miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCTTTGCTTCCCCAATGCTG
species: Raphanus raphanistrum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|167476229|gb|FD959216.1|FD959216 RR1G701JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
||||| |||||| ||||| ||
AAGAACCGAAGGAGTTACTAC

EST sequence (targeted fragment marked with yellow):
ACGGTCGCGCCATCCGTTACCCTGACCCGCTCATCAAGCCCAACGACACCATCAAGCTCGATCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGATGTCGGCAACGTTGTGATGGTTACCGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAGCATAAGGGAAGCTTCGAGACGATCCACATCCAGGACTGGACGGGGCATGAGTTTGCGACGAGGTTGGGTAATGTGTTCACCCTTGGCAAAGGAACAAAGCCGTGGGTGTCTCTTCCCAAGGGTAAAGGTATTAAGCTTACCATCATTGAGGAAGCCAAGAAGAGGCTTGCTGGTCAACAGGCTGCTTGATTTTTGTGATGTTTCCAGCTCTTTTATTATGTCCTTTTAGACGTTTTACGTTTTCGTAGACTCGCTTCGCTTCTTTTTGTTTTGGAACTTGTGTTATTT



gi|161514719|gb|EY894766.1|EY894766 RR1DN88JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
|||||||||||| |||.. .|
AAGAAACGAAGGCGTTGTTGC

EST sequence (targeted fragment marked with yellow):
TTGGCTTTACCTCTAACGTCTCTGTGCCGCAGCCATCACCTTATCTTCAGCAGCAAGCGTTGTTGCGGAAGCAAAGAAGGTGTTGGACTCCTGAGTTGCATCGCCGTTTTTGTTGATGCATTGCAACAGCTCGGTGGTCCTGGAGTTGCAACTCCTAAGCAAATTAGAGAGCATATGCAAGAAGAAGGCTTAACCAATGATGAAGTGAAGAGTCATTTACAGAAGTACCGGTTACATATCAGGAAGTCTAATTCAATTCCGGAGAAACAACCAGTAGTTGTTTTAGGGTTTAATCTGTGGAATTCATCATCACAAGATGAAGAAGAAGGAGGAGAATCATCAAAGAGAAGCAACTCGCAGTCAGATTCTCCCCAAGGTCCATTGCACTTACCTTGTACAACAACTACTACTACAGGTGGAGATAGTAGCATGGAAGATACTGAAGATGCTAAATCTGAGAGCTTTCAGATTGGGAGAGATTAAAATCTCCATAAATCTCAAAAATCAAGAACCAAATTCTTGATTCCAGTTTTTGGTACTTTAGATTCACACTACTATTGCTAGTAGTAGTGAATGAGAACAATAATTATAGAAAGGATATATAGAGAAAGTGAGAGAGCAAAAGAGTGAGGATGGTTCAAATAATTTTTGTGTACGGCATTTTTGGTTGGGTTTTAATTGAGGTATTACTCTTGTAGTAAAAAAAAAAAAAAAAAA



gi|161549951|gb|EY922176.1|EY922176 RR4DC53TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
||||||||||||||| |||||
AAGAAACGAAGGGGTCACGAC

EST sequence (targeted fragment marked with yellow):
GGGCCGCGAGCTTTCTTCTTCATCTAAAAAAGAGAGAGAAAAATCTGTGAGAGAGAGAGAGAGAGACAGAGATGGCGAGGTCGAGGAGAAAGTACAAGAACTCGAGAGCCAAAGTACGCGTCGCTCTGCCCAAGAAAAACCCAAACATCTTCAAACCAGCTTTCAACTTCCCTCCCAAGCTCGCTCTCATGGCCGACGACGACGTCCCCGAGTGGGACGACCAGGCTAGCGTCATCCAGAACTACAAATCCTTCGGCGTCATCTCTAACCCTAATCTCCTCGGTATCCGCTCCCGCACCGAGCACATGATCCAGGACGACTCCCTCAACGTTCCTCCCCCTCCTGAGCCGCCGACCGATGATCCTATCGCCAAGGAGTTCGAGCCCATCGATTCCGGCAGCGAGCTCGAGGAAGACGATCTTAAGACAGCACTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCCCTTACTACTATGCAACGTACTCATATCAGACGCTTGGTAGAGAAACATGGAGATGACATTGAGGCCATGTACCGAGACAGAAAGCTAAACTCGATGCAGCATTCGGTTGCAACTTTGCGGAAGCTATGCACTAGATATCTCATGTACAAGGATAAGAACCCTGTTTTAGTTCCATTCTGATGGAAAAGAAAATTATGCATCACATCTTTGTCTCCTCTGCTCTCTCTCATTTTTGTTATAATCTTACAACAACCCTGCAACAATATGTTATCAAGTTTTCTATAAAT



gi|154167768|gb|EV539042.1|EV539042 RR2BD12TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
||||| |||||| ||||| ||
AAGAACCGAAGGAGTTACTAC

