| mature miRNA: GCAGTGACGTTGGTGAAGGTG species: Prunus persica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|59931329|gb|AJ873298.1|AJ873298 AJ873298 Prunus persica fruit mesocarp plus epidermis 30 days after bloom Prunus persica cDNA GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): GGATCCCCCGGGGCTGCAGGTTTTTTTTTTTTTTCAGATGTCTTCATAGAAAATTTAGAAATCCATAAAAGTTATAAACAACTAGTAAAACAGTAGGAGTTTCATAGTCTCCACAGAGAATGATAGAAGTTAAGCAGATGCAGTAGCAGTAGCTGTAGCAGCGGTGGCAGAGGCAGAGGTGGCGGAGGCAGCGGCGGCAGCGGCGACATGCTTGGCAACTTTGATCTGTAACTCGTCTTTCTTGGCACCCACAACCTTGTCCACTATCTTGCCTTCCTTGAGGAAGAGGAAGGTAGGCATTGGCTCCACAGCCCACTCCTCGGAAACAGTCCTCAGTTCATCCACGTTCACCTTTAGGAACGTCACTTCTGGGGTCTTCTTAGGCAACTCCGGCCAGATTGGGGCGATCAACCGGCGCGGTCCACACCACGAAGCCGTGAAATCCACCACCAACAGTTTCTTGTTCT | |||||||||
gi|22487335|gb|BU047258.1|BU047258 PP_LEa0029F08f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0029F08f, mRNA GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): AAAATAAATAATCTCAAAAATATGTGTCTCATATTCAGTAATTACACATATATCAAACGCTAAACATTAATTAATCAATCTGACAAACAAACATATACATTGCATCACCCAAACGTGCTGCTCAATCCATCTGCGCATAGCACCGAGTTAGGTGGTTTTGGTTTATTGCAGCCACCGCGACAAGATCAAAGGAGCACGCTGTGGTGATTCATTGCTAAATGCTTTTAACTTCTGTTGTTGCATTTCTCCATGGCCCTAGGTGCCAGCCCAACAACCTCTTTGCCCTTCATTATGCGCAATCTCTTGCATGATTCAACAAACATGTCCCATGGGACATCGACAACCAGCATCCAATCACCATCCTTGTCTTAATATGTCGGGATGTAATCAGAACCCTTGAGCACATCCATCAGCTTGCTTTCATTCATGAAATCCTTCATTCCTTGGGATCCACAGTTTCCGATGGCAAAGGAGCTGAACATTTTGGCTATGGCATCAGAGAGCTCACGGTAACTCTTGTACATCTTCAAGTCCACTCTGCGAAGGTATGGTGCACCATCCATGCTCACCTTCACCAACATCACTGCATTGC | |||||||||
gi|209179867|gb|FC866673.1|FC866673 PPN062H06-T7 PPN Prunus persica cDNA clone PPN062H06, mRNA sequence GCAGTGACGTTGGTGA-AGGTG EST sequence (targeted fragment marked with yellow): GACCTCTGGAAAGTGAGAACTCGCCGTTCAGCTCTGCAATTCATTCCTTCGAACACAGAGAGATGGGAAGAGCCGAGAGAGAGCAATTGAATCGAACTCTGAATCAGCACCTGAACACCATCCACGAGACCTTTCAGTTGTTAGATCAAACTCCACCTTCTACACTTGAGAAGGTGAGCTGGGAGAAGGTCATGCAGATGGGTGACCAAGTCACCAAACAAGCTACCATTGCTGGAATGCTTTGGAACGGAGAAACACCAGAAGTTAGAGCCCTTGAAGAAAACATGGCTTCATACTTCAATATTCTACAAGGTTTTCTTCTGCTTTCTCATGGGGGTATAGTGGGTGCAGGGCCTACCCTGTCTTCTTGTGTCCATGCATCTGTAAAGCAAGTTGTTGACTCCAGTTTTAAGTTGTTGAAGGAATCTGTCTCGTTGTATGGTGCACGGAATAAAGATGGGAAATTCTCAATGCCACAGTTGGCTGGTGCAGTATGGGAAGCGTGTTCTGCTCTAAAAAAGACACCTGCCACCAATGTCACTGCAATTGGGCGAGCAATGACACAGGTTGCAGTTTCCATGAAAGATGTTCTTCGTGAGATGAAGGAGCTTAAACCAGGTTCCTCTGACCTGACTGATGAAGCCTCTAATGAGTCTTCTATTGAAGCAGAGATTGAACCCAGGAT | |||||||||
gi|84630473|gb|DW344083.1|DW344083 PP_LEc0017P18f Peach shoot Prunus persica cDNA clone PP_LEc0017P18f, mRNA sequence GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): GTTATTTTGTCTATAAACTAGTGCTCTGTGGAGCTGTGCTGCATGAAACATGTACAACGAACGAACAACTAATCAACCACTGACATATGTTATAGTGTGTGGAAGCAAGGACACATCAACTTCAATGACACCAATAATTCTCGTGTGCGGACGTACTTTATGAAAAGACTATACGAGTGATTATAATTGATAATCAAATTAAGGCTAATCTTGCTGTGGTTACTCTTTTTGTGTTTTATCCATTTATCATCAATATTTTTTTTGATGGAGTAGAAGAACTTCAATTAGAAACCGAGGTGCTCTTAGAGTGGCATCGTTAAAACTTTGCCTTTCTTACGAGAAAGAAAAAGAGTACCACACAACTCAACCAACTAATAATACTCTACTCGTTTTTCCTATACGTTATTTTGGTGGCCTTTAGTTTGATCGTTTATCATCAATTCAATCAGACGACCCACCTAATGGGGCTTGGGTTAAAATAATTAACACAAATAGAAACTGGCAATTGATTTTGCCTGATGGAAAACCAGGGACCAATGAAACTACATGCCTGAACCCCCACCTCCTGGCAGGGCCAAAATACATACTCCAAGGGGGGGCCCCGGGCCCCCCATTTCCCCCCTAAAAGTGACCCCCAAATACCGCCCCCTCACCGGGCCCTCCTTTTTACCAACGTCCCTGCCCTGGGAAAACCCCTGGCCCTCCCCCCACCTTTAACCCCCTTGTAAACAACTCCCCCCTTTCCGCCCACCTTGGCCCAAAAAACCCAAAAAAGCCCCCCCCCCAATTCGCCCCTTTCCCAAACGGTTCCCCACACCCCTGAAATCGCCAACATCCAACCCCCCCCCCCGGTTACCCGTCCCACCTTAACCCCCTCCCCGCCGTGCGGTTGCCTACCCCCCCCAACCTTGAGCCCCCCTAAACTTTTGTCGCATCCTACCCTTAACACGCCCCCCCCCCCCCTCCCCGCTTTCATCTCCCTCCCCATTTTCC | |||||||||
gi|209174338|gb|FC861674.1|FC861674 PPN077F06-T7 PPN Prunus persica cDNA clone PPN077F06, mRNA sequence GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): GGAGTCAGGCGTTTAAGAATCGTTCAGCTGCTCAACGCTTATCTCGCCCAGAACTCCTACACGAACAAGAACGCCAAAACCAATTTAATTTAATTCAAAAAGTTTTCATCTTTTTTCTTTTCTTTCTTTTTTTGTTTGGTAAACCTATCGAAGATATCGAAATGGATCGAAAAGCTCTCGACTTCGACCTCAAGGCCTTGCTTTCCTACGCCTCCACTAACGTCACTGGCTTTCCTCCCTCTCCCTCTAATTTCACAGTCTCGAAGTTTGGGCATGGGCAATCGAACCCGACGTATAAGCTGGAGGTGAGTTCGGGGGCGTCGCTGAAACGCTACGTTTTGAGAAAGAAGCCTGCGGGGAAGTTGCTCCCGTCTGCTCATGCCGTCGAGAGAGAGTTCCAGGTTCTTCAGGCATTGGGTACTCATACACTGGTTCCGGTTCCTAAGGTGTTCTGTTTGTGTACCGACCCAAGCGTGATTGGAACACCCTTTTACATCATGGAGTTTTTGGAAGGACGCATTTTTCTCGACCCCAAGCTACCGGGTGTAACACCTGAGAAGAGGAGGGCACTTTACCAAGCAACGGCAAAAGCTTTAGCATCCCTACATTCTGCTGATGTTGATGCCATTGGTCTAGGAAAATATGGGCGCCGCGACTACTATTGTAACGGCAGGTAGAGAGGTGGGCAAAGCATATATTGCCTNCACTGGTGAGGGCAAGCCCAGAGAATCCA | |||||||||
