miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGAATCTTGATGATGCTCCAC
species: Populus trichocarpa x Populus nigra
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73938479|gb|DT521789.1|DT521789 WS02035.B21_D18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02035_D18 3', 

TGAATCTTGATGATGCTCCAC
|||||||||||||||||||||
ACTTAGAACTACTACGAGGTG

EST sequence (targeted fragment marked with yellow):
TCCTTTCATTCTAGTTTTTTTTTTAATAATATTCTCATAAAGGTTTGATGAGCTGATGTAGCTAAAAGAAGTGAAAAAACCAAATGGGTTCTCTTTCTTTTTATGTGATCTTCGCCGGAAGCTGACATGAGGTGGTACTTGCTATATGTTAGTCTCACCACACACAACCAGAGGGAGTGTGTTTTTGTCAGAATCTCGCCGGATAAATAAATCTGATCCACTTAACTAAAAATCTATGATTTCCCAAAGTACTAAAACTCGTTAGTTCTTGATTCCATTTATTAGATTTTCTTTCTTTCTTTTTCTCATCTGATATAAAAAAATATTATTATATTTTTAATGTTGAAAAAGGGTTTTGTCTTGTTTTAAAGTTCTGAGTTAAACAAGGTTGTAGGATTCTTTCTCGGGCATCCCCTTCACGTATTGCCTTTTGGCCTTAACCAATGGCAACATGCCACATCAGCTCCTTGCTCGTGGGTTTGTTGGTTTGCATATGTGCTGTCCAATATTTCTTTGTTTTTCTCAATTTTTTTCCTTACAAGAATTTGCTAGATATATATTATATGTTTGCTTAATTTCAATCTTGAAACCTTGTAGAGAGGAGGTAAAAAGATGGGGCATGGAATTGAAGGCTAAAGGGGTCTTGTGCATGGAAATATTGACAATCGTTGTTTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGAGATGTTAGAGTTAAATCTCTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTGGAAGTGAGAATCTTGATGATGCTGCATCGGCAATAAACGACTATACAACACAAAAGGACTTGGAAAAAAAAAAAAAAAAAA


gi|52524330|gb|CV271355.1|CV271355 WS0154.B21_H16 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA clone WS0154_H16 3', mRNA 

TGAATCTTGATGATGCTCCAC
 |||||.|||||||||| ||
TCTTAGGACTACTACGACGTC

EST sequence (targeted fragment marked with yellow):
AGATCGAAGCTGCAAGGGCCTATGACAGAGCTGCAATGAAGTGCAATGGCAAAGAGGCAGTGACCAACTTTGATCCCAGCATTTATGAAAACGAGCTTGGTAAGCAATTTAATTCGGAGGATATCCAGGGTTTATTCAATCATTATTCAATTGATTCATATTTATTCAACTAATTAATTATGTATGAGTTGATTAGAATCATCAGGGAATGCTGTGGCTCACAACCTTGATTTGAGCTTGGGCAATCCAGCTTCAAAGCAAAGTAGTATAGAATTTGGTCAGGATAGGCACAAAGCTGCCATGGAGCAACTTTCAGCAGCAATGCCACTTGAACCCAATTGGCAAAATCGGGGGTTCAGGCCCAAGCTTGACCTGTATAGGGGCGACAACGATGGACATGGAAGAGATGGGTATCGGGAGACCGAAACGACTCAGCTTCTTAGCAAAATCCACATTCAATCTCTAGCATCACTCAAGTCTAGTGAAATGCCAACATATGTGCAGTTCAGGAGATCGCATGGAGATGGTCAGATGCTTCATGTTCTTCCCCCACAGTTCAATCCACCAAATTATCAAGTCCAGTATCCAAGCAGCAGTAGTGGAGGCCGAATCGGAAGTGATCTTTCCCTCTCTCCCACCGAGCTTCATCATCGTCATCATTATCAGCAATGGCAAGCAGGACCTCCCCAGTTTGCAAATGCTGCAGCATCATCAGGATTCTAACAGCAGATTAGGACTCCACAAAATTGGCTGCAGAAAAATGGGTTCGTCTCACGAGACCCTCTCAACCCATGTATAAAGTAGCCGTTCATCTTCCTTGCGAATGCAATCTTTCAATCCTTACCAAAAAAAAAAAAAAAAAA


gi|52521580|gb|CV268605.1|CV268605 WS0205.B21_P06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS0205_P06 3', m 

