| mature miRNA: TGTTTTTGGTTGCTGAGAAAT species: Prunus persica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|89494650|gb|DY650444.1|DY650444 PU4_plate39_A03 PU4 Prunus persica cDNA similar to expressed mRNA inferred from Contig2491 Pr TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTAGCCCCGCAACAACATTGATCATTTTCATTATCAAACATCTTATCTCCATTAAACAAGGGGAATCGAAAACAGCCCTTCTGCTATAACAGGCAAAGGGATTTGAGTGCGTCCCCCATATATACAACTTCAACAACATCATCACCAAAGTATGCAGCATATGTATATATATAGTACTATGACATCGAAAATTAAGATGGCTGTGGCTTTGAAAAAGCAGGGAGATAACTCTCAGAGAAGGCATACCAAGAATAAAATGAAATAACATTTGATAGCAACCAAAAATGAACCCAAAAAACCAAAAGGTTTCTCTCTTCTTTCCAAAAGCTCCAACTATAAGTTTCATCCACTTTGTACATCTTCAACCATAAGTCGTCTCTTCTTGCTATGTTATGAGAAATGGATCTATATCGGCTGGCATCTTTGCCTCACATTCTTTTCCTGTAGCCTTGGAGCAAGCCCATTAGCCTCAGATGTCCTCATAATTCTTAACCTCTTCACAGTACCAAGAAACATCCCCCAAGGAACATCTCCAACAAGCATCCAGTCTCCATCTTTGTCTTCATAGTGAGCACAACTCAA | |||||||||
gi|84630383|gb|DW343993.1|DW343993 PP_LEc0017I10f Peach shoot Prunus persica cDNA clone PP_LEc0017I10f, mRNA sequence TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): CCCCGGGCTGCAGGAATCTGCTTTTGACTGATAGAAAGCATCTCTCTTTTGTCCCTCCTGACCCCAAAAAAATAACAATAGAAAAAGTTGTTCTTGCCGGGAGAGTAGCGTCGGAGACATCTTTATCTGAGGAGGAGGCTTCGTCGTCCGGCTCCTCATAAATGATGTTAGGATCGGCCGGCTCATCCTCGGAATCCGCAAATAAAACAGAGACAGAACGGATTGTTTCAGTGACATATCTAATCAGACTGAATAGGATTTGAAGAGCTGTCACGATCATTCACATCAATTTCAGCAGGCAGGAAGGGCGCGGAAGCTACCGTTTCTAGAATGCAAGCAAGGTAGCTTGCTTACTCTCCTAGTAGCGTACGTTGGCGGCAAGGAAGGAGGCATTGGAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTCTAGAAGGCCGACCACTACATGGAGAGATCCATATACCAGTCATGAGCGATAGCGAAGCCTAGAAAGGCTGAAGCAGTAGCTTCCAGGACGAAGCCGAGCCGATAGTCGGGCGAAGGGAGCGAGACCAAGCCGAGCCACCGGTGGAGTGGCGGAGGAGGCCTACTATACGTATACTGGATTAGGAACCGGTGAAAAAGAAAATTTCAGTGAACTATTGAAGCTATCAGTGTGATTCATCAGACAAGTACCAGGGGCTTTCGGTAGACTTCTTTCATTTCCAAATTAGCTTGCGAAAAGCCCTAGCATTAGTATGAGTTCGTTGACCGCGTAAGGGCGATCCATCTTGATGACCATTCCTCGATAACCAAAAATAGAAATTTATCGTTCGAAGGCGGCTCCCTCCTCCCTCTTTAATTCCCCATGAACCACTGGTCCTGGACTATCATTTGTTCATTTGGGCGATCCGAACCCTTAGTAACCCCTTTATCCTTAGGGTCCCCCCGAAACCCTACCCAAAACCAACCCGAATGGCTTTTTTAGGCCCAATCCCTCCATTTTTGTGGAGGCAATTTTTATTTGTTTCTCGGGCACTGGATCTACCCCCGAAAAAATGAAACTTCTGGAACCTTCCCTTTAAACCCTCCCCGGGGGAAACAAA | |||||||||
