| mature miRNA: AAGGGTTTGGAGGAACTC species: Populus x canadensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|56832893|gb|CX185469.1|CX185469 G11_45-55_13.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x ca AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCTTCCTAGGTATTAGTTCATCCCGTCTACTAAATAATACCATTGGCTTTCTCACTTCAGCCGAAACCACCATCGACAACTTTTGCTAGTTTTTGGTTTCCTCCAAACCTTTGGGCCTCTACTCTCTATATAAGCAAAACCCAGGCTTGGTCGCACCATCAAACAAAATCCTATATTACATCTTATCTTTCTCAACTAAAAATTGTCCTTTTTTGTTGTTGTTCTAGTGCAAAGAAAGGGTAAAGAAAGATGATTTCAGCAAGATCGTTCCATCAGAATGCCAAGAACCAAGTCAAGTCAATCTCTCAGGCCAAGAAGCTGTCTTCTCCAACTTCTAGTACTGTGGTTTCAAGTAAAGTAAAAGAAAATCAGAAAGCAACGCAAGCAGAGGAGTCCCTGAGGAGAGTCATGTACTTGAGTTGCTGGGGTCCTTACTAGTTATTTGATAAACTACTAGCTAGCAGAGGAACTATATATGGTCATGGAATGGTGACAGCAAAGAGGCAATCAAAGAGTTTCGAAGGCAAGGTCGACTGCTTATCAACAATCAGATTCTGCTCTAGCAATTGTTTTTAAATGGAATATTGTAGTTTAATGAATTGCTAGATGAAGGGAGAAAATTTTCTTAATTTCTGCATGTTGATGTAAATTGTACTTTTTTTGCTGAATTTTG | |||||||||
gi|56824892|gb|CX177468.1|CX177468 C04_45-107_06.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x c AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): GGCACGAGGGTGCTAGTTTTTGGTTTCCTCCAAACCTTTGGGCCTCTATTCTCTATATAAGCAAAACCTAGGCTTGGTCGCACCATCAAACAAAATCCTATATTACATCTTATCTTTCTCAACTAAAAATTGTCCTTTTTTGTTGTTGTTCTAGTGCAAAGAAAGGGTAAAGAAAGATGATTTCAGCAAGATCGTTCCATCAGAATGCCAAGAACCAAGTCAAGTCAATCTCTCAGGCCAAGAAGCTGTCTTCTCCAACTTCTAGTACTGTGGTTTCAAGTAAAGTAAAAGAAAATCAGAAAGCAACGCAAGCAGAGGAGTCCCTGAGGAGAGTCATGTACTTGAGTTGCTGGGGTCCTTACTAGTTAATTGATAAACTACTAGCTAGCAGAGGAACTATGGTCATGGAATGGTGACAGCAAAGAGGCAATCAAAGAGTTTCGAAGGCAAGATCGACTGCTTATCAACAATCAGATTCTGCTCTAGCAATTGTTTTTAAATGGAATATTGTAGTTTAATGAATTGCTAGATGATGGGAGAAAATTTTCTTAATTTCTGCATGTTGATGTAAATTGTACTTTTTTTGCTGAATTTTGTGCATAATCAACTTGTAATGTAAGAGCCTTACTATGATCAA | |||||||||
gi|56833804|gb|CX186380.1|CX186380 E12_45-122_10.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x c AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): AGTGGATCCAAAGAATTCGGCACGAGGAAATAATACCATTGGCTTTCTCACTTCAGCCGAAACCACTGTCGACAACTTGTGCTAGTTTTTGGTTTCCTCCAAACCTTTGGGCCTCTATTCTCTATATAAGCAAAACCTAGGCTTGGTCGCACCATCAAACAAAATCCTATATTACATCTTATCTTTCTCAACTAAAAATTGTCCTTTTTTGTTGTTGTTCTAGTGCAAAGAAAGGGTAAAGAAAGATGATTTCAGCAAGATCGTTCCATCAGAATGCCAAGAACCAAGTCAAGTCAATCTCTCAGGCCAAGAAGCTGTCTTCTCCAACTTCTAGTACTGTGGTTTCAAGTAAAGTAAAAGAAAATCAGAAAGCAACGCAAGCAGAGGAGTCCCTGAGGAGAGTCATGTACTTGAGTTGCTGGGGTCCTTACTAGTTAATTGATAAACTACTAGCTAGCGGAGGAACTATGGTCATGGAATGGTGACAGCAAAGAGGCAATCAAAGAGTTTCGAAGGCAAGATCGACTGCTTATCAACAATCAGATTCTGCTCTAGCAATTGTTTTTAAATGGAATATTGTAGTTTAATGAATTGCTAGATGATGGGAGAAAATTTTCTTAATTTCTGCATGTTGATGTAAATTGTACTTTTTTTGCTGAATTACTATGATCAATGTAATATTATA | |||||||||
