mature miRNA: TCTCTTCCTCTTCCTCATCTT species: Quercus petraea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|295210468|gb|FN743508.1|FN743508 FN743508 WZOAQPAG Quercus petraea cDNA clone WZ0AQPAG8YD08CM1, mRNA sequence TCTCTTCCTCTTCCTCATCTT EST sequence (targeted fragment marked with yellow): CTCCAGTGGAACATCTTCAGGGTCATCTCAGCTTCAAAACTCAGGTTCTGAGGAAGACTTGCAAGCTTTGATGGATCAGAGGAAGAGGAAGAGAATGATATCAAATAGAGAATCAGCTAGGCGATCTCGAATGAGGAAACAAAAGCATTTGGATGATCTGGTGGCTCAGGTGGCTCAGCTCAGGAAAGAGAACCAGCAGATCATTCAAAGTGTGACTATCACCACGCAGCATTACACGAATATTGAGACTGAAAACTCAATACTGAGAGCTCAAGCCAGTGAGCTTAGCCACAGACTACAGGCTCTGAATGATATTATCAATTTCCTGAATGCAAACACTGGTGTTTTTGGAGCTGCTGGTGTTGGGGACTCGAGCACCTTCAGTACTGAGCCTATTGATAGCTTTATGAACCCATGGAGTTTGTCATATTTGAACCAGCCTATTATGGCTACTGCAGACATTTTAAATCAGTACTAGTCTCAATGGGCTTCTTGGTTGTAAAATAGAGCAAGAGAGAGGGATTTTATGTTAGTTTTTATTTAGTGCTTAAGCCTATTTGGCAAGAAATATCACTATGTGGGGGTGTGGTTAAGGAATAAACACTAGATTA | |||||||||
gi|295221103|gb|FN766228.1|FN766228 FN766228 WZOAQPAA Quercus petraea cDNA clone WZ0AQPAH19YF04FM1, mRNA sequence TCTCTTCCTCTTCCTCATCTT EST sequence (targeted fragment marked with yellow): TTGGAAATACTAATATTAGGCCAACTGGAAAGCAGCGAAACCTTGATAAAGCAACCAGTGCAGATAATAATCCAAATGCGGCTTCCATTACAGAGAGAGCTGAAGAAAATCCAAGCAGCTCTGAAATAAGAGCCAAAGAAGTTGTGGAATATATCCCTGTTCAAAATCAAGCAGCTGCACAGAAACTCCGCCAGAAAATGAGCAACCAAAACCAGGATGGGCGACAATATAAAGGTAGAAAACATAGGGGGAAGGGGAAACAAGAAGAAGAGCCAGTTGTTTACACTCTAGATGAATGGGAAAAGGGAAGAGGAGAGACAAAGCCTGTAACAAGAGATGGGTTTCCAAACATTAGTCGTGATGAGGATCTTGCATGGCAGCTTCAAAACCAATTTGATTTAGAAGATTCTCATGTACAAAGAGGCAGTCATGAAGCAGGGGCTGATAACTTGCTTATGAGTATGTTTAATTATGAAAGAGATGATGATAGGTCTCGTGGTACAGGACGAGGGAGAGGAAGGGGACGGGGAAGGGGAAGGGGAAGGGGAAGAAGATTTGGTTGACTTTCTATCCTTACTCTCTGTATTATCTATATCCTCATAGCATCTTTTGTGTCATTGTGTGTATAGTAACTTTTGTGGTTTTTTGGT | |||||||||
gi|295227585|gb|FN740537.1|FN740537 FN740537 WZOAQPAG Quercus petraea cDNA clone WZ0AQPAG8YD21NM1, mRNA sequence TCTCTTCCTCTTCCTCATCTT EST sequence (targeted fragment marked with yellow): TTCTGACCACTAGAAGCATTACAGGCCGAGGAAAGCAAAAATATATGCCTCAAGAAAATAGCAGTCAGTATATATACATATATATGTGCAAGTTCCCAACGTCAGACTCAACCTAATATGGACTCCAGTACTCTCTCTCTTTAACATTGCCCTTTATCATTTACAATTAATTTTTCTTTACAAACTATGAACCTTTCTTTGTGCATGTAATCCCAAAAAGACTAGGCAACTATAACATGCCGTCTCCTGTATCTTGACTTCCTAGAATGACCTCTTTGGAGCTTGCAGTCAATGGTGTAGAAAAATTTTCTTATTCCAGTGGGCCTGCTATTTCGTGTTTATTTACAACTGCTAAAGTCTCAGTAGAAAATAAAGACTCCAGATGATAGCTTGATAAAATCACCATCCAGGTTAGCTGTACAAAGTGTCTTTGGTGGTGGCAGAGGAAAAATGCCTTGTCTGGAGTTGTGATTCCTCAGGAAGAGGATGGGGAAGAGAAAGAGGTTGACAACCCTATTCGCCTTTCTCCAGTTGTGATGAGCTTCTCAACACGAGAAACTATATGTTTACCATAGGTATACCTCTTCAAGGCATTCAAGTGAACCTTGATGCGTGAAAGAATCAACTCAAGACTCTG | |||||||||
