| mature miRNA: ACATTATGGGACGGATGGAGT species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207440062|gb|FF344045.1|FF344045 BG02010A1C05.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): ACCGATTTTTTTTTTTTTTTTTTGATTGGGCACAAAATTTGACTTATGATGAAATGAAAATCAGTTGACCGTTAGTAAGACACACCCGAAGAAAAAAGAACAAAAACTAAAACAACATGAGCGCCTAGCTAAACTGGGTTAACACAGAGAAACACCAACACCGAGCTTGCTAAAAACTACTCCCTCCGTCCCTTAATGCAAGACGTTTTTTTGACACTATGGGACGGAGGGAATCTCCAACTCGCCCCCCTCAACCATGAGGAAACGAGACCCTCTGTCGATCACCTTGTGGCCATTCCCTGTCACCCTGCTCAAGTCTTCACATGGGCTGATGTCAAACTTGAGTTCAGCCTTCTCCCCTGCTTTGAGATGCTGGCTACGGAACGCAATCAGCTGCCTCGCTGGCCGGCCGTCCGTCACATTGGGCCACCGGAGGAACATCAGCACAGAGTGCTTGCCGTCCATCGGACCGTGGTTCTGCACCTCCACCACCATGGGGATCTTGCCGTCTATTGCAGGACGGGACGCGAGACACTACCAGTGGCAGCCGCCACTACGAATAAAGTTTGCAAGCAAATAATGAAGCGGGCTGGAGCAGATGGTAGACTGGCAACATGGCGTCCTGGACGTTGTCGACGGCCTCTGCCATGAACCGTCGTCTCCGACCTCACCGGTGTCANNNCCCAAGTCAACCTGATGCTTGAAATAAAGTTGCTTGCATGTCATCAAAATCCAGTTCNNNNGCTGC | |||||||||
gi|207440061|gb|FF344044.1|FF344044 BG02010A1C05.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): GCAGCTTCTGAACTGGATTTTGATGACATGCAAGCAACTTTATTTCAAGCATCAGGTTGACTTGGGGCCTGACACCGGTGAGGTCGGAGACGACGGTTCATGGCAGAGGCCGTCGACAACGTCCAGGACGCCATGTTGCCAGTCTACCATCTGCTCCAGCCCGCTTCATTATTTGCTTGCAAACTTTATTCGTAGTGGCGGCTGCCACTGGTAGTGTCTCGCGTCCCGTCCTGCAATAGACGGCAAGATCCCCATGGTGGTGGAGGTGCAGAACCACGGTCCGATGGACGGCAAGCACTCTGTGCTGATGTTCCTCCGGTGGCCCAATGTGACGGACGGCCGGCCAGCGAGGCAGCTGATTGCGTTCCGTAGCCAGCATCTCAAAGCAGGGGAGAAGGCTGAACTCAAGTTTGACATCAGCCCATGTGAAGACTTGAGCAGGGTGACAGGGAATGGCCACAAGGTGATCGACAGAGGGTCTCGTTTCCTCATGGTTGAGGGGGGCGAGTTGGAGATTCCCTCCGTCCCATAGTGTCAAAAAAACGTCTTGCATTAAGGGACGGAGGGAGTAGTTTTTAGCAAGCTCGGTGTTGGTGTTTCTCTGTGTTAACCCAGTTTAGCTAGGCGCTCATGTTGTTTTAGTTTTTGTTCTTTTTTCTTCGGGTGTGTCTTACTAACGGTCAACTGATTTTCATTTCATCATAAGTCAAATTTTGTGCCCAATCAAAAAAAAAAAAAAAAAATCGGT | |||||||||
gi|207404024|gb|FF359537.1|FF359537 BG02035B1D05.