gi|56832947|gb|CX185523.1|CX185523 H02_45-116_16.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x c AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): GGCACGAGGGAGATTCAGCGACGCCACAGTAACCCCAGAACCCTCTATATAAAAAGCAGACTACCATTTTCCACCTACCCAGATCCAGCAACAACCTGGAAATGGCTTTCAACTCAGTACTTCGCAGAGCCTCCAAATCCTTCTTGCCTCTCGCTGTCCGCTCTGTTGGATCTCCCAGAACCTTCCCCAGAGCTATCCCCTCCGTTATCTCCGTTGAAAACCGCACCACTCTACGAAACTTCCTTCCATTTTCACACTTCTCAACAGAGGTCGCCGCACAGAAGCCAACCGCCGATGACAATCTGATTCGAGTCCTTGAAACTGAGATCGATTGCACCGAGCAACCCCAAGATGGAGAGAATATCCCAAATGAATTTCCTTTCAAACTCGGAGATAATCCTGGAGGGAGGACCATTTCGCTAAATAGAAAGCTCCAAGATGAAACTACCAAAATGGAAGCTGACATGCCTAATGTTTCAATTAATGTTGATGATGCCAATGGCAATGTGAGTACTACCAAGGGAAGTGGTCAGTATATGGAGTCTGGTATCACTGCTTTCCGCGATGAGATCAGAATTGATAGCTTGTCAATTAAAAACGTTATTCCTGTTTGTTTCTATCTATTTGTGGGGGGGTATATGAAGGAACGAAAGAGTGGATTGAGG | |||||||||
gi|56831831|gb|CX184407.1|CX184407 D10_45-114_08.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x c AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): GGCACGAGGCGACAACTTTTGCTAGTTTTTGGTTTCCTCCAAACCTTTGGGCCTCTACTCTCTATATAAGCAAAACCCAGGCTTGGTCGCACCATCAAACAAAATCCTATATTACATCTTATCTTTCTCAACTAAAAATTGTCCTTTTTTGTTGTTGTTCTAGTGCAAAGAAAGGGTAAAGAAAGATGATTTCAGCAAGATCGTTCCATCAGAATGCCAAGAACCAAGTCAAGTCAATCTCTCAGGCCAAGAAGCTGTCTTCTCCAACTTCTAGTACTGTGGTTTCAAGTAAAGTAAAAGAAAATCAGAAAGCAACGCAAGCAGAGGAGTCCCTGAGGAGAGTCATGTACTTGAGTTGCTGGGGTCCTTACTAGTTATTTGATAAACTACTAGCTAGCAGAGGAACTATATATGGTCATGGAATGGTGACAGCAAAGAGGCAATCAAAGAGTTTCGAAGGCAAGGTCGACTGCTTATCAACAATCAGATTCTGCTCTAGCAATTGTTTTTAAATGGAATATTGTAGTTTAATGAATTGCTAGATGAAGGGAGAAAATTTTCTTAATTTCTGCATGTTGATGTAAATTGTACTTTTTTTGCTGAATTTTGTACATAATCAACCTGTAATGTAAGAGCCTTACTATGATCGAAGTAATATTATAGGGTGCAAGTATAAAAAAAAAAAAAAAAAAAACTCG | |||||||||
gi|56834004|gb|CX186580.1|CX186580 F08_45-102_12.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x c AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCACGAGGCCCGTCTACTAAATAATACCATTGGCTTTCTCACTTCAGCCGAAACCACCGTCGACAACTTGTGCTAGTTTTTGGTTTCCTCCAAACCTTTGGGCCTCTATTCTCTATATAAGCAAAACCTAGGCTTGGTCGCACCATCAAACAAAATCCTATATTACATCTTATCTTTCTCAACTAAAAATTGTCCTTTTTTGTTGTTGTTCTAGTGCAAAGAAAGGGTAAAGAAAGATGATTTCAGCAAGATCGTTCCATCAGAATGCCAAGAACCAAGTCAAGTCAATCTCTCAGGCCAAGAAGCTGTCTTCTCCAACTTCTAGTACTGTGGTTTCAAGTAAAGTAAAAGAAAATCAGAAAGCAACGCAAGCAGAGGAGTCCCTGAGGAGAGTCATGTACTTGAGTTGCTGGGGTCCTTACTAGTTAATTGATAAACTACTAGCTAGCAGAGGAACTATGGTCATGGAATGGTGACAGCAAAGAGGCAATCAAAGAGTTTCGAAGGCAAGATCGACTGCTTATCAACAATCAGATTCTGCTCTAGCAATTGTTTTTAAATGGAATATTGTAGTTTAATGAATTGCTAGATGAT | |||||||||
