gb|CN521766.1|CN521766 GQ0114.B3_G21 GQ011 Populus trichocarpa x Populus deltoides cDNA clone GQ0114_G21 5', mRNA se 

TTCCACAGCTTTCTTGAACT
|.||||||||||||||| ||
AGGGTGTCGAAAGAACTCGA

EST sequence (targeted fragment marked with yellow):
GTTTAATCTCGCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATGTATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGGGAGAACATGGCAATTCAGGATTTTTTTGGGCTCTTTTCTTGCTGTTACGGTCAAGACCTCTCCTTTCCTTCATGGAATGCATACAAAAACCTTTCATCTTCTTCCTCCCTGTATGGATCGTGGATGAGCTCGTGCTTTGAAAGAAGAAGNACAACTACACCACAAATTAAAGCTAGCTNNNNNNGTGTTTATGGNNNNTCATAATTGNAGTNGGGGAAAAGANNTATANGATAAAAATAATGAAGCTTTG


gi|73924915|gb|DT508225.1|DT508225 WS02420.BR_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02420_G10 

TTCCACAGCTTTCTTGAACT
.||| |||||||||||||
GAGGAGTCGAAAGAACTTTT

EST sequence (targeted fragment marked with yellow):
TCTGAAGTTTCTCTCTCAACAAAGAACAAAACAAGGAAGCACCAAAACCAACAACTACAAGCAAGTACTACTACTACTACTAATTAATAACTGGAGCAGTGCTTGTCAATTGACACAGCACAGCCAAGCCAACCCAAACCCGTCTCTGTTACTACTTTCCTTGACCTGTAACTGGTGGGTGTTTCCTTTTCTCTTTCCTTTCTTTGGATCTGAAAAAGAATTCTCTAACTAGGGTTTGTCACAGGTTCCTCTCTAAATTTAGCAAAATGCCGCCTGTTTTACTCCACTCATGAGTGTCTTGGTTTTCTTTTATGCAGCACTAACCCAGTTCTTCTCTTTGTATGTTGGTTTATTCTCTGTAGCTATCCCTTTTCTTTTCCTGTTTTCTTAGCTTAAAATGGCAAGAGAGAGGATTCAGATAAAAAAGATCGATAACGCCACCGCTAGGCAAGTCACGTTTTCAAAACGAAGAAGAGGGCTTTTCAAGAAAGCTGAGGAGCTTTCAGTTCTCTGTGATGCTGATGTTGCTCTCATCATCTTCTCCTCCACTGGCAAGCTCTTTGAGTTCTCCAGCTCAAGCATGAAGGAAATACTGGAAAGGCATAATTTGCACTCGAAGAATCTTGAGAAGCTGGAGCAACCATCTCTTGAGTTGCAGCTGGTAGAAGACAGCACCTGCTCCAGGTTGAGTAAGGAAGTTGCGGAGAAAAGCCATCAGCTGAGGCAAATGAGAGGGGAAGATCTGCGAGGATTGGATATAGACGAATTGCTGCAGCTAGAGAAGTCTCTTGAGGCTG


gi|73924078|gb|DT507388.1|DT507388 WS02418.BR_C01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02418_C01 

TTCCACAGCTTTCTTGAACT
.|||| |||||.|||||| |
GAGGTTTCGAAGGAACTTCA

EST sequence (targeted fragment marked with yellow):
GGACGGATATAACTTTGAATTTGCAGCGAAGATGTAAATTAGCAGAAGGGTGGATGAGTAAACCGATTTGGAAATCAGCTGACCCTCGATTTGTTTGGAACAAAAGTCTTTTGGAAGAACTTATTGAGTTTAAGCTTGATGAGTTCATCATTCCTCTACTTCAAGGAAGCTTTGGAGCTGCACAGCTAAAGATAAAAGAGTCATCTGCCACAGTTACATTAGTTTCAAGAAGGTGTACTCGGCGTCTAGGGACACGAATGTGGAGGAGAGGAGCTAACCTTGAAGGAGACACTGCTAACTTTATTGAAACTGAGCAATTGCTGGAGCTTGAAGGTTACAGATCTTCATTGTTGCAGATTCGAGGTTCGATTCCCCTACTTTGGGAGCAGATTGTTGATTTGAGCTATAGACCATGTCTTAGAATCATTAGTCATGAGCAGACGTCAAAAGTTGTTGAGCGCCATTTCCATGATCTTTACCAACGATATGGGGATACCATGGCAGTTGACTTAACCAATAAACATGGTGATGAAGGTCAATTAAGCGCAGCTTATGCTGCTGAAATGCAAAAGCTTCCAAATGTGAGATATGTTCCGTTTGATTTTCATCATGTCTGTGGCAACTCAAACTTTGATAATCTTCAAATTCTATATAATCAAATCTTAGACGACTTCCAAAAGCAAGGATATATCCTCATAGACGCAGAAGGAAACATATTGGAAGAGCAGAAAGGCATTATTAGATCTAACTGCATTGACTGCTTGGATCGAACAAATGTTACCCAGAGTTTTCTGGGTCAGAAGTCTTTAACCATGCAATTGCAAAGAATAGGAGTGCTTTCTT


gi|73929531|gb|DT512841.1|DT512841 WS02420.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02420_G1 