EST sequence (targeted fragment marked with yellow):
TCGACAAACTTGGTGGTGCTTTTGCCCCCAAGCCATCATCTGGACCACACAAGTCTAGAGAGTGCCTTCCCCTCGTTCTTATCATTAGGAACAGGTTGAAGTACGCTCTTACCTACCGTGAAGTCATCTCCATCTTGATGCAGAGGCATATCCAGGTTGACGGCAAAGTCAGGACCGACAAGACCTACCCCGCTGGTTTCATGGATGTTGTCTCTATCCCCAAGACTAACGAGAACTTCCGTCTTCTCTATGACACCAAGGGTCGTTTCCGTCTTCACTCCATCAGGGATGAGGAAGCTAGGTTTAAGCTTTGCAAGGTCCGAACTATCCAGTTGGGACAAAAGGGCATTCCTTACCTCAACACATACGACGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCCAACGACACCATCAAGCTCGATCTCGAGGAGAACAAGATTGTTGAGTTCATCAGGTTCGATGTCGGCAACGTTGTGATGGTTACCGGAGGAAGGAACAGAGGGCGTGTTGGTGTGATTGAGAACCGTGAGAAGCATAAGGGAAGCTTTGAGACGATCCACATCCAGGACTCGACTGGGCATGAGTTTGCGACGAGATTGGGGTAATGTGTTCACCCTTGGCAAAGGAACAAAGCCGTGGGTGTCTCTTCCCAAAGGGTAAAGGTATTAAGCTTACCATCATTGAGGAAGCCAAGAAGAGGCTTGCTGGTCAA



gi|167474482|gb|FD958984.1|FD958984 RR1G343JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
|||||||||||||||||||||
AAGAAACGAAGGGGTTACGAC

EST sequence (targeted fragment marked with yellow):
TCATCTCTAACCCTAATTTGCTCGGTATCCGATCTCGAACCGAGCACATGATCCAGGAGGACTCCCTCAACGTTCCTCCGCCTCCTGAGCCGCCCACCGATGATCCTATCGCCAAGGAGTTCGAGCCCATCGATTCCGGCAGCGAGCTCGAGGAAGACGATTTTAAGACAGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCCCTTATTACTATGCAACGTACTCATATTAGACGTTTGGTCGAGAAACGTGGAGATGACGTTGAGGCCATGTACCGAGATAGGAAGCTAAACTCGATGCAGCATTCGGTTGCAACTTTGGGGAAGCTATGCACTAGATATTTCATGTACAAGGATAAGAACCCTGTTTTAGTTCCATGCTGATGGAAAAGAAAATTATGCATCACATTTTTGTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



gi|158651348|gb|EX761239.1|EX761239 RR2CR58JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
||||| |||||| ||||| ||
AAGAACCGAAGGAGTTACTAC

EST sequence (targeted fragment marked with yellow):
GATGCAGAGGCATATCCAGGTTGACGGCAAAGTCAGGACCGACAAGACCTACCCCGCTGGTTTCATGGATGTTGTCTCTATCCCCAAGACTAACGAGAACTTCCGTCTTCTCTATGACACCAAGGGTCGTTTCCGTCTTCACTCCAGGGATGAGGAAGCTAAGTTTAAGCTTTGCAAGGTCCGAACTATCCAGTTGGGACAAAAGGGCATTCCTTACCTCAACACATACGACGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCCAACGACACCATCAAGCTCGATCTCGAGGAGAACAAGATTGTTGAGTTCATCAAGTTCAATGTCGGCAACGTTGTGATGGTTACCGGAGGAAGGAACAGAGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAGCATAAGGGAAGCTTTGAGACGATCCACATCCAGGACTCGACTGGGCATGAGTTTGCGACGAGATTGGGTAATGTGTTCACCCTTGGCAAAGGAACAAAGCCGTGGGTGTCTCTTCCCAAGGGTAAAGGTATTAAGCTTACCATCATTGAGGAAGCCAAGAAGAGGCTTGCTGGTCAACAGGCTGCTCGATTTTGTGATTTTTCCAGCTCTTTTATTATGTCCTTTTAGACGTTTTTACGTTTTCGTAGACTCGCTTTGCTTCTTTTTGTTTTGGAACTTGTGTTATTTTCTCTGTTTCAAGAATTCAACAAAAACTTCAAACAAAAAAAAAAAAAAAAAAA



gi|166111550|gb|FD540115.1|FD540115 RR2EH33TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
.|||.|||.|||||||. ||.
GAGAGACGGAGGGGTTGGGAT

