| mature miRNA: TCCCTCTGTAAAGAAATATAA species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207382016|gb|FF349044.1|FF349044 BG02013B1A07.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): ACGCATTTTTTTTTTTTTTTTTTGTCATCATGCATGCGTTACATTATGCGAACAAGTCAAAAGTGTCACAAAAGTTATGCAACGGTGGCTAGTGAAAAGGGTGGTTTGGCTGGCTGCACCGCAGCATCCTCTCCTTGGTGGTGTGTGCGGTGGCTTTTGTGGGCAGTCAGGCTCGTGAGCGGGTTGTAATTCTTGTATATGGAAGTAGTGATCTAAACGATTTTATTACTATATTACTTTACAGAGGGAGGAGTTGTATGTAAACGGGGCCAGAGCAAAGGACGGCGCCATGCTATCTGCCGGCGGACAGCTCGACGGCGTCCTGGTTGTAGACGGAGTCCTCGCCCCAGTCGAACCGCTGCTGCATCCGCTCGTAGTCCTCCCGCCGCGTCACCTCCACCTGCTGCCACTCCTCCCACCGCTCCGCCAGCCCCTCCCCCTCCAGCATCCGCACCACCTCCGACATCGACGGCCGCTCCTCCGCCGACCCCTGCGTGCACAGCAGCGCGATCTGCATCATCATCTCCACCTCCGACCCCTCGAAGCTCCCCTTCAGGTTCCGGTCCACGATGCCCTCCAGCTTCCCTTCCCTCTGCAGCTTCTTCACATGATCAAGCAACAGCACGTCGTCTTCTTCCTCCAAGCGCGAAAAGTCGATGGCGCGCTGTCCAGTGACCACTTC | |||||||||
gi|207385482|gb|FF341793.1|FF341793 BG02008A1E03.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): ACCGATTTTTNNNTTTTTTTTTTNNNAAAGGCGACGGCCCTTTTATTTGGAATACAAGTGTTACAAATTTACAATCCCTTGTGGTAATCCTTTCTTAAATACTCCCTCTGTAAAGTAGTGATCTAAACGCACTGATATTTCTTTACAGAGGGAATAGTTTGTAGAAACAACAGCTGCCCAGTTTATCTCAGACATACTGTATGTAACCTTACACCACAAGCACAACAAGGGTCACCCTGCAGGTGAACACTGCACAAGGCAAAGGCCAAGCCTGAGCCCAATTATTGCCATGTATGTAACTGCACAAGGGTTCTAACATATATACGTTATGCTTGTGGCGGTGTCTACAGATTCAGTACTGCGAAGACCAATCTGCAGCGCTGCCTACCCGGGGAATGCCGGCGGTATCTTTCTTGGCCTGTTCATCGACCGTGTAAGTTGTGCCGCATACCTCCCCTTTGCTGTCGACCCTCGGCACCGGCTTCACCTCGTTCAGAGGATGCTCGTAGCTCTGCAGTCCCCCGGACGTCGTGAAGANGAAACCTTTGGGGAATGGTGCGAAGGATTTTCCACAAGCGTTCGTCACAATTTCAGCATCGTCGGAAACTACAAGATGACCCTCCGAATCGACTCCCCAGTAAAATGGGACGCCGCTATCAGCATCAGCAGCCATGAAGACCGAACTGGTCGAGCGATCATACAGCACAAATGCAAATTTGCCATTGAAGTCTCTCACGACTTGGTCT | |||||||||
gi|207520218|gb|FF344798.1|FF344798 BG02010B2B06.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTNNNTTTTTTTTTTTTGAAGACATGAGCCATGCATGAAATCTTATCGTGGAGAGCATTTCAGTACACGTAGATGGTTTCATCCTGATAGGAACTAGGCTCCATGTTCCTATGTAGATAAGCTTGTAATGTGGACAGATATCACCACGCATCGTGACTACAGTAAAACGTACTACTCCCTCTGTAAAGAAATATAAGTGTTTAGATCACTACTTTAGTGATCTAAACGCTTTTATATTTTTTTACAGAGGGAGTATCAACTATACTTCATCTATCCTTGTCTACGTACAGTACTGTCAATCACTGGTCTTCGGCAAGTACAGAAGAGGAATTTGGGGGGGGGGGGGG | |||||||||
