| mature miRNA: AGCTGCTGCTGCTGTCGATCT species: Quercus robur database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|262516965|gb|FP074114.1|FP074114 FP074114 LG0AAD Quercus robur cDNA clone LG0AAD11YP23RM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): GTTTTAAATAAATATAAAAATGAAATGCTTCCATTTCAGCAACGGCGAGCGACGCGACGACGAGGACGGCGCCCCCGTCGTCGTCTTTCCGAGGGCCTTGTCGAAGGTGTCGTGGACGCGTTCCCTGAGCGTGGCTTCCACCGCCAGTGCCACGCTGGACACGAGACGCTCCGAGTTCGACAACAGCAGCAGCAGCAACAACTACAACTACTACGACTCGCGACTCGGAGGTGGTGGAGACTTTTCTGACTCGGCCGTGTTTCACGAGTTCCTGAGTCAGCGCCGAGCCAACGATCTGCGAGTGTTCAGCTTCTCGGAGCTGAAATCGGCGACCAGAGGGTTCAGCAGGTCGTTGTTGATTGGGGAAGGTGGGTTTGGGTGCGTCTTCAGAGGCCTCGTTAGGGTTTCTGATTCCAAAATCGAAGTCGCTATCAAACAGTTGAACCGTAACGGTTTCCAGGGCCATAAGG | |||||||||
gi|262500389|gb|FP061538.1|FP061538 FP061538 LG0AAD Quercus robur cDNA clone LG0AAD36YH18RM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): AACACCTTAACCTCCAAAGACAACACAACAACGACGATGATCATGAAGAAAACGACCACAACAACAACAATATTCCACAAGAGCTCGAGCTGGTCAACCCTAACCCCACTGGTTCAGGCGATATTGGGGGTCGCAGGCCAAGAGGTCGACCCCCAGGTTCCAAAAACAAGCCAAAACCTCCTGTGATAATCACAAGAGAAAGTGCAAACACTCTCCGAGCTCATATCTTGGAGGTCACAACCGGCTGCGACGTGTTTGACTCCATCGCCACCTATGCTCGCAAGCGTCAACGTGGGATCTGTGTTCTAAGCGGGACGGGGACCGTCACAAACGTAAGTCTCCGGCAACCCTCAGCTTCTGGCGCCGTTGTCACGCTACCAGGCCGTTTCGAGATACTATCACTGTCAGGTTCTTTCCTACCACCTCCTGCTCCGCCTGGCGCCACTAGTTTGACCATATATTTGGCTGGAGGACAAGGGCAAGTCGTCGGAGGTAACGTCGCCGGAGCTTTGATCGCCTCGGGACCCGTAATCATCATTGCTTCGTCGTTCACTAATGTGGCTTATGAGAGGTTGCCGTTAGATGAGCAAGAAGAATCATCGCTACAGCAAGATCAGCAGCAGCAGCAGCAGCAAGTCTCACAATCCTATGGTGGTGGTGGAATTAATAATCCCATTCCGGACCCGTCTTCGGGGC | |||||||||
gi|262507983|gb|FP052980.1|FP052980 FP052980 LG0AAD Quercus robur cDNA clone LG0AAD5YI18RM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): GCAGCAACTACTACAGCAACAGCAACAGCAACAGCAACAACAACAACATCAGCAACAACAACAACTGCAACAACAACAACAACAACTGCAACAACAACAACAACAACACCAACTGCAACAACAACAACAACAACAGCAGCAGCAACAACAACAACAACAACTACAACTACAACAGCAGCAGCAGCAGCAACAACAGCGGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAAAGCCAACATCCTATGATTCCACAGCAGCATACCCAGTTCCAGAGGTCACCTATGATGCTTGGACAAACTACACTTTCACACTTCGGGCAGAATCCCAGCATACAGTTGAGCAACAGCAGGGCTTCCCAACTTCAGGCGTTACAGCAGCAACAGCAACAGCAACAGCAACAGCAGCCACAAATGCAAAGGAAAATGATGATGGGACTTGGAACAGCTGTGGGTGTGGGAAACATGGGCAATAACATGGTTGGTCTTGGGGGCCTTGGCAATGCCATGGGCATGGGAGCTGCTAGGGGAATAGGAACTGGAATGTCGGCACCAATGGCGCCTATTTCTGGTATAGGGAATGTTGGCCAGAAAACAATGAATCTTAGCCAGGCTTCCAATATTACCAACGCAATAAGCCAGCAAC | |||||||||
