| mature miRNA: CTCCGTTCCTAAATATAAGAC species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207381670|gb|FF365657.1|FF365657 BG02045A1D06.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): ACTTGCAAGATATGTTTTGTATATAATCNNNATCAACTACTACCTCTGTTTCTAAATATAAGACGTTTTGGCAGTTTAAATTGAACTGCCAAAACTTTTTATATTTAGGAACAGAGGGAGTACATCCTTCAAGGAACGCAGCCTGTACACATACAGCGGAAACCCATCTGGCACATAATCTATCCTCTTGATGGTGCTCATGCTGTGAATCTAAGCTCAAACCTGTGATACGTAGTCCTGTACTACTCCATCACCGTAGAAATTTCCAGATACTGCAGAATGGTAACATGGATATGATCACCCTTCTCAAGTGCAGCCGTAAAAGCTCATTATTTTAGCCATCATCACGATGCTCCCAAAGTCAGCAAACGCTCACATGGATCCAGCAGTCCTAACTGTTGTCATTCAGCTTCCGCAAAAGCGAGTGCTCCACCAGGTCCGAAATATCAAAACCCACAAAGAGAACCTTCATGTGGAAGAAACCATTTGTCCATATCGATAAGAAGGGCGTGGGTGGCGGCAGCGATGGCGACGACCTCAAGAAAGTTGTAGTATGGACGGGGAGTTGATGATGGCGTGATCTGGAT | |||||||||
gi|207406195|gb|FF352093.1|FF352093 BG02015B1E12.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): ACCGATTTTTTTTTTTTTTTTTTAAGAGCTAAAACATCTTATATTTAGGAACGGAGGGAGTATTTATCAAGCAGGAATGACTTTAATGTTCCCTACATACATACAAAGCATGTTGTAGCTATTTTTTCTTCCTGCCAAACATACGTTATAATTTGGCATTAATCTGATGCAATGCTAACTTAGCCAAGTCCTTCCGCAAGATCTTGCCCGCGGCATTTTTCGGTATGGAATCCACAAGGAAAACACGGAGTATTCGCTTATAGTGCACGACCTGTTTAGCAACAAAGTCTTTGAGCTCTGCCTCTTGCACTTTGCTTCCGGAGCGTCTTACGACAAATGCTACCGGCAACTCGCCAGCCTGATCATCTGAGTATCCAACAACTGCGGCTTCGTCGATACCTGGGTGCGTTTGAAGCAGGTCCTCCAGTTCTGCAGGAGCAACCTGGTAGCCTTTGTACTTAATTATCTCTTTCAGCCGGTCGACCACGAAGAGAAATCCATCTTTGTCGATGAGACAAACATCCCCGGTTCTCAACCACCCTTCAGAATCCAAAATCTCAGAGGTGGATTCCTTGTCACCAAGGTAACCTTCCATCACAAAAGGTCCTCGGACCCAAAGCTCGCCTGGTACACCCGGAGGCAGAGCATCCCCTGTTCCAGGATCAATAATCTTCGCCTCAGCGCCTGGCGAAAGACGCCCAACTGATCCAATTCGTCGACTTTCTTCTACTCCAACGGAACGGCAAAAACCAGCTGTGGTCTCGGTCAGTCCATATCCCTGTGAAAC | |||||||||
gi|207458450|gb|FF356576.1|FF356576 BG02024A1B02.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): TTTGGCAACACTGACAAGCCATGTACTCCCTACAAAGACTTATATTTAAGAACGGAGGGAGCAGTATATTATATCATCACGAACACCACGAGTTGATGTAGAAGACGTCCGGTCTCATGCACCCATCATGCCAGCCAGCCTGATGCATGCTGCATGTTGCACTACACGAGGGCGTAGACGCCTGCCTTCCCGATGCCGCACAGCCCGGCGTTTCCATTAGCCCCCCTGCTCATGAGGAAGAAGCCATTCTCGCCAAACGTCTGCCCCCACGAGTTCTTGACGACCCAGTACTTCTCCCCGTTCCTGACCCCATATCCCACCACGAGCACCGCGTGGTCAAGCGCGGTGCCGCATGGCCCTTTGTATATGCCGCTCTTGAAGTGCTGCAGGCTGCGGTCATGCGTGTCGATGCCGGCGACCGTCGGGCCCATCGTATAAACGGCCTCCTGCAGAAACCTCTCCCCTGACCTCAGTAGCTGCGCCCGGTAGACCAGGCCCCTGCGGGTGGCGTCCTTGTTGGTCCTGCACTGCCCCTGTTGTGCCTCATATGAGTACTCAGCCTCCTTCACGATGCCTCCCTTGCTCTTTATCCAGAGGAACGCCCTGTAGGGATTCCCACCCTTGCAGCCGCCGGGTTTTTGTGTCGAGTCACAGTCTAGTAGCTCCTGCTCGGNNAGATCCAGTAGCTCCCCGGTTTTCCTTTTCAGCTGGCTTTCAACTGCTCCCACTGCGGCGAACGCCCAACATGCGCCGCA | |||||||||