gi|207512630|gb|FF366991.1|FF366991 BG02042B1E11.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTNNNNTTTTTTTTTNNNTAAACCTTCTGGAATCAAGATATCAANNTTTCATATCCCCGATGCACACCAAGGCAAAAGTGTAGTAGCATAGCGCTCCCTCTGTAAAGTGACCTAAAACGTCTTATATTTGTTTACAGAGGGAGTACCATACAAGGTAAGTAAGATATACAAACAACAATGTACATGAACCAATATATCCATCACCAAAGGAGCACAGATTGCAATAGTGCAGCACAATTCAATCTCTACTAACATAAACATGTTACAACTTGCCCTTTTTTCAGTATTACATAATCCTTGGACCTTGGCATTCACACATTGTTGGACCTTGACTTCTACCAAGNCGGGTATGCTTGGATGATGATCACGTACGGGGTCGAGTTCCTCGAGGGCCCCGGCGGCATGGGGGTCTACGCCTCCTGGGACATCGAGCCACTCCGCTGAGCCAGAGTGAGCGACGTTTCCCTTTCCTACTGGTGTTCATGTTTCAAATTGGACACACTACTTACATTTAGCCTGAAGAACGAACCACCCTGGTGGCGTGTTCGCAGCACCTAAAAACGGCCGGTCGGGGAGGAGGC | |||||||||
gi|207404805|gb|FF360709.1|FF360709 BG02035A1B03.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): CCGTNCCNNGCGACCGCCACCTGTGTACCCCCATGCCAACCACGGCCGCCGCACGATCCTTCTCATCGCCAGCACCGCCTCCTCTCCTCCACGCGGGATCACGGACCGCGGTCGCCTCCTTCCCGCGTGGACCGCCTCCTACCGTCGCCCTCTCCCTCTCGGTCTCCGCCTCCGCCCCCACCTCGCCGTGGGCGCCGGCGGCCAACCCCAAGTACCACAACGCGAAGGTGGATGCGGGAGACGAGGACGTGGACGGGGGCGATCTGCTGCGGCAGTTCACGCGGGAGGTGGCGCGCGCCGGTGTCATGCACGAGGTCAGGCGACGGCGGTGGCACGAGGACGCGCGGGACAAGCGCAAGCGAAAGTCCCGCGACGCCGCATGGAGGCTCCGCCGGAGGCGTTTCAAGGGTCCATATCCATTTGACGATGAGCAGGAGCCGAAGGAGGGAACCACAGACGATGATGGGTGTGACAACTGGGAGCTTCCTGGAGGAGAGTTTCCTTCTTTCAGATGAACCAAGAAGCTACATTTCTCGATGTTTTGTCTGATGAAGAATTCCGACCATGCTACTACAGTTATACTCCCTCTGTAGTGATCTAAACGCTCTTATATTTCTTTACAAAGGGAGTATATTTCTGTAGTTGGAGGAGGGAGGACTTGGCTAGGTAGGGTGAATTTCATGCATCTTCAGGATCGAAAGCTCTGTTATGCATGTTATGTACCTACTATATCT | |||||||||
gi|207448283|gb|FF365751.1|FF365751 BG02045A1H11.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): ACCGATTTTTTNNTTTNNNTTTTTTTTTTTCTACAAAGGCGACGGCCCTTTTATTTGGAATACAAGTGTTACAAATTTACAATCCCTTGTGGTAATCCTTTCTTAAATACTCCCTCCGTAAAGTAGTGATCTAAACGCACTGATATTTCTTTACAGAGGGAGTAGTTTGTAAAAACAACAGCTGCCCAGTTTATCTCAAACATACTGTATGTAACCTTACACCACAAGCACAACAAGGGTCACCCTGCAGGTGAACACTGCACAAGGCAAAGGCCAAGCCTGAGCCCAATTATTGCCATGTATGTAACTGCACAAGGGTTCTAACATACATATACGTTATGCTTGTGGCGGTGTCTACAGATTCAGTATTGCGAAAACCAATCTGCAGCGCTGCCTACCCGGGGAATGCCGGCGGTATCTTTCTTGGCCTGTTCATCGACCGTGTAAGTTGTGCCGCATACCTCCCCTTTGCTGTCGACCCTCGGCACCGGCTTCACCTCGTTCAAAGGATGCTCGTAGCTCTGCAGTCCCCCGGACGTCGTGAANANNNAACCTTTGGGGAATGGTGCGAAGGATTTTCCACAAGCGTTCGTCACAATTTCATCATCGTCGGAAACTACAAGATGACCCTCCGAATCGACTCCCCAGTAAAATGGGACGCCGCTATCAGNATCNNNAGCCATGANNNCCGAACTGGTCNNNNGATCATACAGCACAAATGCAAATTTGCCATTGAAGTCTCTCACAACTTGGG | |||||||||