gi|295199269|gb|FN702008.1|FN702008 FN702008 WZOAQRAR Quercus robur cDNA clone WZ0AQRAR6YL06NM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): TTTACTCTTAGTTAATAATTTCTTGACAAGTAGATCTAAGTCTGCTTCAGCCACTTTTCAATCTGAAAGCTAAACAGAGAACAAACATACTGTAGAGCATACAACACAAGACTAAAAAGAAAAAAAAAACACACACACACACACAGAAACAGGGGTGTCATAATATTAGAGATACACCAAATTAAGAAACTGCAAAGCATAAGCAGTTGGGAAATTGGAATTCAAATGTTCATTTCTTCAAGAAACCTTGAGCCATCTTCACGTAGTCCCCAGTCCCACTTTCAGTATTGCCTTCACTTTCATGATCACCAGCAGCGGCAGCTGAGTGTGGTTTTGAGTCAGTGGTAGTGGAATGGGATTGGGATTGGGAGGAGGGGTTGCCATATTGGTCGAGATAAGTCTCAGCCTTTTCCACATACTTGCCATAGCTCGTTTCTTCCAACTTTCCATAGCTAGAGGCAGCTTCCAAAAGATCACCAGCTGCTCCAGCTGCCCTGGCCTTGTCAACTTTGCCAGCTCCCTGGCTAAAAGCGGTCTGGCCTGCCTCGGCTAACAACTTGGCACTGGCCATGAGCTCAGAGTTTGATGGTTGGTGGTGTTGGTGTTGGTGTTGGTGTTGGTTTTGGTTTTGATCATCCTTTTCTTCAGGGAGGGGAGTCTCAGAAAAACTGTTGGATTTCTTCTGAAGATCTGAAAGAAAGTCCATTCTGTTTGTGAGAGAATCTGAATGAATTGGAAGAGGGTTTGCTTTGTAAATAGTTGTTGGAGATC | |||||||||
gi|295229421|gb|FN754117.1|FN754117 FN754117 WZOAQRAP Quercus robur cDNA clone WZ0AQRAP4YB06FM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): ATGAGTTTTTATGCTCCCCCTAATTTTCCAATGCCAATACACCCATCTAACTTCGCTGTGATGGCTCCTGCACCAATGGGTGGTGCCAGTGGCACCAATAATGCAAGTGGTAGTCATAATGAAAAGAAACAGCAGCAGCAGTCACATCAGCAGGGCTCAAAGGCTGGAGTGGAGCCTCAAGCTTTTGCCATGTCTTTTCCTTCCATTAATGGTACTAATACCGGGCCTAGCATTGACATCTCAACCATTCCACAGAATCTTCCTTTTCTTCAAAATTATCAGTATATTGCTGCCCCGCCGCAGAAGAGGAATTACCGTGTTTCTGAAGAAGGGAAAACTGGAGGTGATTCTTCTATTGTTGAAGAAGAAAGAAAAGCCATGCCAGGAAAGGGTCAGTCAATAGTGGGACAGTCTATTGCTTTCTCCTCTAGGCCAGATTTGACTGATACATCCGTTACCACAATAACGGGCAATACTGTTGTTGATAGCTCTGCAAGAACTCTTAATCTTGGGTCTGCTACTGCACGGGCTTCTGGTTCTGTTATGCCTACTTCCATTAGCAGTGTTACTGCTTCTCAGCAGCTAATGAATCAGCGGAATCCACAGCAGCAGCAGCAGCAGCAAATGATTCTGATGCAGAAGCAGAATCAAATTGTACAGAATCAAATTGCGCAGAATCAAGCAGCAGCAGCAGCAGCTCGGAGCAAAACTCAGGCAACGAGTA | |||||||||