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): GCATTTTTTNNTTTTTTTTTTGCAGTTCAACCTCTGTTTATTCATCATTACCAAGTACTCCATCCGTCCCATAATGTAAGACGTTTTTTGACACTAGTACGGAGGTAGTACAATACAAACAGAATGTAAAGTACAGTATCTGAGTACCGAGTGGTCCTCTACCACACCGAGTTGACGCCACAGCTTCAGCCTTGACATGTCACACAAAACACACAAACTGTTCACGCTACAATGTCCAGCAAACAATAAAGCTCTATAACCTGACCTTACCTGACCTGACCATAATGGTAAAGTGGGGGTCACAAATCTGATTGCTTCACCGTTGGCTAACCAGGTTTTGCTCCTTGTGCCAACGGACAACAGTATCATAGGGCAAATCTCCGCCGAATATGTCTAGGGCACTCCCAACAGTGACATCGACTCGACTTTTGCCTGCTTTCTTGATCCTCTCCAGGTCGTCCATCGTTGACACACCCCCAGCGTATGTTGTCGGGATAGGTGAATGATTTCCCAGTAGTTGCACGAGTTCCTCATCAATTCCTAACCTTTTGCCCTCCACATCAACTCCATGAACCAAAAACTCATCTGCATATTCAGCAAGACGTACTAATGTTGGCCCATTCACAAAGACATCGCTGAACTTCTGCCATCTGTCAGTCACAATGGCATATCTGCCATCCTTTTTTCGACAACTAAGGTCCAAAATAAGCCTTCGTTTCCCAACAAGCTTGACAAGTTGCG | |||||||||
gi|207405138|gb|FF358225.1|FF358225 BG02032A2G04.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGATAGTTTCAGTCAGCTTTGACCAGATGCTTAGTACACTTCTGCAGTTCAACCTCTGTTTATTCATCATTACAAAGTACTCCATCCGTCCCATAACGTAAGACGTTTTTTGACACTAGTACGGAGGTAGTACAATACAAACAGAATGTAAAGTACAGTATCTGAGTACCGAGTGGTCCTCTACCACACCGAGTCGACGCCACAGCTTCAGCCTTGACATGTCACACAAGACACACAAACTGTTCACGCTACAATGTCCAGCAAACAATAAAGCTCTATAACCTGACCTTACCTGACCTGACCATAATGGTAAAGTGGGTGTCACAAATCTGATTGCTTCACCGTTGGCTAACCAGGTTTTGCTCCTTGTGCCAACGGACAACAGTATCATAGGGCAAATCTCCGCCGAATATGTCTAGGGCACTCCCAACAGTGACATCGACTCGACTTTTGCCTGCTTTCTTGATCCTCTCCAGGTCGTCCATCGTTGACACACCCCCAGCGTATGTTGTCGGGATAGGTGAATGATTTCCCAGTAGTTGCACGAGTTCCTCATCAATTCCTAACCTTTTGCCCTCCACATCAACTCCATGAACCAAAAACTCATCTGCATATTCAGCAAGACGTACTAATGTTGGCCCATTCACAAAGACATCGCTGAACTTCTGCCATCTGTCAGTCACAATGGCATATCTGCCATCCTTTTTTCGACAACTAAGGTCCAAAATAAGCCTTCGTTTCCCAACAAGCTTGACAAGTTGCGTCAGCCTTTCAATGTTCATTT | |||||||||
gi|207521167|gb|FF351174.1|FF351174 BG02017B1G01.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGCAGTTCAACCTCTGTTTATTCATCATTACAAAGTACTCCATCCGTCCCATAATGTAAGACGTTTTTTGACACTAGTACGGAGGTAGTACAATACAAACAGAATGTAAAGTACAGTATCTGAGTACCGAGTGGTCCTCTACCACACCGAGTTGACGCCACAGCTTCAGCCTTGACATGTCACACAAAACACACAAACTGTTCACGCTACAATGTCCAGCAAACAATAAAGCTCTATAACCTGACCTTACCTGACCTGACCATAATGGTAAAGTGGGGGTCACAAATCTGATTGCTTCACCGTTGGCTAACCAGGTTTTGCTCCTTGTGCCAACGGACAACAGTATCATAGGGCAAATCTCCGCCGAATATGTCTAGGGCACTCCCAACAGTGACATCGACTCGACTTTTGCCTGCTTTCTTGATCCTCTCCAGGTCGTCCATCGTTGACACACCCCCAGCGTATGTTGTCGGGATAGGTGAATGATTTCCCAGTAGTTGCACGAGTTCCTCATCAATTCCTAACCTTTTGCCCTCCACATCAACTCCATGAACCAAAAACTCATCTGCATATTCAGCAAGACGTACTAATGTTGGCCCATTCACAAAGACATCGCTGAACTTCTGCCATCTGTCAGTCACAATGGCATATCTGCCATCCTTTTTTCGACAACTAAGGTCCAAAATAAGCCTTCGTTTCCCAACAAGCTTGACAAGTTGCGTCAGCCTTTCAATGTTCATTTTGCCATCACTAAACACATAAGAAGTTACAATCACGTGACTTG | |||||||||