TTCCACAGCTTTCTTGAACT
.||| |||||||||||||
GAGGAGTCGAAAGAACTTT

EST sequence (targeted fragment marked with yellow):
TTTCAAGAAAGCTGAGGAGCTTTCAGTTCTCTGTGATGCTGATGTTGCTCTCATCATCTTCTCCTCCACTGGCAAGCTCTTTGAGTTCTCCAGCTCAAGCATGAAGGAAATACTGGAAAGGCATAATTTGCACTCGAAGAATCTTGAGAAGCTGGAGCAACCATCTCTTGAGTTGCAGCTGGTAGAAGACAGCACCTGCTCCAGGTTGAGTAAGGAAGTTGCGGAGAAAAGCCATCAGCTGAGGCAAATGAGAGGGGAAGATCTGCGAGGATTGGATATAGACGAATTGCTGCAGCTAGAGAAGTCTCTTGAGGCTGGATTGAGCTGTGTGATAGAGAAGAAGGGTGAGAAGATTATGAACGAGATCACTGATCTTCAAAGAAAGGGAATGCAATTGATGGAAGAGAATGAGAGACTCAAACAGTAAGTGGTGGAGATATCTAATGGCCGAAAGCATGTTACAGCTGATTCAGAGAATGTTGGTTACGAGGAAGGGCAGTCATCAGAGTCCGTAACCAATGTCTGCAACTCAAATGGCCCTCTACATGATTATGAAAGCTCTGATACATCCCTCAAGTTGGGGTTGCCATTTTCAAACTGAATGGGAGATCGCAGGGAGATTTCTTCACCAGCAAATGCGGACACAAATAATTGCTTGTATATATAAATAGAACAGGAACATAACTCAGGCACATAGTACTTGTGTACCTTGGACAAGTGCGGGGAAACATTTCTGTTTCCTTTACCGGATGCTACTCATGGAGTTTCTCTTATTGTGTGCACAAGGGTTTGCAGCCCATTTTGTTGCATAAGGAAGAAGAACAGAAAAAAACCAAAAAAAAAAAAAAAAAA


gi|73928437|gb|DT511747.1|DT511747 WS02417.B21_F03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02417_F0 

TTCCACAGCTTTCTTGAACT
.|||| |||||| |..||||
GAGGTTTCGAAACAGTTTGA

EST sequence (targeted fragment marked with yellow):
GACTGAGTCCTGTAACTTACCATGCACTTATTCGAGGGTATTGCAAACTAGACCAGTTTGACAAAGCTTTGGAGTTGTTGGCAGAGATGGAGAAGTTTGGGGTTCAACCTAATGCAGATGAGTACAATAAGCTGATTCAATCTCTTTGCTTAAAGTCCTTAGATTGGGGAACAGCAGAGAAGCTGTTTGCAGAAATGAAGGAGAAAGGCTTGTATCTAAATTCAATCACCCGGAGCCTTATAACCGCAGTCAAGGAGCTGGAGCAGGAGGGGTTAGCAAAAGAAGTAAGCATTGAAGTGTGAATTTTTAGTGTGGTTATCTTGTGTAACTTTCAAATGTTCCAAGTCTTTACTTTGTAGTTAGTGTCTTGCCCTTTTCCATAAAATAACGAGTGAAACTCTACAGTTCAATTTAAAAAAAAAAAAAAAAAAAA


gi|73932386|gb|DT515696.1|DT515696 WS02429.B21.1_E11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02429_ 

TTCCACAGCTTTCTTGAACT
.||||||||||.  ||||||
GAGGTGTCGAAGTTACTTGA

EST sequence (targeted fragment marked with yellow):
ACAACAGGTAGCAGCTGATCTCTTGAAGCAATACAAGGAGAAGTTCCAAGGTGGGACTCTGGCTGTTACCTGGAACTATTTGAGAGAATCGATGAACACATACCTCTCTCAGCCAAATCCTGTAACATCACGTTGGGAAGGTGCAGAACACTTGCAAGACCCTAAATTCCAGTTAGATGCCTTCAGATACCGGACATCTAGATTGCTTCAAAGTGCTGCTGTCCGACTTCGCAAGCACTCTAAAACTCTTGGGGGCTTTGGAGCTTGGAATCGATGCTTGAATCACCTTCTCACGCTTGCAGAGTCCCATATTGAGTCTGTCATCCTTGCAAAGTTCATTGAAGCTGTGGAGAAATGCCCTGATGCAAGTTCGCAGGCTGCTTTGAAACTTGTCTGCGATCTTTATGCCTTGAATCGAATCTGGAATGACATAGGAACCTATCGAAACGTTGACTATGTGGCACCAAACAAAGCTAAGGCAATCCACAAGCTCACAGATTACCTAAGTTTCCAAGTGAGAAATATTGCGAAGGAGCTTGTTGACGCATTTGATCTTCCTGATCACGTTACAAGGGCCCCAATTGCCATGCAGTCGGAAGCATATGCTCGGTACACGCACCATGTTGGGTTCTGATTTCAATAGAAAGCAAAGGGCAGTGAAGGATAAAGAGCTTGTGTGAGAGTACATTCCATATTACTTTTTAAAGTGATTTTTATTTGTAAATATATTAAAATAATATTTTTTTTATTTTTAAAATACAAAAAAAAAAAAAAAAAA