gi|295236893|gb|FN708306.1|FN708306 FN708306 WZOAQPAB Quercus petraea cDNA clone WZ0AQPAB13YM14FM1, mRNA sequence TCTCTTCCTCTTCCTCATCTT EST sequence (targeted fragment marked with yellow): ACAAAAACTCCATTAGCTCAAAGCGGCCTCTGCGCATCCAAGTCTCAAATCCAACAGAAATGAAGGTTGTCGCTGCATACTTGTTGGCCGTGTTGGGAGGCAACACAACTCCTTCCGCTGAAGACTTGAAGAACATCCTCGGATCAGTTGGGGCTGAAGCTGATGATGATAGAATTGAGTTGCTCTTGTCTGAAGTCAAGGGAAAAGATATCACAGAGCTGATTGCAGCTGGTAGGGAGAAGTTGTCATCAGTGCCTTCTGGTGGCGGCGCTATTGCTGTTGCTGCACCTGGTGGCGGTGCTGGTGGAGCTGCCCCTGAAGCTGCTGCTGCCGAGTCAAAGAAAGAGGAGAAAGTGGAAGAGAAAGAGGAGTCTGATGACGATATGGGTTTCAGCCTCTTTGACTAAGAGATTGGACTGGCTGGTTGTGTGTATGAAGGCTCTTTTAATCTAGCGCTTTTGATAGAATGTTACTAGTTTTTGTCTGTAGTTGGGTATGGTTTTAGATGTTGATGAGCTATGGTATTTTTTTTGGCTTGGATAACAAAGTTATATGAGACATTTCTTTTATAATTGTTAAATTTTGGATTTCTGTCAAACATTTTAGTTATAATTGC | |||||||||
gi|295225870|gb|FN770278.1|FN770278 FN770278 WZOAQPAA Quercus petraea cDNA clone WZ0AQPAA7YI04CM1, mRNA sequence TCTCTTCCTCTTCCTCATCTT EST sequence (targeted fragment marked with yellow): AACACCGAAATACACCGCCATAATTATAACCTTACTTAGAAATATATTTTACACTGTGCTAACATACAAAACACCCGTATTTCCGGGGTTCCTCATCATGAATGTTTTGTTTTTGAATGACATGGGAATGACAAAATGAACATATTTAGCAACCGGCAATCTGGGAAGTTTCAGGTTGAGGAAGAGGAGGAGGAGACATTGCCATTGATAATGATAAGCCATTGAGTTGAGGTCTAAGCTTGTTCTTCCACATATCTTTGTAACAACCAGTGTCGCCGCCTCTTTTTTTTAGCCTCCACCACCACCAACTTCTCCGTTAACCGGTAAACATCGACACCAAACACCAAATTACCACTCTGCCCTCCCAGCTCCACGCCCCAATCTTTCTTGCTCTTCACCTTCAACTTCTCCACCTTCGCAAAGTCCTCAATTTTC | |||||||||
gi|295169681|gb|FN741540.1|FN741540 FN741540 WZOAQPAG Quercus petraea cDNA clone WZ0AQPAG8YF12CM1, mRNA sequence TCTCTTCCTCTTCCTCATCTT EST sequence (targeted fragment marked with yellow): GCTCTCTCTCTGTTTCTGTTTCTGTTTGTGTAGCTCTGTATCAAAAAGAAGAGGAAGAGGAAGAGCTTCGAAATGGCATTGACGAACTTGATACTGACGGTGGCCGGTGTGAGTGCAGTGATATTACTGCTGAGGAGCGATGTCAAAAAATCTGCCACCATCTTTAGGCGCAACGTCAAGCACATCCGCCATTGGCTCGAAGAAGAATCCGCCTCTGCCTCCAAGTCAGCGGAGAAGGCAGTTCCCAAGGAATTGGAAACAAAGGTTCCTCCAAAAGACATTCCCAAGGAGGACAAACACTAATGTGTCTATATAGGGAGCCTGGTGTTGTCTACGTGAGTTACCTAGTTGCTCCTTTTTGCCTTTTTTTTTTTTCAAAATATTTTACGGTTTATTTAGAAATAGTCTTGTTGAAATGTTCGGGTATATTGTATGCACTTAAATTATCTTAATTCTGGTTTTAGTAGACTCTGTGGTCTCTACATTATTGATATGTATTATACAAAGAAGGCCT | |||||||||
gi|295171193|gb|FN737345.1|FN737345 FN737345 WZOAQPAC Quercus petraea cDNA clone WZ0AQPAC2YM16FM1, mRNA sequence TCTCTTCCTCTTCCTCATCTT |