gi|295187238|gb|FN752898.1|FN752898 FN752898 WZOAQRAP Quercus robur cDNA clone WZ0AQRAP13YO15FM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): TCCAGGCCCTTCTAGTCTTTCAATGATTGGTCAGACTTTAAACCGGACTACCATCAACCCAATGCAACGGGCCATGGGGCATATGGGTCCACCGAAGTTGATGGCGGGGATGGCTGGGATGGGTATGTACATGAACCAACAGCAACAACAACAGCAGCAACCACAATTACAGCAGCAACAGTTACAACAGCAACAGCAGCAGCAGTTGCAGCAGCAGCAGCAATTGCAGCAACAGCAATTGCAACAGCAGCAGCAACAGCAACAGCAATTTCAGCAGCAGTTGCAGCAACAACAGCTACAGCAGCAGCAAGAAACCACCTCACCACTACAGGCTGTCGTCTCACCTTCGCAGGTGGGCTCACCATCGACCATGGTAATACCACAACTGAACCAACAAATGCAACAACAGCAAGCTAGTCCTCAGCAAATGAGTCAACGAACACCAATGAGCCCTCAACTGAGCTCTGGGGCAATCCATGCCTTGAGTGCTGGTAATCCAGATGCCTGTCCAGCTAGTCCACAGTTGAGCTCTCAGACCCTCGGTTCAGTTAGTAGTATTGCCCACTCTCCTATGGACCTACAAGGTGTGAATAAAGCCAATTCTGTAAGTAATGCATAGTGAAGCACAAAAGTATCAGGGTTTGCTTCAAGTGCTGGTTCAAAGCCTTTGTTGGGAAGGTCATTTTTAG | |||||||||
gi|295235436|gb|FN722057.1|FN722057 FN722057 WZOAQRAQ Quercus robur cDNA clone WZ0AQRAQ21YM03FM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): AAACCATTTCATAACTCCTCTTTTGGTCTCTCTCTCTCTCTCTCTGTCTCTGTGTCTCTCTCTCTCACAGACCCAAAAAACCAAAACTTTAACAAAGAGGGAGAGAGAAACCAAACCCAAATCCCACAAAACCTGAAACTTTGAGCAAAACCCATATGGCTCAACAACAAACCAATGGTTCTGCTGATATAAATACACAGCCACAGCAGCAACAACAGCAGCCACAACAACAGCCACAGCCACAACAACAGCAGCATCAACAGCAGTGGATGCAGCAGCAGCAGCATCAGCAGCAACAATGGATGGCTATGCAGTATCCGGCGGTGGCTATGGCGATGATGCAGCAACATCAGCAGCAGCAAATGATGATGTACAATTACATGCCTTATGCTGCTGCAGCTGCTCATCCTTATCATCATCAGCATCAGCAACAACAGCAAGTTCATGTTCAACAACAACACCATCAGAATCAGAATCAGGGTCAGAAGTATCAGAATCAGAAACAACAGCAACAGCAGCAGCAGCTGGGGTCCACTGAAGAGGCCAAAACTATTTGGATCGGCGACCTACACCATTGGATGGATGAAACTTACCTCCACACCTGCTTTTCTCATACTTCTGAGGTCTCCTCAGCAAAGGTCATACGCAATAAGCAAACTGGTCAATCAGAGGGATATGGTTTTGTTGAGTTCTATTCTCATGAAAC | |||||||||
gi|295223964|gb|FN753311.1|FN753311 FN753311 WZOAQRAP Quercus robur cDNA clone WZ0AQRAP9YL01FM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): ATGCGAAGACAGAGAAGCTGGATGCACTTCTTGCTGCCGTTAACAACAATGACACTAGCCACATTGTACATGTTCCACCTGGCCCTAATGCTCTTTCTGATGTACTTATAAGTACACCCATCTTCACTGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGCAGCAGCTGCAGCTGCAGCTGGTGGAGTCACTGGTTTTGAGTTTGGTGTGGATCCCAACCTGGATCCTGAACTGGCTCTTGCTCTGAGAGTTTCAATGGAAGAAGAGAGGGCGAGGCAAGAAGCAGCTGCTAAAAAGGCTGCAGAGGAGACTTCTAAACAAGAAAAAGAAGAGGGACAGCCATCTGGAACACAGGATGCAACAATGACTGAGCATGCAAGTGTTGGAACTTCTGAAGCTGACAATAAAACAACTGATTTAATGGATGATGACAATGCTCTGCTACAGCAGGCCCTTGCAATGTCAATGGATGAGCCTGCCACGGGCCATGAAGTTCGAGACACAGATATGTCTGAGGCAGCTGCAGATGATCCAGAGTTGGCACTAGCTCTCCAATTATCGGTACAGGACAGTACAAGTGATTCTGGAGACCAATCAAACATGAGCAAGTTATTGACAGACCAGTCTTTTGTTTCTTCTATCCTTGCAT | |||||||||