gi|115591666|gb|AM291100.1|AM291100 AM291100 Prunus persica fruit skin mature fruit Prunus persica cDNA clone Skin77E05, mRNA se GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTAAGCATTCAATTCAGATGTCTTCATAGAAAATTTAGAAATCCATAAAAGTTATAAACAACTAGTAAAACAGTAGGAGTTTCATAGTCTCCACAGAGAATGATAGAAGTTAAGCAGATGCAGTAGCAGTAGCTGTAGCAGCGGTGGCAGAGGCAGAGGTGGCGGAGGCAGCGGCGGCAGCGGCGACATGCTTGGCAACTTTGATCTGTAACTCGTCTTTCTTGGCACCCACAACCTTGTCCACTATCTTGCCTTCCTTGAGGAAGAGGAAGGTAGGCATTGCCTCCACACCCCACTCCTCGGAAACAGTCCTCAGTTCATCCACGTCCACCTTTAGGAACGTCACTTCTGGGGTCTTCTTAGCCAACTCCGCCAAGATTGGGGCGATCAACCGGCACGGTCCACACCACGAAGCCGTGAAATCCACCACCACCAGTTTCTTGTTCTCGTTTCCCTTATGGAGCTGCTCTTCCCAGGCTTGAGTAGTGTGGCAGCCGATGACTTGATTTTCCTCCGCCATTTTCTCTTTGCTTTCTCTCTTTCTCAAAGGATTGTGATATTCTCAAGCAAGCTAGGTTATACA | |||||||||
gi|59932174|gb|AJ875689.1|AJ875689 AJ875689 Prunus persica fruit mesocarp plus epidermis 80 days after bloom Prunus persica cDNA GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTAAAGCATTCAATTCAGATGTCTTCATAGAAAATTTAGAAATCCATAAAAGTTATAAACAACTAGTAAAACAGTAGGAGTTTCATAGTCTCCACAGAGAATGATAGAAGTTAAGCAGATGCAGTAGCAGTAGCTGTAGCAGCGGTGGCAGAGGCAGAGGTGGCGGAGGCAGCGGCGGCAGCGGCGACATGCTTGGCAACTTTGATCTGTAACTCGTCTTTCTTGGCACCCACAAACTTGTCCACTATCTTGCCTTCCTTGAGGAAGAGGAAGGTAGGCATTGTCTCCACANCCCACTCCTCGGAAACAGTCCTCAGTTCATCCACGTCCACCTTTAGGAACGTCACTTCTGGGGTCTTCTTAGCCAACTCCGGCAAGATTGGGGCGATCAAACGGGACGGTCCACACCACGAAGCCGTGAAATCCAACAACAACAGTTTCTTGTTCTCGTTTCCCTTATGGAGCT | |||||||||
gi|59932822|gb|AJ876337.1|AJ876337 AJ876337 Prunus persica fruit mesocarp plus epidermis 80 days after bloom Prunus persica cDNA GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTGAGAGAGAGAGAGATTTTTCATTCATTGAGCCATATGAATCTCATTTGTGTACACAAGTAATTTACAGAGTCAATGGCTTCATGGGTGCAGAATTCAGAATCAAATTCTTTATCAAGGTACTGCAGAAGCAACTGAGCCAAGTTAACATGTATCCTTGAAGCAGTATTCTTAGTACTTATTTCAATCTGGAAAAAGTATGAACTCCTCATTCTGTCAACAATTGTACCCAATTGTTTAATAAATCTCTTAGCAAAACAGATGTTAAAATCAATCATCCACAATGCTCTGATGATTACAATCATCTACATTAGGTTGATCCGTCGACTGGCAATTGGGTGCCGTTTCTTCTAAGCAGATGTCTGAAGTGATATCAGCATCACCGCATTCAGATGCAGATCTAGCATCCATGTCCTTTTCCGGACAATCAAGTTGCACGCATTCAGCAACTTCACTGCCGTAATTTTCCATGTCATGAGTACTCCTACTTGACAATGTTAAGTCTTCTTTCTTCACAATATTGAATACAATCCCATTATGTATCCTTTCAGGCTGCAAAAGATCACCTTCAGTCACCATAATGCTTGAACCATTTACTGAAACCATACTTCCCAAATCCCTCTTATCGAAT | |||||||||
gi|89491622|gb|DY647416.1|DY647416 PU3_plate46_C14 PU3 Prunus persica cDNA similar to expressed mRNA inferred from MATE efflux p GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): CTCTCTCTCTCTCTCTCTCTCATAATTGGCAGTTACAAAAAGAGGCTACCAATTTGCTCCTTTTGAGAAACAAACATCCTCACGAAACCCATGCATTCATAAAATTAATCAACCTTATCTGAGAAAAGACAACACAAGAAGAAATTAGAAAAATCAGATTCTCATCTTTCACTTGGAATTTATATTTGAAACAAACCCACCAAGCCTGCAACCTATTTTGCTCAACTAAACAATGTCTGCAACATCAAATTTGGAAGAGGACCCAAGAGAGAGAGCCTCTCTGCCACCTTCATCCCTACCTCTCACTCAAAAATGGCCAGCCAACTTTTTCAAGGTCATGCTTTTAGAGCTGAAAATACAAAGAGGGATAGCTCTTCCTTTGGTGGCAATGAATTTGACATGGTTTGCCAAGATAGCAATCACAACAGCTTTTCTTGGCAGGCTCGGAGAGCTTCAATTGGCCGGTGGCACGCTTGGTTTCACCTTTGCTAATGTCACTGGCTTCTCTGTCTTAAATGGGCTCTGTGGTGCCATGGAACCTATATGTGGTCAAGCTTCTGG | |||||||||
gi|115595195|gb|AM290047.1|AM290047 AM290047 Prunus persica fruit skin mature fruit Prunus persica cDNA clone Skin63G08, mRNA se GCAGTGACGTTGGTGAAGGTG EST sequence (targeted fragment marked with yellow): GCATCAGAGAGCTCAGGGTAACTCTTGTACATCTTCAAGTCCACTTTGCGAAGGTAGGGTGCGCCATCCATGCTCACCTTCACCAACGTCACTGCATTGCTGCTGCCCTTGTTGTGCTCACTTTCTTTATCACTCGGGCTCTTCTGCAACGCCGTGAACATGTTCTTTCGGAACGATCGCACCGGTGGCCAGCCCACAACTTGTGCCTTGGCTGGAGGCTTTGCAGGATCAGCAGCTGGGAGATCAAGTTTGTTGTCCTTGTTGGTCTTGGACTTTTCAGTTACATCTTTCCCAGTAGTTATTGCCTGCTCCTTAGAATTAGAAAGGTTAAGCTTCAAATCCACACAGCTTGTCTCACAGCTGATCTCATCCTCACTGCTCTCAGTTTCAGAGAACCCTCTCTTCCTCATCGTCACCGCTGCCGCTTGATCTCCTTCATGGCTTCCACCATTTCCTGGTAACCCTAGCCTCAGCTCCGTCTCTTCAAACCCCATCTGAAGATAATGATCACCTTAATTACACCCTTAACTCTTGATTATTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTGATAAAAAAAAAAAAACTCACTCTCTCTTTCTATATAGCTGGTTTGGCTTAGCTTGTGGTGGTTCTAGTAGTGCAGA | |||||||||