EST sequence (targeted fragment marked with yellow):
GGATGGATGAGAAGAAGATATTTTGAATCGTAGATCAAAGAGGGAGGGGGAGAAGAAGAAAAATGATGCTTGCTCGTTTTGCATTTCGATCTCAACTGAGACTTTCTGTGACAGCTCGGCAAGCTGCTTCTTGCGGTTCTTACTCCTCCTCTGCATCCGCAGCCTCAGCTGAAGCTGAAAGGACGATACGTGAAGGTCCGAGAAATGACTGGAGTAAAGATGAAATCAAGTCCGTCTATGACTCTCCTGTTCTTGACCTCCTCTTCCATGGAGCTCAGGTTCATAGGCATGTTCATAACTTCAGGGAAGTACAGCAATGTACTCTCCTCTCCATAAAGACTGGAGGGTGCAGTGAGGACTGTTCTTATTGTCCTCAGTCCTCCAGATATGACACTGGAGTCAAGGCCCAGAGACTCATGTCCAAGGACGCTGTCATTGTTGCTGCTAAGAAGGCAAAAGAAGCTGGTAGCACACGCTTTTGCATGGGTGCTGCCTGGCGAGATACAATAGGACGCAAAACCAATTTCAACCAGATACTTGAGTACATCAAAGAGATAAGAGGCATGGGGATGGAAGTTTGCTGCACATTGGGCATGATTGAGAAACAACAAGCGTTAGAGCTAAAGAAGGCCGGCCTCACTGCTTATAACCATAATCTTGATACTTCGAGAGAGTACTACCCCAATGTCATCACTACAAGAAGTTATGACGAACGTCTTGAACTCTTGACATGTGCGTGAAGCTGGTATCAACGTCTGTTCAGGAGGATATAGGGTTGGGGAGGCAGAGAGGACAGAGTAG



gi|161530765|gb|EY902824.1|EY902824 RR2DN50JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
||||| |||||| ||||| ||
AAGAACCGAAGGAGTTACTAC

EST sequence (targeted fragment marked with yellow):
TCATCTCCATCTTGATGCAGAGGCATATCCAGGTTGACGGCAAAGTCAGGACCGACAAGACCTACCCCGTTGGTTTCATGGATGTTGTCTCTATCCCCAAGACTAACGAGAACTTCCGTCTTCTCTATGACACCAAGGGTCGTTTCCGTCTTCACTCCATCAGGGATGAGGAAGCAAAGTTTAAGCTTTGCAAGGTCCGAACTATCCAGTTGGGACAAAAGGGCATTCCTTACCTCAACACATACGACGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCCAACGACACCATCAAGCTCGATCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTCGATGTCGGCAACGTTGTGATGGTTACCGGAGGGAGAAACAGGGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAGCATAAGGGAAGCTTCGAGACGATCCACATCCAGGACTCGACGGGACATGAGTTTGCGACGAGGTTGGGTAATGTGTTCACCCTTGGCAAAGGAACAAAGCCGTGGGTGTCTCTTCCCAAGGGTAAAGGTATTAAGCTTACCATCATTGAGGAAGCCAAGAAGAGGCTTGCTGGTCAACAGGCTGCTTGACTTTGTTATTTTTCCAGCTCTTTGTTATGTCTTTGTAGACGTCTTTATGTTTTCGTAGACTCGCTTTGCTTCTTTTTTTTGTTTTGGAACTTGTGTTATTTTCTCTGTTTCAAGAATTCAACAAAAACTCCAAAAAAAAAAAAAAAA



gi|161517610|gb|EY897497.1|EY897497 RR1D940TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
|||||||||||||||||||||
AAGAAACGAAGGGGTTACGAC