gi|207493910|gb|FF361858.1|FF361858 BG02033B2D07.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): ACACATTTTTTNNNTTTTTTTTTGGAATCCCTAGAAAGACTTATAGTATTTAGGAACGGAGGGAGTACACAGTAGTGCTGGTGCAGTATTTTTCGAGCGAGTCTTGTGTAGACAATGTCTGAGTTTTGTTGTCACGTTCCTCCGTGGATGGTTTATGTATCGCCTCCATCCATGGGAATCTTGGCAACTATTCTTCGGAGTATGACTCAGTGCTGCTGCTAAGAGCACTACTAGTATTGTGCTACAGATTCTTATAACAAAGGAAAAGCCATAATCAATCGATGCAAGCTATCCTAACAGTGTACTGGGCTAATATCATGATCGAGGTGTTCTAGGAGCTATTAGTTGGCAGTGGTCTGATCCTCCGTCTTCCTGTTGATGGTGATACCCTGATCCCTCCTCATCGGCGGCAGGCGTTCCTTCTCCTCCTCCACCTGCTCCAGCAGCACCTGCAGCTCCGCCTCCGACAGGCTCTCCAGCCGTTTCTCCATGACTTGCTTCTCGTAGTTCCTGAGCTGCGTGGCGTAGGTCATGTCCTTGTTGGCCACCCGGATCATGTAGGAGGAGATCCACCCCACCGTCATCCCGAGCACGATGAACAGCTGGACCACGTTGCCGGCTTGCAAGGGGTCCACGCCGACGAACTCGAGGCCGGACTTGAGGCCGTAGCCGNNNAGGGTGACGCCGACGCCGATCAGCAGCACGTCTTTCCTCGAGTACCCGAACTCCACCTTGTCATCCGTGGCTTTGGAGTCATCCACGCTGC | |||||||||
gi|207470845|gb|FF358506.1|FF358506 BG02031B2B07.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGACACATTGATTTATTTATTACACACTTATTTGGCAACACTGACAAGCCATGTACTCCCTACAAAGACTTATATTTAGAAACGGAGGGAGCAGTATATTATATCATCACGAACACCACGAGTTGATGTAGAAGACGTCCGGTCTCTCATGCACCCATCATGCCAGCCAGCCTGATGCATGCTGCATGTTGCACTACACGAGGGCGTAGACGCCTGCCTTCCCGATGCCGCACAGCCCGGCGTTTCCATTAGCCCCCCTGCTCATGAGGAAGAAGCCATTCTCGCCAAACGTCTGCCCCCACGAGTTCTTGACGACCCAGTACTTCTCCCCGTTCCTGACCCCATATCCCACCACGAGCACCGCGTGGTCAAGCGCGGTGCCGCATGGCCCTTTGTATATGCCGCTCTTGAAGTGCTGCAGGCTGCGGTCATGCGTGTCGATGCCGGCGACCGTCGGGCCCATCGTATAAACGGCCTCCTGCAGAAACCTCTCCCCTGACCTCAGTAGCTGCGCCCGGTAGACCAGGCCCCTGCGGGTGGCGTCCTTGTTGGTCCTGCACTGCCCCTGTTGTGCCTCATATGAGTACTCAGCCTCCTTCACGATGCCTCCCTTGCTCTTTATCCAGAGGAACGCCCTGTAGGGATTCCCACCCTTGCAGCCGCCGGGTTTTTGTGTCGAGTCACAGTCTAGTAGCTCCTGCTCGGATAGATCCAGTAGCTCCCCGGTTTTCCTTTTCAGCTGGCTTTCAACTGCTCCCACTGCGGCGAACGCCCAACATGCGCCGCATTTCTGTTGGTTT | |||||||||