gi|262525914|gb|FP068265.1|FP068265 FP068265 LG0AAD Quercus robur cDNA clone LG0AAD25YC08RM1 similar to B0D5L8_LACBI Predicted p AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): GGCCTACTTTGTGGCAGCAGCAGCCGGGTAATGGTGCTACGCAGTTGCCTGGCTCTACTGCTTGGGGTCAACAACAGCCTGGTTCTGCGGCTTGGGGTCAGCAGCAGCCTGGCTCTACTGCTTGGGGTCAGCAGCAGCCTGGCTCTGCGGCTTGGGGTCAACAACAGCCTGGCTCTGCGGCTTGGGGTCAGCAGCAGCAGCAGCCGACGGTCAACGCGTCTACTACGCCTTGGTCGAGCAGTTCTGCTACGCCGTGGTTGTTGCAGACGCCTGGAGCGCATAATACGCCTTGGCAGCAACCGAGTTCTGCACCGTGGCAGTCTTGGCAGCAGCCTCCGACTTCTGCTCCATGGCAGTCGGGGAGTACGCCTTGGCAGCAGTCTATCAATGGGCCGTGGCAGCAGCAGCAGGGTAGTCTTTCTACTCCCTGGCAGAGGGCGAACAATGAAAATATGGAGCAGGCCTTTGC | |||||||||
gi|295157094|gb|FN699609.1|FN699609 FN699609 WZOAQRAR Quercus robur cDNA clone WZ0AQRAR5YO02NM1, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): GAGCATTACATCACTAGGGGAAATCTAGATACATAATTACAATAACATTACAGCTGAAAACTACCGATTCTAGCTTTTACAAACATAAGGATCATTCTGTATACTACAATCAGGAATAAGTATACAAAAATACAAGCTTGCAAGCTGCAACTCATCTCCAAATACGGCAAACCTCAGTTCGAATATGGGCCAAAATTTTGCCTGGCATGTCAATTTCTTACTCCCTGAACATCAAATAAGCTAAGTCAGACCAACAACACCACAATGTGGTTGTTATGTTTGACAGCACAAATAAAGAAGTTGATTTTTTCCTAGCTAGTACCTATATATTACATTAGTTTATTCTTTCTTTTTAAAGAGAAAGCTCAAGTTCCCAAGATACTGATGATGTTCTAAATAGCCTGTATCAAACACAAGTGCACACAGAGAAAGGGAAGAGGGTAAAGGCAAAGGGGAGTAGATATAAGCAGCCATTGTCAACAAACCTCCAATCCAAACTTTCAAAGCATGACTGCAGCAGCAGCTGCATTCTATCTTGAACAATATTCTACCTAGATTGTATACAAAATCCACCCTTATGCAGGTGCACATTCGTTAATTATAGAGCTATTGGTATGTAGCCAACTACTAGGGTTCAGAAATGAGGAAAAATTATTTAGTACTCCCAGAGTAAGAAACATGGTACTCCCCTCCTCTTACATGAATGGTAGATCCACCATTTATGTGAGAGAGTATCATGTCACTTTACTCATGGAATATAGAATAATTACTCAGAAATGAGT | |||||||||
gi|306755644|gb|FN999712.1|FN999712 FN999712 WZ0AQRAN Quercus robur cDNA clone WZ0AQRAN3YF03FM2, mRNA sequence AGCTGCTGCTGCTGTCGATCT EST sequence (targeted fragment marked with yellow): TGAACAAAGAAACCAAAAGCATCCCACTGAGGTCCTTCCCAGAAGTCAGGCTTGTCACCCGGAAGCTCTGGCAACACATATCCATCGGCAGCAGCAGCAGCAGCAACAGCACCATCTTCAAAAGAACCTACTCCACCACCGCCTTCAATACTGTTAAACTTATTGTCCACCAAGTCATTACGTTGCTGGTTTTCATCTTGGTCCTTGGTTGTGGTGTTGCTCCTCCGGTTCTTGCCGTCGAGTCGTCCGGTTCTGGAGGAGAATTTCTTGGCTGAGACTACGTGGAGAGTGGTGGTTCTGGTTGAGGGTGGGAAGAGGAGGTGGCGCTTGATGGGGAGGCTGGTGAAGGTGTGTTTGGTGGGGTTTCTGTAGAGGATTCCACCTCTGCTACTGCCACAACCACCACCACCGTTGGCTATGGTTAGAGCCATTGTTGAGTGAGTGATGAGAGAGTTGTGAAGTGTTTTATTACTGGCTGTGAGTCCCCGCGTACCTCGGCCGCGACCACGCT | |||||||||