TGAATCTTGATGATGCTCCAC
 |||||.|||||||||| ||
TCTTAGGACTACTACGACGTT

EST sequence (targeted fragment marked with yellow):
AAGGCAGCCCTCGAGTTTATGGAAGAGAAGCAGTAACCAATTTTGAGCCTAGCGTTTATAAAGGAGATGTGATTTCTGATCCTAACAATGGAGGAAGCGGCCACAATCTTGATTTGAGTCTTGGAATTTCTCAGCCATCAAATGATCCTAAGGGGAATGACAGTGTGGGAGACTCCCATTGTCGTTATGGTGGTTGTGAAATACCCAGAAAAGAGAGACAAGTGGTGGAGGGCAGTACTGCTGCAGCACATATGGGCTTGCAAACCCTTCATGGTTCACCAATGGCATCAAAGAACCTTCCAGCATGGTCTGGCATATACCCTGGTTTATTATCAAGCTACGAGGAAAGGACTACAGAGAAGAAGGTTGAAGCTGTTTCTTCACCGAGATTCTCAAGCTGGCCGTGGTTAATAAATGGCAGCAACAATGTTGTTGCTACAATGTCACAGCTCTCTGTTGCAGCATCATCAGGATTCTCTTCGACGATAACTGCCTCTTCAGCGACCCTTCCATTCAACCAACAGAACCATTTCGCCAGCAACCTGCGTCTTGCTGCATCCACCACATCTTCCCCCAACCCCTCTCTTTACTCTTACAAGAGATAATTAATGTTAAAACCTTGAGTGCGTTGTCCGTTGTGCTAAAAATTAAGCAGAGGAAGAAAACTGAATCAACTGGAGTCTTTAGGGTGGATATTGTTTTGATTTTGTAATATAACATGCAACATAGATTGCTTACAATCTGTTCATCTGCCCAAAAAAAAAAAAAAA


gi|52525455|gb|CV272480.1|CV272480 WS0157.B21_M11 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA clone WS0157_M11 3', mRNA 

TGAATCTTGATGATGCTCCAC
 |||||.|||||||||| ||
TCTTAGGACTACTACGACGTT

EST sequence (targeted fragment marked with yellow):
AAGCGAAGGCTGAGGGCACTGCTGCTGCACATATGGGTTTAGAGACGCTTCATGGTCTACCAATAGCATCGAGGAACCTTCCGACNATGGTCTGGCATGTTCCCTGGTTTAGCATCAAGCTATGAGGAAAGGACTCCGGAGAAGAGGTTTGAAGCAGTTTCTCCACCGAGATTCTCAAGCTGGCCATGGCAGATAAACGGCAGCAACAATGTTGCTGCTACAATGCCACAGCTCTGTGTTGCAGCATCATCAGGATTCTCTTCTTCGACCAAAACTGTTCCTTCAGCTACTCTTCCATTCAACCAACAGAACCATTTCTCCAACAACAACCCGCAACTTGCTGCCTTCACCACATCTGCCACCAACCCCTCGTTTTACTACTCTTATACGAGCTAATTAACGTCAACACCTTGAGTGCATTTGCCATTGGGCTAAATTAAGCGAGCAAGAAAACTGAATCAATGGAGTCTGGAGTTGATACTATTTTGATTTGTAATATAACATGAAGCATAGATATGCTAACAATCTGTTCAGCTGCATCAAGAGAAATCGTTGACGATTCCGAATCCTCGTCATTTTTCAATGAAGTGGTCGCTCTCGGACTCGAATTTACACCAAAAAAAAAAAAAAAAAA