gi|56834411|gb|CX186987.1|CX186987 D11_45-28_07.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x ca AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): GGCACGAGGCACCCAGCTCTCTTGCAACCTGAAACAGAAACCATTTAGTCGGGAACCAAAATCGAGGCTATGGCATCGCTAGCAACCTTTGCTGCAGTGCAACCAGCCACCATCAAAGGCCTTGGTGGTAGCTCCCTCAGTGGAACCAAGCTCCATGTTAAACCATCTCGCCAGGGCTTCAGACCCAAAAGCTTGAGGAGTGGTGCTGTGGTGGCAAAGTATGGTGACAAGAGTGTCTACTTTGATTTGGAGGATTTGGGCAACACTACTGGGCAATGGGACTTGTATGGATCTGATGCACCTTCACCATACAACCCTCTCCAGAGCAAATTCTTTGAGACATTTGCAGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGATATTGGGAGGCGGCTCCACCCTCGCTTATTTTAGTGCTACAGCTTCTGGTGACATCCTACCAATCAAGAAGGGTCCACAACTTCCACCGAAGCTTGGGCCTCGTGGCAAACTCTAAATTAGTTTAGCATCCTGATCTGTCATCCCTTTGTCTGTATGTTTTCATGCTTTCTTTTGACTTTAAAGGTTGGCGAGTTTGTCTAAATCCTACTTAAGATCCTGGGTTATTAATGCATACATATTTGATTCCTCTGTCAAAAAAAAAAAAAAAAAAACT | |||||||||
gi|56829047|gb|CX181623.1|CX181623 E05_45-12_09.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x ca AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): ATTCGGCACGAGGCCTCGTGCCGAATTCGGCACCAGGGCAGCGAAAATGGTGAAGTTCTTGAAGACAAACAAGGCCGTCATAATCCTGCAAGGAAAATATGCAGGTCGCAAAGGAGTGATCGTCAGGTCCTTTGACGATGGTACACGTGATCGCCCGTACGGCCACTGTTTGGTTGCAGGGATTAAGAAGTACCCAAGCAAGGTTATCAAGAAGGACTCAGCCAAAAAGACTGCCAAGAAATCCCGGGTCAAGTGCTTCATCAAGCTAGTGAACTACCAGCACCTGATGCCCACACGTTACACGCTGGATGTGGACTTGAAAGATGTTGTGACCGCTGATTGTTTGTCAACCAAGGATAAGAAGATTACTGCTTGCAAGGAGACAAAGGCTAAGTTCGAGGAGCGGTTTAAGACAGGCAAGAACAGGTGGTTTTTTACAAAGCTGAGGTTTTGATTTAAAAATGGTCTGTCAGTTGTTGAGCTTTTCCAAGCCTTTATTATTATGATGGATTTTAGCAGTTTTGTTGATTTTGGATCTCTTTGGGTTTTGTTATAAGCAAACTCATTGCCTGGTTTATTGTCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|56827715|gb|CX180291.1|CX180291 H07_45-86_15.ab1 leaf inoculated with Marssonia pathogen of Populus euramericana Populus x ca AAGGGTTTGGAGGAACTC EST sequence (targeted fragment marked with yellow): AGAATTCGGCACGAGCCTCCCTCTGAGTGTTGACAAGCCAAGACCAAGCTTCTACTATTTCCTCCGAGTCCCCAGAACCTCTGCCTTAAACTCTCTCTGTGATGGCGGCTCCATTCTCTTCACCAACAACGCCACCGACACTGAGGTCCATCTTTCAACCCAACCCAAACCCACCCAAAGCCCTCCTCTCCCTCACAGGTTCATTTCATAGAGGGCCCCACCGCGCCAAGGTTGGTTACAACAGTATTGGTGCTGCTAGCGTGTCTTTGTGGAGCTCTTCTGCTAACTACTCCAGTCTCCGTAACAGCTCCTCCAAACTCTCCGGCAAGCCCGTTGCTGTAAAGCGGTTGCTGCAAAACAGAAGAGGAGTGGTGAGGAATGCTACTATTGAAGAAATCGAAGCGGAGAAATCTTTGATTGAGGATGATGCTAAAGGAAGGATGGAAAAAACTATTGACACTATGAGAACCAATTTTAATTCTG | |||||||||