gi|207438226|gb|FF353574.1|FF353574 BG02029B1H02.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): ACGCATTTTTTTTTTTTTTTTTTGGAATAAGTAATCTCATATGACTTGCATAAGAATAGCACCAAGATCCAAATCCATGTAGCTGAAGACAACAATCACTTGTAAGCAACTAATCAAAAATGATACTCCCTCGGTTTCTAAATATAAATCTTTTTAGTGATTTCCCTAGGGACTACATACAGATGTATATATACATATTTTAAAGTGTAGATTCACGCATTATGCTCCGTATGTAGTCCATATTGGAATCTCTAAAAGGACTTATATTTAGGAACGGAGGGAGTAGTACATAACTGATATTTATGAAGAAATGTCAGTCTATAATCTGTATGTTTACTGCAATCACTCAAGTGACTGTCCCCGACAAAAATCACCAAAAGTACAGAAAATGCAAGCAACACCTCTGTACGCACGCATGCATCCCACTTCGAGCTGCTCCTCCGCTCTCTCTACCGCCGGTGCCCCTCTGCGCCCTTCCAGTCCTCCTCCATGCCGGTCTATTTCCTATAGCAGGTCAATTCCTTCGGGTACCAGTGTTGGGACTATGCGCGTCAATATTTCCGCTTTCCACCGAGGAAACTCATGTCAGTCTTTTATTTTCCACTCTGATGTTTGCATGCTCTACACTGGGCATGAGGAAATATTTGTGTTTCCATATGCATCTGAAAGAAGGCAAATCAGNNNTCCAGACCACTCAAGTAAAATCTGATGCCTCAGNAATGAAAGCACAGTTGNNNTGATCCAATGTTGAAATTGGCTATCAACATGGCATTATGAAACAAGCAATTTCCAATATC | |||||||||
gi|207406466|gb|FF344585.1|FF344585 BG02012B2C03.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): ACGCATTTTTNNNTTTTTTTTGAATCCCTAGAAAGACATATAGTATTTAGGAACGGAGGGAATACACAGTAGTGCTGGTGCAGTATTTTTCGAGCGAGTCTTGTGTAGACAATGTCTGAGTTTTGTTGTCACGTTCCTCCGTGGATGGTTTATGTATCGCCTCCATCCATGGGAATCTTGGCAACTATTCTTCGGAGTATGACTCAGTGCTGCTGCTAAGAGCACTACTAGTATTGTGCTACAGATTCTTATAACAAAGGAAAAGCCATAATCAATCGATGCAAGCTATCCTAACAGTGTACTGGGCTAATATCATGATCGAGGTGTTCTAGGAGCTATTAGTTGGCAGTGGTCTGATCCTCCGTCTTCCTGTTGATGGTGATACCCTGATTCCTCCTCATCGGCGGCAGGCGTTCCTTCTCCTCCTCCACCTGCTCCAGCAGCACCTGCAGCTCCGCCTCTGACAGGCTCTCCAGCCGTTTCTCCATGACTTGCTTCTCGTAGTTCCTGAGCTGCGTGGCGTAGGTCATGTCCTTGTTGGCCACCCGGATCATGTAGGAGGAGATCCACCCCACCGTCATCCCGAGCACGATGAACAGCTGGACCACGTTGCCGGCTTGCAAGGGGTCCACGCCGACGAACTCGAGGCCGGACTTGAGGCCGTAGCCGAGGAGGGTGACGCCGACGCCGATCAGCAGCACGTCTTTCCTCGAGTACCCGAACTCCACCTTGTCATCCGTGGCTTTGGAGTCATCCACGCTGCTTCTCAGCGCCGACCGCCTCCTCTGTCCCNNNGGCCTCAGCAGCACCATCGATCGCAGCACAGCTTGGC | |||||||||
gi|207461873|gb|FF348987.1|FF348987 BG02013A2F11.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): CTCNNNTTCGAAAAAAAATGGGAATGAAGGGGACCACCCCAGTTGATTAAGAGGGGAGAGAATTATTACTCCCTCCGTTCCTAAATATAAGACCTTTTAGAGATTACACTGTAGATTACAAACGGAGCAAAATAAGTGAATCTACACTATAAAGTATGTCTATATACATCCGCCGTATCTAGTCCATAGTGGAATATCTAAAAGGTTTTATATTTGGGTGTGGCTAGGTCTCAGTCGACTGAGACTTAACCAAGTCTCAGTCAAGTGATATAGTATGTAAGAAGAAAAAAGAAAAACTGAAAATAAATTTTTGCACGAATCTCCATGCGAAATCAAAGGAAGATAGTATCGACTGAGACATAACGAAGTCTAAGTCGACTGAGACTTAGCAAAACTGTTTATATTTAGGAACAGAGGGAGTAGTTAGGAAAGTTAAATAAACGTTTGCCGAGTCTTTATAGGTCTAGCAAAAATTATTATTTGTACGTACTACGCAGTGGAATGGTGAGAGGAGATCCAAAGAAGAATGAGGAGCTGGAGCTGCCGAGAAAGGACGAGCTGAACATCTTGACGGCGATCTGGAAATGGGTCACCCAGCTTGTTTTCCCCAACGAACTCATTAAGACGTACCGACTAAAATGCTGATAAAGTCAATCCTACAATGCACTGCTTTAGAATATGAAATACTTGATGCATTTGTACGTACGCAGNNNTGTGGCGAGAGGCGATCCGAAGAAGCCTGAGGAGCTGGAGCTGCTGATAAAGGACTACCCGTACGCGGTGGACGGGCTGG | |||||||||