gi|207470639|gb|FF349865.1|FF349865 BG02014A1D06.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): ACCGATTTTTTTTTTTTTTTTTTGTTCAAGCTGGTTTGTTATTCACTTAAAACCACGAATAGTACGTACAGAAGTGAAGTTATAAACAAAAAAGAATTGTGAAATACATATAACCAAACTGGGTCGGATGCATCGACGCTCTCGTACGGACATGAATGCCGAAGCTAGCTAGTTTTAGCTCTCTCTTGTTACATGGAACGGGACATGTGCATGACGACCTACCCACGGACTCTGCTCTAGAACATTCATGGCGGCTTCGTACCGAACATTTCTTCTGCCACGTATATAAACGCTTTTATATTAGTTTACAGAGGGAGTACATGTCATTGTCATGGCAACGGCAGCATTTGGGTTCGTACGAGACATGGCATGTACTACGGCGACATTTTGGTTTCGCCGCTATACGGCAACGGCCTGCATGCATGCATGGTCCCGACTCCCGACATGCTTCCTGACGCCGTGGCCGTTCAGGAGTCGTCGGTGGCCGCAGGCGGCGCGCGCGTGGCGGGCGGCGACGTGCGGCAGAGCGGGCAGCTCGGCCGCCGCCGGAGCCACTCGTCGACGCACAGCCGGTGGAACGCGTGCTTGCAGCCGGGCAGCCGCCGGAGCTCGTCGCCGTCCGCGTACTCCGCCAGGCACACCGCGCATGTCGCGTGCGTGTCCGTGTCGTCGGGCGGCTGGTCACCGTCGGCCGACGCTTCGGCATCGGCAGCAGCCATCTGGCCTTCGTCCCGTCGCCTCGCCGCCGNNNAGTACACCGTGGTCGTGTACGCGGCCAGGACGGCCTCGTCGATCCCTGTGGCCGCGCACCCGT | |||||||||
gi|207385990|gb|FF363073.1|FF363073 BG02037B2E06.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): AAATTNNTTATGTATATATTGATGCCTCTTTGTAGCATGTATTGTNNNCTCGCTGTATTCTCACTTCCATTGTATCTTGTTGGTACTGGTAGTTCATCTACATGAAATGCCTTTTTTTCTAGGTTTTAACATGTTTTATATATCAACCCCTTGATAATATTAAAGTAATTTAAATTAGCCGTTGACAATATTTTAGCTTTATCTGCTCTTGTGTATTTACCGCTGTACATACCCTATTCCATGCTAGGGCCTTGACACACTGATACTCCTTACGTAAAGAAACATAAGATTGTTTAGATCTAAACAATCTTGTATTTCTTTACAGAGGGAGTAGTAATTTTTTAACACTTAACTCTGTAGATAATTAAAATTCTTGGCATTTTTGTACTTGATGAAAAACTGAATGGTTAGATGTGGGAAACTGCATTTTGTGAGAAAAAGAGTTACAGACTTGTAGATAGGAAACATATATGTTTTGAGTACTTATTTTGCACATCTGAAATGGCAATGCTTACCATACAGTAAACAAAGGTCTAAATAAAACATTAACCTGATGACCACCAAAGTTGGTGAACTTACACTTGCAAGTTTTGTGGTAATTTTCCGTACCTTGTCACACATGATAATATAGGGTTTAATTCTTTGGGTTTTCTCAAATGATCAGGCACAGTGACGTACATTTTCAAGTTACGTGGACTATTGTTAGAATAGCTCTGCATTAGATTTACACTTCATTATCTCGTGTTCATGCTTTTGTCAATGTATGTCTTACTAATGCTA | |||||||||
gi|207385517|gb|FF344359.1|FF344359 BG02010B1B03.