gi|207437402|gb|FF344654.1|FF344654 BG02005A2C07.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): GCATTTTTTCTTTTTTTTTTTAAGTGAAAGGTACTTCGCTTCTATAAATTGCTGATCCAAGTTGTTGGCACCTACTCAACATCATCTGTTTGAGCAATTTTAACACGGTCCCTCTTACCCTCTCTTTTCACACTACTTAATTAAATCAATGGCTCAGATCTTTATATACTCTTACCTCTCTTGTGCAAAGAGTAGGCAAGAGGGACCATGTTAAAAAACCTCATCTTGTTTATACTCCTTCCGTCCCAAATTACTTGTCCTAGATTTGTATAGATACGGTTGTATCTAACAATAAAATCTACTCCCTCCATCCCAAAATGTAAGACGTTTTTGTTCAAAAAACGTCTTACATTATGGACCAAAAACGTCTTACATTATGGGACGGATGGAGTAGTAATTTGGGACGGAGGTAATACATGACTTAAGAAACGATGGTCAAGTGCAGCATCCGATCACAAGTTGATCAAAAAGAGCTCAGAGCCAATTGAACTGGTAGCTCATACTGCAAACAGAAGCATCGGATCACAAATCATCAAAAAGAGCTCGAGCCAATTGAAGCAGGTAGCAGAGACTCCAAACAGAACTCAAACTTCATACTACAATTAGTTTTGGGAACTTAGAAAAAGCTTAAACCAATAGAAAAACTAGACTGAGACGAGCCACCAGCAGCATTAGCAGTCCACCGTATGTCCACTTGAAACAGATAGGGCAGCTCTCACTTCTAGTTTTAACCTT | |||||||||
gi|207454966|gb|FF357232.1|FF357232 BG02029A1F10.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): GACGAGCTCAACATGGAGGGCGCCTGCGACAGGGCCATCTTCCCGGATGAAAACATCGTCATCACAAGCTGCGACATCGGCGGCTTCTACGAGGAGGGAGGAGACCGGTGCAAGCTGGACATCGTGAGCGGGTGCATGGACCCGACCTCGCACATGTTTGACCCACTGGCCACCATCGACGACGGCTCCTGCCCGCTGGACTCTGATTCAGAAGAGTGATCACCACCAAGATGGCATGAGCCGTAGCTTCACAATATGTAGTTATAAACAAGGAGAGGAGCCACAATTGGTCGATGTGCCCTCCTCTCTCGTTTATACTTGTAAAAAGGGAATGGTTGTGATACGATTAAAGGAACAAGGATAGTACAATGCGCACTAGGTGGACACGAGGGCCTCGCTGGAAACATGGATGCATGACATGTGCTGATACTATCTCAGTAATCGTGAAAACCGAAACAAATGTAGATGAGCATACCTGTTTTGTAAGGTGCAGGCATGGCCAGGGGAGTTCATGATCTAAATACTACTCCCTCTGTCCCATAATATAAGGTGTTATTA | |||||||||
gi|207488866|gb|FF365186.1|FF365186 BG02041B1A12.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): ACCGATTTTTNNNTTTTTTTTTTACTCAAAGCTGGATGTACTATTGTCAGTATACTATATACATGTAACATGTCCCTATCGAAGGGCCTACACTAAGATCACAAAGGTGGTGAGCTCCACAGTGCAAAAAAAAAAAAAACCTACCCTTTACAACCTACTCACTCCGTCCCATGATGTAAGACGTTTTTGCAAGCTGGGACGGAGGGAGTACATGGCAAAGCTTGTGGCAAAAGTCAAGCTATATGGGTCACCTTAAGCTTGGGCTGCCCACAAGGCATAAAAGCAGTATTCTCTCTTCTCTACATCAACAAATAACGTGGCGTACCTTACTGTAAAATGTGATCTTATAGACTCTGTATTTCTCCAAGCTATGTAGATCCCAACTCCCAAGGTTATACACTAAGGATGCCCTGCAGATGTGGTTTGCGACGACGACGACATAGTTGGGTTGTCCGAGTCCGAGTTAACGCCGCTCCTCGGGCCTTCCGACTGCCTACTCGACTGCTTTTCTAAGTGTGGCTTCAACCCTGATGGCAACGTCACCGTCGGAGCGTATACTTGGTTCGCGCTTCCCGACGCAACATTGGTTGCATCTGCTGCTGCCGCGGCGGCGGCTGCAGCGGCATACTCCTGCTGGGGAACCCANNTGCAGCTGCCCACCA | |||||||||
gi|207507735|gb|FF363238.1|FF363238 BG02034A2C09.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): AAACCAATCACGAGGAATCTCAACATTCCCCTTATTATATGATTATTATAGTTTCCAATTTACTTGTCAGGTGAAATACCTGCGAAGGCTGAACAATAAAGGCGCAACACAAAATAGGAAACCATTAATGTCAAACATTTAAACCTGAGAAATCACCCACCGGCTCAGGCTAAAAATAAAATCAAATGTATATGTTGGATGTTTCATACGAACATGCGTAACAGTATGCATCACAACTCACACAGCTTTGCTTCAATGCATATCTCCATCTCAGCAATGGATACAAGATTACAACAGAAACAATGAACAAATTCAGCACAGCTTGCCTGCTTGCTCTGAGTTCAGAGCTACTCCCTCCGTCCCATAATAGTGTCAAAAAAGCTCTTATATTATGGGACGGAAGGAGTAGTTCTATTGAGCAGCCTTTTGACCCCCTTCGATTGCTCTTAGCACCTTCTGCTCTTTTGACACCTTGTTCTATGGCCTGAGCCTTTTCTTCAGCAGATCTAATATAGGTGGCCTTGGGTCCTTTCGCTTTCAGATAAGTGTATACAGGCTGCTGCAAATCGAAGTCGGTATTCTACGGTTGGACAGCTTCTAGGAGCTTCTCATAAACTTGCCGCGCAGACAAATCCTCAACAATGAGAAGCTTTGATTTATTATTCCATCCCCTTTGAAGGGTCATCTGACTCAATCTTAAGCCAAGCACCTTGCCCATAAATTCTAGCAACTCGTTGTTAGCCTCCCCCCGAGCAGCAGGGGCAGCTACTGCTAC | |||||||||
gi|207495312|gb|FF356210.1|FF356210 BG02023B2D09.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B ACATTATGGGACGGATGGAGT EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGAGCAAATCATTTTGAAGTACCTCACATTTATGGAGTCCCAAATAGACAAATACTTCATCCGTCCCATAATATAAGAGCGTTTTTGACACTACAAATGCATTAAGACTCAAATTAAACACGAACAAGAGCAGACTCCAGCCAAACTACACGAAAGCAAACGGTTCGCCACGCATGACGCATCCACCAGCCGGCTGATGGATGATCGACCAGCGCTACTCGATGCCGTAGTGCTTCTTGAGCAGGCTGATGAAGTCGTGGACCTCCTCCGGCGCCGTCAGGACCTTGGCCACGCTCTCCCTCTCCCCGCACCGCCGCGCCCACTCCGCCAGCCTCGGGCACTCTTCCTCGACGCTGAACCCGCCGTGCTTCTCGTAGCTGTAGAACCACGACGTGAGCGGTATGAGCGTGACGTCCACGAACCCGAACGCCTCACCGCCGAAGAACGCCCTGTCCCCGAGCTCGGCGTCCAGCGTCCTGAGCGTCTCCAGCATCTCGGCCCGCGCCGCCGCGCGCTCCTCCCCCTTGAGCTTCCATAGCCGCGTCCCGCAGCTGTACACCCTCTTGTCGACGTAGTCGGCCCAGAACCGCGCCTGCGCGCGCGCGTACGGGTCGGCGGGGAGGAGCTGCGGGGCCGCGCCCGGGAAGGCGTCCTCGATGTACTCGAGGATGACGAGGGACTCGCAGACGGCGCCGCCGTCGTGGAGGAGCACGGGGACCTTCTTGTGGACGGGGTTGG | |||||||||