gi|207412871|gb|FF353340.1|FF353340 BG02029A2D05.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): GCATTTTTTCTTTTTTTTTTTCAGAAAAAAAAGCATCTTATATTTATGAACGGAGGGAGCACAAACTTATGTCTTTAGCATGGTTTGTTATCGTGTTGTCAAAATCGCTAGTTGAACTCCACTAGGCACTACCTATCCGTTACTTTCTGAAACTCTTGGTACACAATATCAAGCAGTAAAAGGAAAAGACATACTAATGCGTTGCATCTGAACATAAAATTAAAATAGATCAGACGCTGACATTAGGGGATGTTCATCTACTGATTACGAATTATAGTTGCTTTTCTTTTTCCTTTTGGTGCAGAAAGTATCGTGTGAATTTACATGGTTTAGTGTGAGCCTATCTACAAAGATTCTAAGAAGTTCCAGGAACAGGTGCAGGTGGGATCCTGAGCAGCTGCTGCAACAAGCGGGCTGCAAGGCGCTGCGAGACACCTCCAGCAATACGAGAACCAAACACACGGGCTTCACGCTCTTGTAGCACCTGTACAATTGGCTGCAAAAGATTTGGATCAAAGGTATCAGAGGATCTCAAAAGACCCCATATTCTGAGAACAGTGTCTCGTAGCTCCAACATTTGTTCCCGCTCAACATCACTTATCTTAAAGGGTCCAGCTGGATTGCCATTGGATATTAATGGCTTCAAAAATTCTGGAGCTGCGTTGTATGAATCAATCAGTGTTCCAAAGGTGATGGCTTCTGTGACACGAACCGCTTCTTTCACAACTAGCACTCTTAAATTCTCCCCATCTGGACCAAGTAGAAGTTTCAAAACCGGTTGTAGAGCATCCTTCGCTACAAACTCTCTAT | |||||||||
gi|207388351|gb|FF365718.1|FF365718 BG02045A1G02.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): AATATGAACTACATACGGAGCAAAATGAGNNNTCCTACACTTTAAAATACGTCCATATACATCATTATGTAGTCCATATAGAAATATCTAAAAAAACTTATATTTAGGAACGGAGGGAGTAGTATCTATGGTTCGGGCATACAAGCATTAAATATTTGTGCCCTCTTGTTCATTATTGTTCAGGCGGTTGATCTGGCAAAGCGGTTTTGTGATGGAGGTGCTCCTCGGGTAATCAACGGATGCCTTCGAACATATGTAAAGGATCACATGAACAATGGCACTAGTCAGGCAGCTGAATCAAAGCCATAAAGTTTCTGTAAATATGTATTACGAAGACGGATGGCATTGGTCTTGGCTTGAAAAAAGGATTGGCAGTTGAAACTACAGAAGCACGGACCCCATTCAGTTGTTTTATTGAATGGTGAACCTGGAATTAGGCAAAGAAGCTGGGCTCGTGAAGATCTAGAAATATCCTCAAATGTTTAACCGGTCCAGATGCACGACCTATATGCCGATGATGCACACTCGCCCGAAGCAACCAAAGGGTACTTACTATTTCTAACAGCTTTTGCACTCGCTGAACCCTGTGGTTCATTGGATGACAAGTGTTGTAAACTTTATGTGAATGTAAGATTGTACTGTACATCTGCT | |||||||||
gi|207425790|gb|FF344406.1|FF344406 BG02010B1D05.