| mature miRNA: GCTCCCTCCATCCCAAAATAA species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207463889|gb|FF360779.1|FF360779 BG02035A1D06.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B GCTCCCTCCATCCCAAAATAA EST sequence (targeted fragment marked with yellow): ACGCATTTTTNNTTTTTTTTTTTATAGAAGAGTAACACGTTGAAAAATTTGCTGCCTCACTACATGATAGAATAAAGACGCACATGCGTACATACTTAAAAGTTACTTCCTTCGTCTCAATTGCTAGATACAATCGTTTGAGCGTCAATTAACATGGGATGGAGGGAGTACAAAGCTAGAACAACCATCCTTTTCTGTAAAAGTCCGACTAAGAAGCGGAGACATCAGCGGTTGGTTAAATCGTGGCTTCATGCACTCAAACTCGTAGGAACAAACACACACGAACAAAAAGAAGTCAAAACAGATGGCGGCTAATATAATGATTTGCCAGAGATGGAGGGAAATTTTCTTCTTGCCTTCATGCCTTCAAATATGTCTCATGAGGACATTGTACACTTCACCATCCAGCTATTTAGGGTATAGCTCACATTTAAAACCTCCATCAATTCTCTTTTGAGTTATTTCTCTTTTTTCAAAACTTGCAGAACAGAATCTGGTGTTCTCCTTCACTTCAAAGGCCTAGTGAATTCCTTTTCTTTGATCCATGCAAATCTCAGAGAGCAGTTAACATTACATATCATGCTAGCAAAAAACCACGTAGCACTTCTATATCAGGAGGAATACATAAGCAATTCCCGGTTGGCCATTCACGTGCACATATATCAAACTGCGTTCAGATATGTGCAGGGGGGCCATGGGGTGCGATAGAGGCATAGAGCTGGGCCGCGGCGCAGCTTGTGGAGGGACGGCTTGGAGGGGCATCACGGCCGCAGCTTCAGCATATGGGGGAGTTGG | |||||||||
gi|207372147|gb|FF350323.1|FF350323 BG02013B2C08.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B GCTCCCTCCATCCCAAAATAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTATCGAAAAGAGGAGCCAAATTAGTCGATGCTATTACACAGCACTCGGTGAGACCAAAACAGCTACTCCATCCGTTCCAAAATAAGTCCGTCCCAAAATAAATGTCTCAACCTTAGTACAACCTTATTTTGGGATGGAGGGAGCACTACGGACGAACAAATATTAGGTACAGCCACGGCGAAGCCTTGCAAATACTACTACGACACAGAAGACTCGCTTTATTAAACACAGGCTGAGAGTCTGAGAGACGAACCTCCCAGATTACATGACATAGCCTGACAAGCCAACGGCGGTACCACGTGACAGATCAGCACGGAAGATGCTGCGGTGGATTAGATGGGGATTGCGCCGGTGACGCGCGGGTACACGACCCTGGTCGGGTGACCCATGATGCGGCGGCCCTTGCGGTGGCGGAAAAGGTACACGGCGGCGCCCAGCGGCCACTCCACCACCCCGGCCACGACGAGCGCCACGAATCCCAGCGTCGGGCCGACCACCTTACACCGGCACGGGTTGCTCCTCGTCCCGCACTGCACGCAGATCGGCACGAACGCCATTGTTGTTGCTGAACCAGCCTCTGCTAGTGCTGTCAAATAGTAGAATGCTCGTGTTCGAAGTTTGATGGATGGATATATGCGCTAGAGATTGATGGTCCGCT | |||||||||
gi|207489037|gb|FF341423.1|FF341423 BG02009B1D10.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B GCTCCCTCCATCCCAAAATAA EST sequence (targeted fragment marked with yellow): CTGATTGTCATGCTGCGTGAAAATTTGTTTGGAGACCTTCTGATTTCACTTTTTTCTATTTAGTTAGCTAGAAAACCAGCTAGCTGTGAAGTCTGAGTTTTCAAACTGATCCGCAGAGGTGAAGAATTCTAAAAGCTTGTTTGGGAGCTTCGTTCTGGATAGAGGAGGACTAATTTGAACTAAAACCACGACACTTATTTTGGGATGGAGGGAGTACCTATGCTCCATCCTTTTTTTCAACTCGTTGTCCAGTTCTAATTATGTTCTGACTTTCCTTGAAGAAACTTTAAGTATTCTGATTATATTTGGGCTGTTCATTGATCAGCACTGTTGGAGGTTTTATTGGAAGATTGTAGAGTTGGAAAGTCTAGCAACACGTCAGTTGGTGGGGGGATTTGCTGAAGCAAATGGATCATCTGCTTCCCGGACGGTTTTGACTTCTGATTAATCCTGATCCTGAAGCATATTACTTGATTTGGTCTTTGTGGCAGCTTTCAGTTTGGACTTGCATTCAGTGGTTGTTTGGAGTTAGTAGTGTGCACATCTGATTCTTCCAACCGTCCTGAAGCATCTTGCTTGGTTTCTGTTGTGTGCCATCGGTATCTGCTTAAACCTGCATGTGGTTTGGATGGAATATGATCTCATCTTTTGCTCCGAATCAACAATGGNNATACCAGTCCATACTCAAAGTTTGTATAGGAGATTATCNNNTTTTGATTTGCCTATTAATCACTACA | |||||||||