EST sequence (targeted fragment marked with yellow):
GGGAGCTTTCTTCTTCTTCTTCATCTAAAGAGAGAGAGAAAATCTGTGAGAGGGAGAGACAGAGATGGCGAGGTCAAGGAGAAAGTACAAGAACTCGAGAGCCAAAGTACGCGTGGCTCTACCCAAGAAAAACCCAAACATCTTCAAACCAGCTTTCAACTTCCCTCCCAAGCTCCGCGCTCTCATGGCCGACGACGACGTCCCCGAGTGGGACGACCAGGCTAGCGTCATCCAGAACTACAAATCCTTCGGCGTCATCTCTAACCCTAATCTGCTCGGTATCCGATCTCGAACCGAGCACATGATCCAGGACGACTCCCTCAACGTTCCTCCGCCTCCTGAGCCGCCCACCGATGATCCTATCGCCAAGGAGTTCGAGCCCATCGATTCCGGCAGCGAGCTCGAGGAAGACGATCTTAAGACAGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCCCTTACTACTATGCAACGTACTCATATTAGACGTTTGGTCGAGAAACATGGAGATGACGTTGAGGCCATGTACCGAGACAGGAAGCTAAACTCGATGCAGCATTCGGTTGCAACTTTGCGGAAGCTATGCACTAGATATCTCATGTACAAGATAAGAACCCTGTTTTAGTTCCATGCTGATGGAAAGAAATTATGCATCACATCTTTGTTTCCTCTGCTCTCTCTCATTTTGTTTAATCTTACACAACACTGCACACTATGTTTATCAAGTTCTCTATAATCCAAAGATA



gi|166112365|gb|FD544716.1|FD544716 RR3EK70JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
|||||| |||||||||. |..
AAGAAAAGAAGGGGTTGGGGT

EST sequence (targeted fragment marked with yellow):
TTTTTTTCAGACACTCTCTCTTTTTCTCGCTCTCTTTTAACTACCAAAGTGATTATGTAACCAGAAAAAGGTGTAGTAGAAACAGAGTTATGCTGTGTCCAAGACCAAAGCCTGACCAGTCACTGCAACGAAGTTCATCGAAGAAGCAACAGTATATTAGACGGTAAAAAATGTTGGGGTTGGGGAAGAAAAGAAGGATGAGACCTTTTTTACCGTGAGGGTAATTTTCTCAAAATATCTGTCCTACTTAGGTTGTCTTTTTAGTTTCGGATCTATTGCACTCTTTTAAGAAGAAACAGCTTATGGTTAGTGGGATATTTTTTTTTTTAGTATGAGACGATGGGAAGGGTTTGTGTTTCAAATTTGTTTATTGATTCTTTTGTCACAAAAAAAAAAAAAAAAA



gi|161531004|gb|EY903027.1|EY903027 RR2DQ39JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
|||||| |||||||||. |..
AAGAAAAGAAGGGGTTGGGGT

EST sequence (targeted fragment marked with yellow):
TGCAGCAATCTATTCCGTGTATTTGGAGCCTCTAAAGGAAGTACTGAAGCGGCAACTTTGGAAGCTAGCAAAACCCGATGAGAAGGCAAATCCAGACACCTGCAAGACCTTCAAGAGCTATTAGCAGCATGACGCGTATGGTTAGACGAGGATCAGAGAGTCCAGGAGCAGAGGCGAATGGGAACGGATATGACTTCACAAATAAGTTGCTGCATATGGCTTGGCACCCAACAGAGAACTCAATTGCTTGTGCAGCAGCAAACAGCTTGTACATGTATTATGCATGAACTGGAGAGAGAGAGATGGAAGATCGCTCCTATTTAACTTTCCTTTTCTCATTTTTTTCAGACACTCTCTCTTTCTCTCGCTCTCTTTTAACTACCAAAGTGATTATGTAACCAGAAAAAGGTGTAGTAGTAACAGAGTTATGCTGTGTCCAAGACCAAAGCCTGACCAGTCGCTGCAACGAAGTTTATGGAAGAAGCAACAGTATATTAGACGGTAAAAAATGTTGGGGTTGGGGAAGAAAAGAAGAATGAGACCTTTTTTACCGTGAGGGTAATTTTCTCAAAATATCTGTCCTACTTAGGTTGTCTTTTTAGTTTCGGATCTATTGCACTCTTTTAAGAAGAAACAGCTTATGGTTAGTGGGATATTTTTTTTTAGTATGAGACGATGGGAAGGGTTTGTGTTTCAAATTTGTTTATTGATTCTTTTGGGACTCTATTCTGATTCGCCCAAAAAAAAAAAAAAAAA



gi|154171650|gb|EV542924.1|EV542924 RR2BD12JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
||||| |||||| ||||| ||
AAGAACCGAAGGAGTTACTAC