gi|89490437|gb|DY646231.1|DY646231 PU3_plate10_M15 PU3 Prunus persica cDNA similar to expressed mRNA inferred from UMUC-like DNA TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): CGAACACTGCTCAGGAATGAATCAAAGCCAACCGATGAAAAATTATTCTGGGGAAGAATCTTGCGTTACACTTTCCATGCCTAGTTTTAATAGACAGGAGCAGAAAAGAAAAGCAGTGAAAGACAAGAGAACGTGCTCAATATTGAGATTCTTTAAGAATCAAGATCCATCTTGTGCTCCACAAAAGCTAGAACATGTTGAAAATACTGAAGATGTCAAAGCACCACCACTATCTCCTGGTATTCAGTCTAGAAGTAATAATTGTTTGGATCAAAATCGATCAGAGTTGCCAAAAGAAAGACCTCCTGAAGACGCTGGGGATTCTAATGTGTGTGGTTCATTTCAAATTGAACATAGAAGGGGAGGAGCATGGAGTTACAATATTGATGAAATTGACCCCTCAGTCATTGACGAGTTACCACCAGAAATTCAACAAGAAGTTCGTGCCTGGATCAGGCCTCACAAGCGGCATAACACGGTGAAACGGGGTTCTAGCATTGCTCATTATTTCTTACCAACCAAGAACACATAGCCAATGATAAGCTCTTGGGACTGCCTTGTGTGTATATATATATTTATTTGTATTATAGTGCAGTTGTAACTTTGTGTCAT | |||||||||
gi|84632387|gb|DW345997.1|DW345997 PP_LEc0005L01f Peach shoot Prunus persica cDNA clone PP_LEc0005L01f, mRNA sequence TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): TGGTATTCGGTGTGCTTCTAAGTGGTCCTGTATGCCTCTATGGTATCTGTGTGTGCAGTGACGGAACCATAATTTCATGTGTATGTCGGGACCTCTTAGAAATTATATAATTAAAAAATCGAAGTCACAATTCATTTCAAAGTAACCAAAAAGACCAAACCAACATACATAATGCATATATAAAGAAATCTATACAAATTTTTTCTTGTGGTAATTGACACATAAATTGAAATGCCCATTAAACTTAATAAAGAATAAATTAAATTTTCACAAATCCTAACAAACCATGGGCAAAGAAAAAAAAAAGTAGCATTTAATTTGTCGATATAATTGTAAAATAATAAACATCTATATGATAGCAACTAAACGTAAAATTACCAATATAAGAGTAACATAAAAATACCAACCCATATAGACATTGTATTGCAATTTCGATTCTATAAACCTAAAATTACCAATATAATAGCAACATAAAAATACACACTATGTTGCAGTTTCTAATATATAAGTCTTAATTATACAGATATAAGAGTAACATAAAAATACACAGTGTGTTTCAGTTTCTATTCTATAAACCTAAAAAATAATAATAGAAGAAATATTATTGACACACTACAAAACTCATTGTGTATGTACTCTTCTCTGAAAATAATGAAGCAAAGAATTTGGCTTTAAAACTCATTTGTGTATGTCTGCATCACAATCACACCTATTATTATATATTTTCCTACACTCGTGAATACCAATTTGACATTATTTGTGAATCAAAGTTGGCAGGCTCGGGTTAAATAAGAAAACTTAGAGAGGGATGTGTCATGTCATGCTCTTCTAATTTAATTTCGGAGTAATATTTCCACCATAAGACTGGCCCAACAAATTCTTTAAATTTTTTAGCCTCTTGACAAAGTGGCTTCCATGCCTGGTCATTTTCCCTATTTTCTTTTTATTTTCCTAATTCCCTTTTTTTTATTGGCCAAGAAAAATAAATGAAGGGAATTTGGAAGGGGGAAAAAATCCTGATAAATTCCCAAAAACTTTGGGGGTTATCTTTTTTTTTTTTTTTTTTTTTTATTTTTTTGAAAAAAAAA | |||||||||
gi|84632627|gb|DW346237.1|DW346237 PP_LEc0007H10f Peach shoot Prunus persica cDNA clone PP_LEc0007H10f, mRNA sequence TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): CTTGTATATTGCTAGCTTCTTCTTCTTACATTCAGATATGAGTCTCTAATTCCACTCATTTTGTTGACAACAACATTCATAGGCATTCGCTCTGCTGGGGATATTGCAGAGCATGAGAGCCCTATCTGCATCACTGAAACCAAACATTCCTCCAATCTTCTTCCTTCGACTGTGCTGCAATCCTGATATCTTGTAATTTGTCTTTCTTGTATGTCATTAACATATCTATCATCATCAGAACCCGAGTCATCTCTTTCTATGATCAATGAAGGGTCAACTATGTCCATAGCACGGTCAGGCATTGCCATGGCTGTGAATTGGTGAATGGTTAGACCATCTTTGAGTGTGTCACTGGTAGGTCTTTTTCCGGTGAACATTTCTAGCAACAGTATTCCATAGCTATAAATATCTCCGAGGATGGAAACTTTCCCTCCCATGCCATACTCTGCCATTCAATACATACATTATCATGTACAGTCAAATGAAATTTAGAGTTTAGACTTCAGATCTTATTTAGAGTTTTCTCATACTTCATTCCCAAGGAAAAAGATGCAGTTTTCATTCTTTTGATCAATATAGGCATAATTGGGCTTAGTAATCAGTTTTTAGGAATAGAAAATTTGAGAATGATAGAAATTCATACCTGGAGGAATGTAGCCTATCGAACCCTTTAGACCAGCTGACATTGTTCGACTTCCGGGGGAATTATTTGGGCTTTCCAGAGGAAGCTTGCTAAACCAAAGTCACCAACATGGGCTACCATATCTTCATCAAGAAGACATTGCTTGGTTTTAGATCACAATGAACAATGAAGGTTTCGCAACGATAGTGCAGATAATCTAATGCAGACGCAACGTCCATGGCCATATTGAGTCTTGGGAAAAGGGCAATCTGTTGCTTTGAGATTGCCATCATCTCTTGGATGCAGCCCCGGGGCTTGACCTTCATTTTTCAGGAACCAAAAACTAAACTTTTGAATCGTTACCCTGAAATCAAGGGTGGACAACCGTTATGATCTTGAAAAAATACAAAGCCTTAACTTTTTAAACTTTGCTTCATCAATGAAATCTTGGGAACCCCCTCTGGTGAAGGTTTAAACCTTAAAACAAATACCGTCCCCCCCCGGGGAAAACCCTTTTAAAAAAAAA | |||||||||
gi|89497839|gb|DY653633.1|DY653633 PU4_plate41_P03 PU4 Prunus persica cDNA similar to hypothetical Zn-finger, RING contains Inte TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): AATCAAATATGGCGCGACCTGGCTCAGACCAACGAGGCCACCGCCAATGCTCTCCGCACCAACCTAGAACAGGTCCTGGCTCATCATCAGGTCAAGGAAGAACACCAAAATGACGCCGCCGCTCTCATGGACGACGCTCAGTCGTGCTGCGGAAGCTGCGGCGGAGACGAGGGTCAAAACGACGGCGTCGTGGGTTTAGACGGGTGGCGCACGGTGAAGGGTACTACTAGTACTACTGAGGGTCACCGCGGGGAGGAAGGTGCAAGCGGGCGATGCGGGTCGAGTACAAGTAGGTGGTGCAGGAATTGCGGGAAGGAAGAGGCCTGCGTTTTGCTTTTGCCGTGTAGGCACCTTTGCTTGTGTACGGTATGCGGATCATCGCTCCACACTTGCCCCATCTGTAAATCCACCAAGAACGCTAGTGTGCATGTGAACATGGCTTAGATCAATTTTCACCAACCAAAAAAAAAAAATGATAAGAAAAACAGGAATTTT | |||||||||
gi|89485436|gb|DY641230.1|DY641230 PU3_plate15_A19 PU3 Prunus persica cDNA similar to weakly similar to auxin-responsive protein TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAGCAGGGAGATAACTCTCAAAAAAGGCATACCAAGAATAAAATGAAATAACATTTGATAGCAACCAAAAATGAACCCAAAAAACCAAAAGGTTTCTCTCTTCTTTCCAAAAGCTCCAACTATAAGTTTCATCCACTTTGTACATCTTCAACCATAAGTCGTCTCTTCTTGCTATGTTATGAAAAATGGATCTATATCGGCTGGCATCTTTGCCTCACATTCTTTTCCTGTAGCCTTGGAGCAAGCCCATTAGCCTCAGATGTCCTCATAATTCTTAACCTCTTCACAGTACCAAGAAACATCCCCCAAGGAACATCTCCAACAAGCATCCAGTCTCCATCTTTGTCTTCATAAGTGAGCACAAACTCAAATGATCCATCCAGCAACTTTGATGGTCTAGTTGCTCCTGCCATTATACCGTGCTCCTCCTGACCACCTGAACGTATTGAGTTCAGATGCATAGAGGGTCCATCGAACATATCTTCCAATGTTTGTGCTAGAGCTTCATAGCAACTCTGTGCAC | |||||||||
gi|22478584|gb|BU039830.1|BU039830 PP_LEa0004A04f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0004A04f, mRNA TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): TTTTTTAATATGTTTCACTTAGATTACAATCCTTTATTATTCCGTCAACCTAAAAACACACATAGAAACAATAAAAAAGAGGAGCCATCATCCATCAAATCACCATTTTGTCACTACTGGACTTGTCACTGTTGCAGAAAAGGAAAACACGTGTTCTGTATCAATCACGAGGACAGAATCTTTCTTTTTTCTTCTTCTTCTTCTTCTTTTCCAAGGTTTTGCAAGAGAGTTTTTATTTATATTTATTTTTCTTCTATAGACCAGGTAAATTACAAACACCTTTCCCACCAACCAAAGACAAATCACTATATAATTTTTCTTTAAGTGCTAGCTAGCTAGAAAT | |||||||||
gi|84630178|gb|DW343788.1|DW343788 PP_LEc0016K08f Peach shoot Prunus persica cDNA clone PP_LEc0016K08f, mRNA sequence TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): TCATGCATACCACATGACCACTAGTAACTAAAAATAATACAAAGTAATCTAGATATTCAAATAGCTAGCAACCTTCTTCTTGTTGTAACTTCTCACTTCTTCTCAATCTATGTGTCATTCCTCTTACACTTTAAATATTGTCTTTAATACACTAAAAATGCCTCCATATTTACCCTTATTAGATGTAATAGCCTTCTTCAATTCTTTATAACTTTCGAACTATCTAGTGGAGTTGTCTCCATTTTGTTGGATGAGGTTTCAAGTTCGACATATATTTTTGGACAATTTAATACCTAAGTCGTCGTTATGGTGGCGTAACTCTGCTGATGCATTATCCCATTGTAAAATGTACACTCTCCACTTTAATTTCTTAAGAACCAAAAATAATAATTTCCATTTTGTCGTTGAAAGAAAATATTCATGCTCTGAACATTCTTTTAAGGTGTACAGATTTTTTTGTATGTGCCCTTGACGTACTAGATTAGGTACGTAATGTATTCCAAGGCCTTACAAAAAAGTTCATAATTTTGTTAATTAGTAAATTCGCATATAATACACATACTGTATATGTATATATATATATATATGTATATATATATATATATATATATATATATATATATATATATATATATACTCTAGTTGATTGATTGGTTGACAGACCTGGATGGTTGTGGGTGAAGGAATCCCATATGCTTGGTCCTCTACCATCTTCGTTTGCAGCACCTTCTACCTGAAATGTGCATACGTATCATGTATATGTATATGTATAAGAGGATATACCGAATGAAGATGTCAGCATTCATACATGGATGTTAATTATCTGACATTGAAATTAGATTAACCCTAGTAATAACTTAATTAAAACA | |||||||||
gi|22486458|gb|BU046381.1|BU046381 PP_LEa0026A10f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0026A10f, mRNA TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): TGGGGACTCCACCGTTGCNTGGCGGCGCGCTCTAACAACTAGTGGNATCCCCCGGNGCTGCATGTATATAAAACTNTTCCCCATTTATCCTCAAATTTTCTCGGCAACCAAACACACAGCTCGAGGTTAGAAAACATCCTTACTATATTCACTTCCCTGAGGTTCCGTCTGATTGGCGAACACGATGATCAGCTTGTGATTATATCAGAACGCAATTGAGGAAATTAGGGTTAGCGACTCAATACAATGCGGTTGTTTCCTTTGAGCTCAAGCCCGACCTCAACCTCGACCTCGAGCACAGAGAAGGAGAAGACTGATCGGAAAAAAAATCGCGCCCTTTTGTACCTCAATGTCTACGATCTCACGCCTGTAAATAACTACCTTTACTGGTTTGGATTTGGGATCTTCCACTCCGGCATCGAAGTTCATGGCTTGGAGTATGGATTTGGAGCCCATGAGTATCCTAGCAGTGGGGTTTTTGAGGTGGAACCAAGAAGTTGTCCTGGCTTCATCTTCAGAAGGTCAGTCCTGTTGGGCAGCACTGATATGTCTCGCTCAGAATTGCGGTCATTTATGGAGCACCTNTCTGGAAAGTATCATGGTGATACTTATCATTTAATTGCCAAGAATTGCAACCATTTTACTGATGAGGTCTGTATGCNGCTAACTGGAAAGCCTATTCCANGATGGGGTAATC | |||||||||
gi|84627744|gb|DW341354.1|DW341354 PP_LEc0003K17f Peach shoot Prunus persica cDNA clone PP_LEc0003K17f, mRNA sequence TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): ATTCTTTTGCTAAATTTTTTCTCCTCATTAACACAACTCTTTTTTAGGAGCTTCTCCGCTAAGGATTTTAAATTAATGAGACTTTTAATTTCAGGCATCCATTAGATATGTTAGTGAATTTAATATGCATTATACAGGAAATTAAATGACTAAAATTAGAAATCTTTAACTAATTTTAACATAAAATCCTTAATAGAGCATTTTTCCTTTTTTTTAATCCAACAATTATAATTTATGAGATAAAAATTTTATAAATTTTTTATGATGAACTAAAGACGGAATGTCACTATATACTGAATGATTATTAACAAGAATGACACGCGTACTCTTAATTTTTCTTTGCGTTAATGAAGTTGAATTTTCTAGTTAAAAAAGGATCTTGAATTGCTCATGTATTGATTGATGATTAAATAAAAACTCAGACATACTTTTAACAAAATAGAAACTAAATGCAGGCTAAGAAACAATAAGTGGTTCATGCCATTCTTTTTCTCTTTAAACAACTATGCAACTATGCCTTTCTTTCTAACAACTCCCTCATTCTTTTGCTAACCAAATACCACGTTCTCTATAAACAATGAACCAAAGTCCCATTTCTTGCCAACCAAATACATAAGCACCCACTTTCTCTATGCACAGTTATGAATAGATATAGGCTGACAAAAAGGATATTTTTTTCATGTTCATAAAACTTGCACTCAATCTTGCTAACCAAACCTCTCATACACACACGTTTTTCACTAACCAACCATTCAACTCCCTCCCCTCCCCAAATGCAAGAAGTTGCATTGAACACATGATTCTTCTTGGAAGTCACAAACACCGTTCCACTTGCTTCCACAATTTCTGGGTCGCCTTTTTCTTCTCTCTTCTCAGAATCAGAATGGCTCCTCTCAGGGCAGGCCTTAAAAAAGAACCAAATAAAAAAA | |||||||||
gi|84569342|gb|DW340961.1|DW340961 PP_LEc0002A02f Peach shoot Prunus persica cDNA clone PP_LEc0002A02f, mRNA sequence TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): TTGTCTTCTACGATATATGAGAAGAAGAGCATCCCTGCGAAACAAGAACAGAAGATTTAATTCACATCAACCAAAAACATTTATCTAATACCATAATAATTTTACATCAGAATTATTGTTTTGTCATATCCCCTCTGACAACAGTGACTGAAAAAATTGAAGCACAACATCTCTGCTTCTCATACTACAGTAAATAAGGGAAAACGATGCGGCTATCACAAAGAGTGATTGACGGTGTGCAACAATTAGGCCAAAAATACTGTAAGTTATACTTGGCCTGTTTGTTGATAGCTTACATCAAAGTTTCATAGTATTTACTATTGCAGAATAAAAGAGAGATTTGGGGAAGGGGTGATACATACAAAGGGAAAAGGGAAATAGTCTCATTAACATGAACAAAAAAAGAAAGGAATAAAGTTTATCAAAGGGGAATTGAATAATGTGGATACTGTTTTAAATCAAAATTTTATGCATAGTGGCTGTCAAGTAGCAGATGTAGTCTAGTTTATATTAAAGGGATGTTCTAAGTTGTAATGCACTGACCTGATGGATCTCCTTTCTTGCATAATTTCAAGCTGTAAGAAAATAATGAGGATTATATTAGACTTACATCAGATTGACACATCATTGAATTACAAACAAATTTTTTTTTTACCACAAGAAACTTTTTTCTTTTGTTAGGCATATAGAGCAGCAGGTTGCCCTGGCTAGAACAAGGGTCATCCCTGCGAAAATGAGCTTGATTACCACCTGGCTGGTCCAAGGGGTCTAAAGAAGCACCAACTAGCTCTTATTCTGGTGGTACTTACCTTCTCAGTGTTGGAAGAGAACCAAGTTCGAATCTCCCCTTCCC | |||||||||
gi|209179399|gb|FC867436.1|FC867436 PPN050H08-T7 PPN Prunus persica cDNA clone PPN050H08, mRNA sequence TGTTTTTGGTTGCTGAGAAAT EST sequence (targeted fragment marked with yellow): GCCGATTCAGTCTTCTTATAACTTGTACTTACAACACCTTTCTGTCTGTCTAAAAATTTAAATTTATTTATCAACAACAAAAAACAATTACAATCCCCAATTCACCAAATCAGCAAACCCTAATTTCCCATTCACAAGAAGAACACCCAATTCAATTCCGGCACTATATCCCTCTGAGTTTCCCTTTCGTACCTATATTCCCCAATAGGTAGCAGCTGAGATTGATATTGAAATTGAAACACAGACAGAGAGCATAATGGAGGGCAATCCGCACCCAGTACCTCGAACAGTGGAGGAAGTCTTCAGCGACTTCAGAGGCAGACGCGCCGGCTTGATTAAGGCCCTCACCAGTGACGTTCAGAAGTTTTATCAAGAGTGCGATCCTGAGAAGGAGAATCTGTGTCTGTATGGACTGCCAAATGAGGCATGGGAAGTTAACCTGCCTGTTGAGGAGGTGCCTCCTGAGCTTCCCGAGCCAGCATTAGGCATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGACTGGCTATCGCTGGTTGCAGTTCATAGCGATTCATGGTTGCTTGCAGTTGCATTTTACTTTGGTGCACGATTTGGGTTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAACGATCTCCCCACCATATTTGAAGTTGTGACAGGGAATGCTA | |||||||||