miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTCCCGGAAATCACTTTCCG
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73899976|gb|DT502714.1|DT502714 WS0133.BR_P12 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS0133_P12 5' 

TTTCCCGGAAATCACTTTCCG
||||||.||||||||.|.  |
AAAGGGTCTTTAGTGGAGACC

EST sequence (targeted fragment marked with yellow):
TCCCGGTTGTCTTTTTTTTAGCTCGGTTTTGCGACTTTAGTGACAGATTCTCCCATTCTCGGCAAATGGATGGGTCATCTTACAGAGGCAGCAGTAGTGTGGATATTTATTTACAAAATTATAAGCTTGGTAAAACACTTGGAATCGGTTCCTTTGGCAAGGTGAAAATAGCAGAGCATGCTTTGACGGGGCACAAAGTTGCCATCAAGATACTTAACCGCCGTAAGATAAAAAACATGGATATGGAAGAAAAAGTGAGAAGAGAAATCAAAATCTTGAGATTGTTTATGCATCCTCACATTATACGACTTTATGAGGTTATAGAAACACCGACTGACATATATGTTGTCATGGAGCATGTGAAGTCTGGGGAGCTCTTTGATTATATCGTGGAGAAGGGTAGATTGCAGGAAGATGAGGCACGCAATTTCTTCCAGCAGATAATTTCTGGTGTGGAATATTGCCACAGGAATATGGTTGTTCACAGAGACCTTAAGCCTGAGAATTTGTTATTGGATTCTAAATGGAATGTGAAGATAGCTGATTTTGGGCTGAGCAATATAATGCGAGATGGTCATTTTCTAAAGACAAGCTGTGGAAGCCCAAACTATGCCGCCCCAGAGGTGATTTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTATGGAGCTGCGGTGTTATATTGTATGCTCTTCTCTGCGGCACACTACCTTTCGATGATGAAAACATTCCCAACCTCTTTAAGAAAATAAAGGGTGGGATATACACTCTTCCCAGCCATTTATCACCT


gi|52508513|gb|CV255538.1|CV255538 WS02414.B21_E20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02414_E2 

TTTCCCGGAAATCACTTTCCG
|||||||.|||.|| ||||||
AAAGGGCTTTTGGTTAAAGGC

EST sequence (targeted fragment marked with yellow):
CTCTCAGTTCAAGCATGTTCTTCCCAAGCATGTCATCAGAGATGTACACACAGGGGGCCATTGTGTTGAATTGCAGAAAGAATCTTGAGAAATTGTCCAAATTTCTAGATTGTCAAGACCATATTATCATGTCAAAGAGAGGAAGGCCGTGGGTGGTAACTGAGAATCTGTCTGGGTATGATTCATTTGCAGTGTCAATTCAAAACTTGATGCATAAATATCAGGAGAATTGGCAGCATAAAAGTACTGGCCATGCTTTAAAAGTTGTTTGTCCTGGATCTGAGGAATACACGACTGCAAAGCAGCTGAGAGATCTATTCATGGAGTTCACTGAGCATCAACGGCGATTACACAAGAGGCTAGCGATGGAGGAGAGAAAGATCTTGCAGCCATCCCAAGTAGCATAGGTACTTGAATGCATACTGTATATAGGTCTGTCAACATTGTAAAGGAGAAGCTTACCGAAACTAAATGACACGTGATGGGAAAAAGGAAATTAACCTCCCTTGTTTAGGTGTTTCAAAGAGGGCTTTCGTTTTGTATCAGCAGACGGGCGTGTCAGTTTGTTAATTTTAAGGCTGTGTTTGTTTCCGGAAATTGGTTTTCGGGAAACTACTTTCCAAACTTTTTTGTGTAGAAAAGTTGGTCAACGGAAAACACTTTTCAATCAAAGAAAAATTTGGCTTGGTTTCCAAAAAAAAAAAAAAAAAA


gi|73935554|gb|DT518864.1|DT518864 WS02439.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02439_I1 

