| mature miRNA: GGAAGAGGCAGTGCATGGGAA species: Raphanus raphanistrum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|167491119|gb|FD970404.1|FD970404 RR2G271TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence GGAAGAGGCAGTGCATGGGAA EST sequence (targeted fragment marked with yellow): TTTTTAATTAAATTCTAATTATCTTTTCGTCTCATCTTCTCCAACGCGTGAGACGGACCTAGATGTGATCCCAATTCACTCAATTGAAGTCTTTGCAAGGATTTGTTTCTCAGCAAGTTCACATGGAGACTCTATGGACACTTTTGTATCTGTTAGAACCTGCTCCAGCTACTCTCATTCTCACAGCCGTCACCGTCACATTCGCATCTGCCTTCCGTGCACTTAACTACTCCAAAGAGATGGAGAGAAACCGTGACTTCTCCGAAGCTTCCATCACACTAGACACCTCTCAAGCCCTGATGATCCCTGTCATGAGCTCTTGCAGTTTGCTTCTCATGTTCTACCTCTTCTCTTCCGTCTCTCAGCTCCTCACCGCCTACACAGCCATCGCCTCCGTCTCGTCTCTCTTCTTTTGGCTCTCGCCCTACGCCTTGTATGTCAAGTCCCAGCTTGGTCTCTCTGATCCTTTTCTTTCACGCTGCTGCTCTAAGTCGTTCACTAGAATCCAAGGAATGCTGCTTGTGGCTTGTGCAGTCACGGTAGTGGCGTGGCTCGTCTCTGGTCATTGGGTGTTGAACAACTTGCTTGGGATCTCTATCTGCATTGCTTTCGTCAGCCATGTTCGTCTTCCTAACATCAAGACATGTGCTATGCTCCTCCTGTGTCTCTTTGTGTATGACATATTCTGGGTCTTCTTCTCCGAGAGATTCTTTGGTGCTAACGTTATGGTGACCGTGGTAACTCAGCAAGCGTCGA | |||||||||
gi|167498435|gb|FD980040.1|FD980040 RR3GJ50TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence GGAAGAGGCAGTGCATGGGAA EST sequence (targeted fragment marked with yellow): GGAAGCCTTTTGCAAGGAATTCAACAACGCGTTTAGGGTTTTCTCAGCAGGTTCACATGGAGACTCTATGGACACTTTTGTATCTGCTAGAACCTGCTCCAGCTACTCTCATCCTCACAGCTGTCACCGTCACATTCGCATCTGCCTTCCGTGCACTCAACTACTCCAAAGATATGGAGAGAAACCGTGACTTCTCCGAAGCTTCCATCACACTAGACACCTCTCAAGCCTTGATGATCCCTGTCATGAGCTCTTGCAGTTTGCTTCTCATGTTCTACCTCTTCTCTTCCGTCTCTCAGCTCCTCACCGCCTTCACAGCCGTCGCCTCCGTCTCATCTCTCTTCTTTTGGCTCTCGCCCTACGCCTTGTACGTCAAGTCCCAGCTTGGCCTCTCTGATCCTTCTCTTTCACGCTGCTGCTCTAAGTCGTTCACTAGAGTCCAAGGACTGCTGCTTGTGGCTTGTGCAGTCACGGTAGTGGCGTGGCTTGTCTCTGGTCATTGGGTGTTGAACAACTTGCTTGGGATCTCTATCTGCATTGCTTTCGTCAGCCATGTTCGTCTTCCTAATATCAAGACATGTGCTATTCTCCTCTTGTGTCTCTTTGTGTATGACATATTCTGGGTCTTCTTCTCCGAGAGATTCTTTGGTGCTAACGTTATGGTGACCGTGGCAACTCAGCAAGCGT | |||||||||
gi|158641490|gb|EX751381.1|EX751381 RR1BW52JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence GGAAGAGGCAGTGCATGGGAA EST sequence (targeted fragment marked with yellow): ACAGTTTAGAAGCTGTTAGAAACAAATACAAGCAGCATAAGTTCAAGTGCGTTGGGACCATGCCTGTTTCCCCTGAGCTGCCTCTTGCTTTTTTTGAAGATGTTATAATCAGAGAAAAGGCTTAAAGGAACTCGAAGCTTTATGTGTTTGTACATGTCATTAGAAGTTGCAGTTTAGTATCAAA | |||||||||
gi|167496544|gb|FD979109.1|FD979109 RR3G845TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence GGAAGAGGCAGTGCATGGGAA EST sequence (targeted fragment marked with yellow): TCTTTCGCAGCCGCCAGTCGCCACCGCGATTCTCGTCATCGGAGTCTCTGTCTCCTCCCCTTTCATCGACTGCGTCTGTTACTGAACTCAAGACGACGTCATGACCATTTTCTCAGTTCAGTCCACTATCTTCACCCGAGCTTCCGTCGCTATCCTCTCTAGCAATGGACTCAAACGCTTCTCTTTCGCTGCTTCTTCCTCCTTCTCCTCAAACGCTCTCTACTCTTCCCCTCTCCCCAAAACGAAGAAGCGGCGTTTCCCCATCGTCTCCGCCGTCGATATCGGCGGCGTCACGATCGCTAGAAACGATGTGGTGAGAGATGATGATCCTACAAACAATGTACCAGACTCAATCTTCTCCAAACTCGGAATGCAGCTACACAGACGCGATAAGCATCCTATTGGTATCTTAAAGAACGCTATTTACGATTACTTCGATTCCAATTACGATAAACAGTTTGACAAGTTTGAAGATCTTTCCCCTATTGTTACCACCAAGCAAAACTTTGATGATGTCCTGGTCCCTGCTGATCATGTTAGCAGAAGCCTTAACGACACGTACTATGTTGACTCCCAAACTGTTTTGAGATGTCATACGAGTGCTCACCAGGCTGAGCTTTTGAGGGAAGTCGTAGACGTTTCCTTGTTACTGGTGATGTTTACCGTAGTGACTCTATCGACTCTAC | |||||||||