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCGCCCTCGACCTCCGTCGCCCCGGCGGCGGCAAAGGCCAAGGTTCGGGCCCATAAGGAGCAGGATGACGACGACGACGAGGAAGACCCCATGGAGGTCGACCTCGACAAGCTGCCCTCCGGCACCAGCGATCCCGACAAGCTCGCCAAGATGAATGCTTTGTTATCCCAATTTACAGAAGACCAGATGAACCGGTACGAGTCATTTCGGAGATCTGGATTCCAGAAATCTAACATGAAAAAGCTATTGGCGAGTATCACGGGCAGTCAAAAGATATCTATGCCAACAACCATCGTAGTATCAGGAATAGCAAAGATGTTTGTCGGCGAGGTCATTGAAACAGCTAGAATAGTTATGATTGAAAGGAAAGATTCTGGACCCATCAGACCTTGCCACATCAGAGAAGCATACAGAAGATTGAAGCTTGAAGGGAAGATCCCAAAGCGATCCGTTCCTAGACTCTTCCGCTAGGGTCGAAGCATCACTGCTGATGTAAGTCGTGCGTCATATGATTATCTCTCAGAGGCAAAAGGTTATGGTACCTGTAATGGAACTTCGGCTTTGCAATCTCCATGCGTTCCCACACTCACTTCTACTCCCTCTGTAAACTAATAAGTGTAAGACGTTTTAGATCACTACTTTAGTGATCTAAAACGCCTTATATTAGTTTACAGAGGGAGTACTCGCCATCACACGGAAGGTGATTGTAGGGAGAACAAAGAAAAATAGTAGCCGCAGCGTGATGGTATTTTATGGTGCTTGTTACTC | |||||||||
gi|207478811|gb|FF366711.1|FF366711 BG02044B2F02.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTTNNNNTTTTTTTTTATGTCCCAATATTCATGTATGTATGTATGNNNNTTTCTCTTATGTTTAGTTACAGATGGAAAGGAGAAAAAAAGGGCACACCAAGACTAAAACGGACAAAAAACAGGACATGGAACAGAAGAACAGGAGAACCAAAAAAAGAGTGTGACTAAAACAAATCTATAACATACACTTCCTATCTTTCTTTTCCTGTATACAGATTTTCCTTAGACCCCCCAACAATAATGCCTAACGAAAGGAATTAATCTAGCTAAATTAAGAATCATCTGAGGAAGAAAATGAAGATGATGATTTGTCTCATATTAATATATTCCCATCCCATGCACCACCTCCTGAGGCACCATGCAAGTTTATCTCTCTAGATCTCTCTCTTCTCCGGTGCTTTCTTTCTTCTCTCTTTGAATCTCCTCAGTGCTCCAAATAATGCAATGCATGCACGAGCCATGAATGAATAATCAAGATATGTGTAGGTAGGCATCAACAACCATTGTAGTCTCTCAAGGAGAACCGGCCGCTGCCGTCCGGCCCCTGGTTGCCGGCGCCGGCATGCTGCAGGCCCAGCGTAAGCGACACATCGCCGGAGACCGCGCCGGTCGTGGCGGGCCCGTACCTCATCCTCACCCCGGGCTCGAACCTCCCGTACAGGTCGTCCGCGGCACCCACGTGCGCGTCGCCGCCAAGGAGCTCCGCCGGGTCAA | |||||||||
gi|207514184|gb|FF342036.1|FF342036 BG02011A1G07.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B TCCCTCTGTAAAGAAATATAA EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTACAGAGGTAATCAGCAATATATCAGCCAACTTCCGACAAAGACATTTAACAGTTCAGCGACTTTGCTGCATAGCAGGACAAACAAGCAAACATAACAGCCCTTAACCGGCAACAACACGGTACACGAATCACACATAACTACCCTTAACCAGTACTATGTATCTCACCAGCCTACAGCCCTACAGGGTCTATCACATACAAGATAATCAACTCTAGACTGAAGTTAATTATGCAAGACGGCTAATCAAGTACAATGGTTCTGACCCTACTTCGCACTAGTGGTACTAGTGGAAGTAACTGTGAACTCAAGATCTTGCGTCTTTCTTCTGGATTTGGGTACTGCGAATCAGCCCACCTGAGCACAAAGTCATAGACGGCTTCTTCAGGTAAAACCCCGAGGTCATTCCTTGATAAGATGGCTACGATCCCTGCAAGAGGGATCCTCATCAGTTCGTCTTGGAACTTTGTTGACAGGAAATCCTTGTATCTTTCAGCAAAGAATTTCTTGGCTGCCTCTGCCAGGGCAGGTGCCATTGAAATGGAATATGGTAGATCTAGGCACAGCACTGCAGATTCTGGGGTCATAAGCAAGCTTGTGAGCCGCTGACCGCAAAGCTTAATGCAAGAAACGACCTCAAATTTGTCAGCGGCCATCAAGATATCAACCAGATGAGTGGGCTCAGTTGTTGGTGTCAACTTTCCACTATACATAAAATACAAAAGCTCCATGAAGGCATTTTCCTCTGAATC | |||||||||