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): GTNNNGCTTATGGAAACCCCTTTAATATGTCCGTCCCCGTTGATCATATGGCTACTATTTAGCTACGATGGTGTTACCTTTAGCAGTCGTGGGTTTTTCAGGCTTTCTAGTCAAACTGAAGCAGTACATAGCCTTGCAGGATCGATGCTTACTCAGAAAACAGCGGAGTACAATGCGATGATGGCGAAGGAAACTGAAGAGGTAAAAAATAGCGTTTTCACATGTTTAGGAGATCAATTTTCACATCCAGTTCGCACCTATGGGCGTATGATCTTTCTATATGTGAGAACTCCACTTCAGTTTCTTCAGCTTAATACTCTCGAGACAAAAGATTCTTCAGTTTAATACTTTCGAGACAAAAAATTTCTTCAGCTTAAGGCATAATAACTACACTAGACGCTAGTGGAGCTACTCCACCTCGAAAATTTGGAATTGTATTAACCGTTTGGATAAGTTTCCCAAAATTCAGGTTTTAAATGATTTGCTCTGAGTATAGAAGAACCATGCTTAAGTTATCTTTATATTTTTATCCACTTTATTCCACTCTCAACCATGTACTCCCTTTGTTCCTAAATATAAGTCTTTTTAGAGATTCTAATATGGACTACATACGGAGCAAAATGAGTGAATATATACACTCTAAAGTACGTATATATTCATCCGTATGTAGTCCATATTCAAATCACTAAAAAGACTTATATTTAGGAACGGAGGGAGTATATTCGACATAGTGTCACTATAAAGTGCAATTAAGCTAGTCCATGTTGAGATTTTGATGGTGGAACACACC | |||||||||
gi|207392690|gb|FF359309.1|FF359309 BG02037A1E05.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): GCTANCCCNNNNAAAGGTTACTTAAATTTTTTATGCACACAAACTGACNTGGAAGATTATGATTGGTAAAAGGGGATGGAGGATCGCTGCATGCATCGCTTTGATGCAAAGGCCGGCGGTAATCCTCTTTTTCGAAAAAAAATGGGGATGAAGGGGACCACCCCAGTTGATTAAGAGGGGAGAGAATTATTACTCCCTCCGTTCCTAAATATAAGACCTTTTAGAGATTACACTGTAGATTACAAACGGAGCAAAATAAGTGAATCTACACTATAAAGTATGTCTATATACATCCGCCGTATGTAGTCCATAGTGAAATATCTAAAAGGTTTTATATTTAGGAACAGAGGGAGTAGTTAGGAAAGTTAAATAAACGTTTGCCGAGTCTTTATAGGTCTAGCAAAAATTATTATTTGTACGTACTACGCAGTGGAATGGTGAGAGGAGATCCAAAGAAGAATGAGGAGCTGGAGCTGCCGAGAAAGGACGAGCTGAACATCTTGACGGCGATCTGGAAATGGGTCACCCAGCTTGTTTTCCCCAACGAACTCATTAAAGACAGGTGTGGCGAGAGGCGATCCGAAGNNNCCTGAGGAGCTGGAGCTGCTGATAAAGGACTACCCGTACGCGGTGGACGGGCTGGAGATCT | |||||||||
gi|207459644|gb|FF357034.1|FF357034 BG02030A1G06.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTTCCTAAATATAAGAC EST sequence (targeted fragment marked with yellow): ACCGATTTTTTNNNTTTTTTTTTATTTAGGAACGGAGGAAGTAGTTACCAAATGAATTGTGCGAGCCAATATATACACATGTAACCAGCAAAGGAAATTACAGTATCTGATTACCAAATATTCAACCACAGAAATGGTAGCGTGTCACCAGGTGCAACTTAATTGTTTCAGTACTGCGCACAGAGCTCCTCAAATCTGGACAAGCTTTTAAGGAGAGGCTTTGGATTGTAAGGGAATAAATCTTTCTTATGAAGATCTTCCAAAGTTCGCTTTAACGAAAGGAGACATACTTTAGCACTCAGGAAAAGCTGTTCTTTGCTCTTACTTTCCTTGTCATGAGAGGAACCTAACTTAGTGCCTTCCATTGAGCTACCAGTGAAACTATTTATATCTTTCAAGGTTCTTTGCCTTTCACAGTTGAATTTTTGTATTTGTGCCTCGTAAACTGAATCATCGACAAAAGCATCCCAGCACCCGGATACCAGTCGTAAGCACCGTAATAGATACTGGGCACAATGCACACCTACATCTTTAGATATGAGATAATCAACAAGTACCAAGTGATCATAGTGCAACAACGAAAGCCATTGATGAAAAATATGAACTGGGTCAAAAACAATGGAGAACAGTTTGGCACCAATCAGTTCAGACGTCCATTTAGTTTCCATCTTATCTATTGCCAACGAAATAAGTGGAGCATCCAAAAGCTGCAAGAGAATGATGAATAACATATCGTCCTCCTCCATATATAACTGCAGAAAGCATAAAACAATGTCTGTTGATGATTTTGAGTCCAAAATCTTGTC | |||||||||