TTTCCCGGAAATCACTTTCCG
|||||||||||||||||||||
AAAGGGCCTTTAGTGAAAGGC

EST sequence (targeted fragment marked with yellow):
CAACTCAACAAGCAATTTCTACACCTGGGTTCTCTAGATTCTTCTCCAAATCGTCCTCTCGTTACATCGTGAAAGTTGGAATTCCAGAGTTTCTAAATGGAATAGGGAAAGGAGTTGAAGCCCATGTGGCCAAGCTTGAATCTGAAATTGGTGACTTTCACAAACTTCATGTTACTCGGACTTTAAAGCTCAAGAAACTAGGCATTCCTTGTCAACAGAGGAAAATGATATTGAAATATGCTCACAAGTATAGGTTGGGGCTGTGGAGGCCTAGAGCTGAACCTGTGAAAGCCAAATAAATCTCGGAATCATCTGTCATTTGGAGGATTACAAGGTGTTTGTCGTTAACATTCTTGCATGCAATTACGGTTGCAAAGAGTTTAGGTTTCATGAAGGCCATGTTTGTTTCCCGGAATTCACTTTTCGGGAAACCACTTTCCAAACTTTCCTGTGTTTATTTGCTATTAGGAAAGTTGGTCAACGGAAAACACTTTCCAGTCAACGGAAACACTTTTTGAATTTGGTTTGGTTTTCAGGAAAGTGTTTTTCCTTTTGGCTGTGTTTGTTTTCCGGAAAGTGATTTCCGGGAAACCACTTTCCAAACTTTCCTGTGTTTGTTTACCAGTAGAAAAGTTGGTCAACGGAAAACACTTTCCAGTCAAAGGAAAATTTGGCTTGGTTTTCAGGAAAGTGTTTTCCTGAAAAGGGGGAAAAAAAAAAAAAAAAAA


gi|52526863|gb|CV273888.1|CV273888 WS01712.B21_I05 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides cDNA clone WS01712_I05 3' 

TTTCCCGGAAATCACTTTCCG
||||| |||||||||||.| .
AAAGGCCCTTTAGTGAAGGTT

EST sequence (targeted fragment marked with yellow):
GAAGAAAGGAAAATGGCGACCAAAAACTTAACTCGAGCAGGAGCATCCCTAATGAACAGATTGATTATATCGAAGAACCCAATTTTACATCCAAACGCAGTCTCCACTCACCAAACACTAACTCCTCACCTTTTCCCTTTTTCTGTTTTCAACTTCCAGCCAACCGACTTCCTTTCAATCACTAAACTTGCAGTTGCCAATCAAGACTTTTTGCATCCTTCCGGTTTCCCCTCTCTCGAATTTTTTTTGCCCGACGGAGATTCATTTATTGAGCCTATGCTTTTGTTTCCTAAGAGGGCATTCCAGCCTAGTGTCTTCAGGCGCAAGAGAAAACCCGGGTTTTTTGCCCGCAAGGCAACCAAGGGTGGTCGGGGAGTAATTGCTCGGGGAATAGCAAAAGGCCGGTCAAGAGTTACTGTTTAGCTTTTCTGTTTATGCGTTGTGATGCGATGGGGGACAAGTTTGCCAGCAACCTTTGTTTTTTTTTATACCATGCAGTTTGTTGTTTTTTGGTGGCCTGCCCCTATGCTTTGTAGGAAAGTTTCAATGCATTTTAGAATCCGTACTTTTCCATATAATTTTTTCCCTGGGATTCCTGAGTTGAATTATTCCCAAGATGTATTTGGAAGTGATTTCCCGGAAAAGTAATTGCGTTTTTTTTTTTTTTGTTTTGTACCCAATGGCCTGCAATAATGTTGTCAAGAAGAAATAGGGGCTTTATGTTTCAATTGCGTTAATGAAATTCAGTTACTTGATTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAAA