| mature miRNA: TTCCACAGCTTTCTTGAACTG species: Prunus persica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22486296|gb|BU046219.1|BU046219 PP_LEa0025I16f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0025I16f, mRNA TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCTTTTTGACAATTCTGCCTCATCTCAGATTAGAGCTCTGATTGGTTGAAGCTTCTAAGCATCTTATCTCTCTATGTGTGGTGTGGCTTTGGTGACTCTCTCTTTCTCTCTCTCTCTCTCCCTCTCTCTCCATTTCCTCCATAGACGATGATCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCATGAGATCGATCGATCTTTGCATGTGAGGCTGCAGTCACTCACTCACTCTCTCTCTAACTGGCTTGCGGTTCAATAAAGCTGTGGGAAGATACAGATAGGTTCAATAAAAAATCACTATCCGATCTTCAGCATCACACATATATATATTTATATCTTGGTATGAAGCCTAAACTTACAATTTACAAAGACATTTTAAATCACTCAAATTTTGTCTCACTTTGCACAATTGTCACTTGATTTGTTTCTCAGTACCCATAAAAATTCAGTCTTTCATGATTNTGAAGTAGGTGGTGGATGATGGGNTGTNTTTCNTAACCATGCCATNAATGAAAATTATCTCAACCCTAATACTTCATAAAGGGGCTTNTANAAGCTTTGCGTNTCNGATACATGGAGATCTGANTTCTCTATCTGAT | |||||||||
gi|59932164|gb|AJ875679.1|AJ875679 AJ875679 Prunus persica fruit mesocarp plus epidermis 80 days after bloom Prunus persica cDNA TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTCAACACAATGTCTCTCCTCAATTTATTTATACAGAAAGTCACACAACTAGTTCAGAGAGACATTGTCGCTTACAGACAAGCAAAAGCTGAATGAGCACTAGATAGTTTACAGGACACCATACCAAGTTCATTATTCTTGGACATATTCAATGACTACAACCACATTAAACAGGGAAAGACTAAGCAGCAGCCACAGCTTCTGCAGGCTTTGCTTCGGGCTCTGCTGGTGCTTCTGCTTCCCAATAGGCAGTCTTCTTGCCAGTTTTGGAAACGGTTTGCAGGACTGTCTCGGGTGGTAAATTGCTTTTCACCGTCACTTTCTGTGCGTCGAAATCAATGTCATATGATTCTACACCTTCAAGTTTTCCAAGAACCCTTTTCACAGCACCAACACAGCCTTGGCATGACATACCAACCTTGAGGACAGTAGTCTGAGACGCCATCTCTGGGTATATGGATTTCAGGAAAGCTGAGGAAAATTGAGAAATTTGTTGTTGTGGATGGTTCTGCAACTGAAAACGTTCAAACCAACCCAATTCCAGTTCCAGTTCCTGTTCAAGCTCAAAAACCCCATTTAAAAAGTTTCAAGCTTTCTTCAATGGTGATCATCACAGAGGAAGAGGAAGACCAACAACGACAAGAGCCGAAA | |||||||||
gi|22487503|gb|BU047426.1|BU047426 PP_LEa0029N24f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0029N24f, mRNA TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TTTTTGTTCATGTTGCCATCTCTGCTTTTTGACAATTCTGCCTCATCTCAAATGGGAGCTCTGATTGGTTGAAGCTTCTAAACATCTTATCTCTCTATGTGTGGTGTGGCTTTGGTGACTCTCTCTTTCTCTCTCTCTCTCTCCCTCTCTCTCCATTTCCTCCATAAACGATGATCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCATGAGATCGATCGATCTTTGCATGTGATGCTGCAGTCACTCACTCACTCTCTCTCTAACTGGCTTGCGGGTCAATAAAGCTGTGGGAAGATACAGATAGGCTCAATAAAAAATCACTATCCGATCTTCACCATCACACATATATATATTTATATCTTGGAATGAAGCCTAAACTTACAGTTTACACAGACATTTTAAATGACT | |||||||||
gi|22478745|gb|BU039991.1|BU039991 PP_LEa0004I11f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0004I11f, mRNA TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CCCAGGTGTCTCGCAATGTCAATATAGCCAAACTTCAAGCTGGGTATCTCTTTCCAGAGATTGCTAGAAGAAGGGCTGCACACTTGCAAAAGTACCCTGATGCACAAGTGATTAGCCTTGGGATTGGTGACACTACTGAGCCCATTCCATAAGTTATAACCTCTGCAATGGCAAAGAGATCACATGCGTTGTCTACCCTAGAGGGTTACAGTGGTTACGGAGCTGAACAAGGTGAAAAGCCACTGAGAGCTGCAATTGCTTCGACCTTTTATGACAACCTTGACATAGAGGAAGATGACATCTTTGTTTCTGATGGTGCAAAATGTGACATATCCCGCCTTCAGGTTGTTTTTGGGTCTACAGTTACAATGGCAGTTCAAGATCCATCTTATCCGGCTTATGTAGATTCAAGTGTTATTATGGGCCAAACTGGAGAGTATCAGAAAGCTGTGGAAAAGTTCTGAAATATTGAGTGCATGAAGTGTACTCCTGACAATGGATCTTTAACTGATTTATCCACTGTTTCTTGAACAGAATTTATTTTTTTCTGCTCACAAAAAACCCTACTGGTTCTTGTTGCAACTAGGGAGCCGCTGTAACAACTGGTGCCATTACGCAA | |||||||||
gi|89004806|gb|DN555727.1|DN555727 PPL-20-D11 Prunus persica L. leaf tissue, Plum Pox Virus infected Prunus persica cDNA, mRNA s TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): AGGCCTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGATTGTTTAAGAGAGGCTTGCAACTCATCAGAATCCAGTGACGCTAAGACAGATTCAAAAGGAAAACTTAATTATCATTCAAGAAGTCTAAGATAAGCATCTTGTTGTCCACTTAGTAGTTGAGACCACGAAAGGTGATTTCAAGAATGCAGAAATCAACCAAACGGCAAGCTAAAATGTTGTTCAAAAAATTCAAGAAGGAAATCTTGTCTTGCGGGCTCCTATGATAATTTGAAGGACCTATCCACCTTTCTTTCCCTGATTCTGCTCATCTTAAGGAAGCTGTGGAAGCCTCTCTATCTAATCTGGACTATGTTATGTTTAATTATGAAGAAAGATCATAAATTATAAATACTTCCTGAATTACTGTAAACCTAAGACTCTACTCCAGTAATTTCAGAAGGATACTTTCTCTATTATGTTA | |||||||||
gi|22483334|gb|BU043257.1|BU043257 PP_LEa0015H05f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0015H05f, mRNA TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TAGATTCAAGTGTTATTATGGGCCAAACTGGAGAGTATCAGAAAGCTGTGGAAAAGTTCGGAAATATTGAGTACATGAGGTGTACTCCTGAGAATGGATTTTTCCCTGATTTACGCACTGTTTCTCGAACAGATATCATATTTTTCTGCTCACCAAACAACCCTACTGGTTCTGCTGCAACGAGGGAGCAGCTGACACAACTGGTGCAGTTTGCAAAAGATAATGGGTCAATCATAGTCTATGATTCTGCATATGCCATGTATATGTCAGATGACAATCCACGCTCAATCTTTGAAATCCCTGGAGCCAAAGAGGTTGCAATTGAGACATCATCATTCAGTAAGTATGCTGGATTCACCGGAGTTCGTTTGGGGTGGACTGTTGTCCCAAAGCAGTTGCTCTTTTCAGATGGATTTCCT | |||||||||