| mature miRNA: CTTTGTATTCTTCCACAGCTT species: Prunus persica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|209173953|gb|FC863927.1|FC863927 PPN079G03-T7 PPN Prunus persica cDNA clone PPN079G03, mRNA sequence CTTTGTATTCTTCCACAGCTT EST sequence (targeted fragment marked with yellow): GGTCTATTTTTCTTCTCATGTTATCATGGTCCTTGGAGAAAGCACGCGAATCTCCCTCTCCACAACATGAGAAGAAATCACCTCTTGAGCCTCTGAACGAAAGTAAATCAATTGCTTCTGTGCATCAATCCCAATTTCAGTACAGCTGCCGGAGTAGGTTTTTTGAGTTCAGGTTTGGCCAGAAGGTGCTGGCAATGGCTACAGCGACATATCCACCACCACCACCATATTATAAGCTCTACAAAGATTACTTGCAAGATCCCAAATCAGCTCCGGAGCCGCCCCCTCCGATTGAAGGGACATACATTTGCTATGGCGGCAATTACACTACTGATGACATTCTTCCGAGCTTGGAAGATCAGGGAGTGCGTCAACTGTATCCAAAAGGCCCAAACATTGATTATAAGAAGGAACTGAGGTCACTTAACAGAGAATTACAGCTGCACATTTTGGAGCTGGCTGATATTCTTGTAGAGAGACCATCACAGTACGCGAGGAGAGTGGAAGATATATCTCTTATCTTCAAGAACTTGCATCATCTTCTCAACTCATTGCGTCCCCATCAAGCTAGGGCAACGCTAATTCACATTCTAGAACTTCAGATACAACGTCGTCAACAAGCTGTGGAGGATATAAAGAGGAGGAGAGAAGAGCACAGAGACTTCTCAAGGAGTCTATTGGACATT | |||||||||
gi|115595245|gb|AM289334.1|AM289334 AM289334 Prunus persica fruit skin mature fruit Prunus persica cDNA clone Skin91C08, mRNA se CTTTGTATTCTTCCACAGCTT EST sequence (targeted fragment marked with yellow): GACGATCATCTCAGAGTTGTCCCTCGTGCCGAATTCGGCACGAGGCTGAGGCAGAAAACAAAGGCTGAGCTTTTGAACCAGCTCAAGGATCTCAAGGCAGAGCTTGCCCTTCTTCGCGTGGCCAAGGTCACTGGTGGAGCACCCAATAAGCTCTCCAAGATCAAGGTTGTGAGGCTATCGATCGCCCAAGTGTTGACTGTGATATCACAGAAGCAAAAGTCTGCCCTGAGAGAAGTGTACAAGAACAAGAAGTTCTTGCCTCTTGATCTGCGTCCCAAGAAGACCAGAGCTATCCGCCGAAGGCTCACCAAGCACCAGGCATCTTTGAAGACCGAGAGGGAGAAGAAGAAGGAAATGTATTATCCCTTGAGGAAGTATGCCATTAAGGCATAGAGTGTTGGATCAATTACGTTAGATCATCTTGGTACCTTGCTGTAATAGAATCCTTTTGTTCACAAGTTTTGGATTTACTTTTGATTAAGAAATTAGACCTGAGATTTTGATGTTTAATTTTTCTTGTCTGGGTTTTGGGGAGGCATGTCTTGCCCAAATCAACTTAATTTTCTTCGGGTGCAATGATAGTTAAGATTCTGTTCATGTTTGATAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|89494116|gb|DY649910.1|DY649910 PU4_plate37_J14 PU4 Prunus persica cDNA similar to similar to AC016661_7 (AC016661) putative CTTTGTATTCTTCCACAGCTT EST sequence (targeted fragment marked with yellow): CGTGAAGCTAAGAGAGAGCCGCCGTTGCAGAACTCACAGAACACAGCAATGGCGAGAATCAAGGTACACGAGCTGAGGCAGAAAACAAAGGCTGAGCTTTTGAACCAGCTCAAGGATCTCAAGGCAGAGCTTGCCCTTCTTCGCGTGGCCAAGGTCACTGGTGGAGCACCCAATAAGCTCTCCAAGATCAAGGTTGTGAGGCTATCGATCGCCCAAGTGTTGACTGTGATATCACAGAAGCAAAAGTCTGCCCTGAGAGAAGTGTACAAGAACAAGAAGTTCTTGCCTCTTGATCTGCGTCCCAAGAAGACCAGAGCTATCCGCCGAAGGCTCACCAAGCACCAGGCATCTTTGAAGACCGAGAGGGAGAAGAAGAAGGAAATGTATTATCCCTTGAGGAAGTATGCCATTAAGGCATAGAGTGTTGGATCAATTACGTTAGATCATCTTGGTACCTTGCTGTAATAGAATCCTTTTGTTCACAAGTTTTGGAT | |||||||||
gi|209175022|gb|FC865524.1|FC865524 PPN005F11-T7 PPN Prunus persica cDNA clone PPN005F11, mRNA sequence CTTTGTATTCTTCCACAGCTT EST sequence (targeted fragment marked with yellow): GGCTGGATGGGAAGCTGCCATGAATCCCCGATTCTCCAATTACACTGTTAGCCAGTTTATGCACCTTCTGGGAGTTAAACCAACACCCCGAAAGGATTTGCAGAGTTTTCCTATTTTAACTCATCCAAAATCTTTGAAGTTGCCAGCTAATTTTGATGCAAGAACAGCTTGGCCTCAGTGCAACACAATTGGAAGAATTCTAGATCAGGGTCACTGTGGCTCTTGTTGGGCTTTTGCTGCTGTTGAAGCACTATCAGACCGTTTTTGCATCCATTTTGGCATGAACATATCACTTTCTGTTAATGATCTCTTAGCGTGTTGTGGTTTCATGTGTGGAGATGGTTGTGATGGGGGGTATCCAATTTATGCTTGGCGATACTTTGTCCACCACGGTGTTGTCACTGAAGAGTGTGACCCATACTTCGATCCAACTGGCTGTTCACACCCTGGGTGTGAGCCCGCATATCCTACTCCAAAGTGTGTTAAAAAGTGTACAGATAAAAACCAGCTATGGAAGAATTCAAAGCGTTATAGTATCAATGCATATAGAATCAATTCTGATTCCCACAGTATCATGGCAGAGGTTTATAGTAATGGACCAGTTGAGGTCGCCTTCACTGTTTACGAGGATTTTGCACACTATAAATCAGGAGTTTACAGACATATTAAGGTGATGTATTGGGAGGTCATGCTGTTAAGCTAATTGG | |||||||||
gi|89490931|gb|DY646725.1|DY646725 PU3_plate27_I16 PU3 Prunus persica cDNA similar to expressed mRNA inferred from Prunus persic CTTTGTATTCTTCCACAGCTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTGAAAGCATCAACAAATATTAAATATTAGGAAGAAAAAAAAAAGGAATATATTCACCAACAAAATAATACGGTTCTTCAATTCAATTCTAAGACAATATTTATCTTCCTACCGATGAAGACCGATGAAGACAAGAAACAATTTGCGGAAGAGTACAAAGAAAATCTGGAAGCTAATATTACAC | |||||||||
gi|115594340|gb|AM288812.1|AM288812 AM288812 Prunus persica fruit skin mature fruit Prunus persica cDNA clone Skin85D11, mRNA se CTTTGTATTCTTCCACAGCTT EST sequence (targeted fragment marked with yellow): GAGTTGTCCCTCGTGCCGATTTCGGCACGAGGCTGAGGCAGAAAACAAAGGCTGAGCTTTTGAACCAGCTCAAGGATCTCAAGGCAGAGCTTGCCCTTCTTCGCGTGGCCAAGGTCACTGGTGGAGCACCCAATAAGCTCTCCAAGATCAAGGTTGTGAGGCTATCGATCGCCCAAGTGTTGACTGTGATATCACAGAAGCAAAAGTCTGCCCTGAGAGAAGTGTACAAGAACAAGAAGTTCTTGCCTCTTGATCTGCGTCCCAAGAAGACCAGAGCTATCCGCCGAAGGCTCACCAAGCACCAGGCATCTTTGAAGACCGAGAGGGAGAAGAAGAAGGAAATGTATTATCCCTTGAGGAAGTATGCCATTAAGGCATAGAGTGTTGGATCAATTACGTTAGATCATCTTGGTACCTTGCTGTAATAGAATCCTTTTGTTCACAAGTTTTGGATTTACTTTTGATTAAGAAATTAGACCTGAGATTTTGATGTTTAATTTTTCTTGTCTGGGTTTTGGGGAGGCATGTCTTGCCCAAATCAACTTAATTTTCTTCGGGTGCAATGATAGTTAAGATTCTGTTCATGTTTGATAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|89486622|gb|DY642416.1|DY642416 PU3_plate22_E01 PU3 Prunus persica cDNA similar to weakly similar to 60S ribosomal protein L3 CTTTGTATTCTTCCACAGCTT EST sequence (targeted fragment marked with yellow): CAGCAATGGCGAGAATCAAGGTACACGAGCTGAGGCAGAAAACAAAGGCTGAGCTTTTGAACCAGCTCAAGGATCTCAAGGCAGAGCTTGCCCTTCTTCGCGTGGCCAAGGTCACTGGTGGAGCACCCAATAAGCTCTCCAAGATCAAGGTTGTGAGGCTATCGATCGCCCAAGTGTTGACTGTGATATCACAGAAGCAAAAGTCTGCCCTGAGAGAAGTGTACAAGAACAAGAAGTTCTTGCCTCTTGATCTGCGTCCCAAGAAGACCAGAGCTATCCGCCGAAGGCTCACCAAGCACCAGGCATCTTTGAAGACCGAGAGGGAGAAGAAGAAGGAAATGTATTATCCCTTGAGGAAGTATGCCATTAAGGCATAGAGTGTTGGATCAATTACGTTAGATCATCTTGGTACCTTGCTGTAATAGAATCCTTTTGTTCACAAGTTTTGGATTTACTTTTGATTAAGAAATTAGACCTGAGATTTTGATGTTTAATTTTTCTTGTCTGGGTTTTGGGGAGGCATGTCTTGCCCAAATCAACTTAATTTTCTTCGGGTGCAATGATAGTTAAGATTCTGTTCATGTTT | |||||||||