EST sequence (targeted fragment marked with yellow):
CTTGATGCAGAGGCATATCCAGGTTGACGGCAAAGTCAGGACCGACAAGACCTACCCCGCTGGTTTCATGGATGTTGTCTCTATCCCCAAGACTAACGAGAACTTCCGTCTTCTCTATGACACCAAGGGTCGTTTCCGTCTTCACTCCATCAGGGATGAGGAAGCTAGGTTTAAGCTTTGCAAGGTCCGAACTATCCAGTTGGGACAAAAGGGCATTCCTTACCTCAACACATACGACGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCCAACGACACCATCAAGCTCGATCTCGAGGAGAACAAGATTGTTGAGTTCATCAGGTTCGATGTCGGCAACGTTGTGATGGTTACCGGAGGAAGGAACAGAGGGCGTGTTGGTGTGATTGAGAACCGTGAGAAGCATAAGGGAAGCTTTGAGACGATCCACATCCAGGACTCGACTGGGCATGAGTTTGCGACGAGATTGGGTAATGTGTTCACCCTTGGCAAAGGAACAAAGCCGTGGGTGTCTCTTCCCAAGGGTAAAGGTATTAAGCTTACCATCATTGAGGAAGCCAAGAAGAGGCTTGCTGGTCAACAGGCTTGATTTTGTGATTTTTCCAGCTCTTTTATTATGTCCTTTTAGACGTTTTTACGTTTTCGTAGACTCGCTTTGCTTCTTTTTGTTTTGGAACTTGTGTTATTTTCTCTGTTTCAAGAATTCAACAAAAACTTCAAACATCACATGTTCTTT



gi|167502766|gb|FD984804.1|FD984804 RR4GT77JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
|||||||| ||| |||||| .
AAGAAACGCAGGAGTTACGCT

EST sequence (targeted fragment marked with yellow):
ACTACGCTTATTGCAGATGCAGCTTCCAAGGACGAGTTACAAGCTCGTATCTCCCAGCTGAAGAAAGAGCTATTCGAGACTGATTCTGTCTATGACTCAGAGAAGCTCGCTGAGAGAATGGCTAAACTCTCTGGTGGTGTTGCTGTCATTAAAGTCGGAGCAGCGACTGAAACTGAGCTTGAGGACCGTAAGCTTCGCATTGAGGACGCAAAGAACGCTACATTTGCTGCTATCGAAGAAGGTATAGTTCCTGGTGGTGGTGCGACTTTGGTGCATCTCTCAACTGTGATTCCTGCCATTAAAGAGAAGCTGGAGGATGCTGATGAACGTTTGGGAGCTGACATAGTACAGAAGGCTTTGGTGGCACCAGCTGCACTTATTGCTCAGAACGCTGGAATCGAAGGAGAAGTTGTGGTTGAAAAGATTATGTTCAGTGAATGGGAGATAGGGTACAACGCCATGACTGATAACTATGAGAATCTGTTGGAAGCTGGAGTGATTGATCCAGCTAAAGTCACGAGATGTGCGCTTCAGAACGCTGCATCGGTTGCAGGAATGGTACTGACAACTCAGGCCATTGTTGTTGACAAACCGAAACCTAAGGCTCCTGCTGCTGCTCCTCCTCAGGGTCTCATGGTGTAATGGGAAAATTACACACTTTTTACCATATGGTCATATTTGTTGACCCCAATGATCTCACAATGTTTTTTTTTTTTTACTTTCTCCGTTGGGGGATATGAGTAATTTTTTTAACGGCAACAACAAATAAATTCACTTTGATTAAGAAAAAAAAAAAAAAAAAAA



gi|158658705|gb|EX768596.1|EX768596 RR3CI82JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
|.||||||||| || ||||..
AGGAAACGAAGAGGGTACGGT

EST sequence (targeted fragment marked with yellow):
CAGAGAGGGAAGGTCTCAAATTAAGTGCATCAGAATCGCTTAAAGCGTGCATGGAAGAATCAAAGAAGGAGAAGAAATGCTTGAAGAAGCTTTTGGCATGGGAGAAGCAAAGGAGCAAGCTGTGGCACAAGTGGAGGAAGAACAACGCTCAAAAGAAGCAGCTGAGGCACACAACAAGAGAAAGCTGGAGACTCTCAGGTTAAAAATCGAACTAGACTTCCAACGACACAAAGACGATCACCAAAGGCTTGAGCAATAGCTCTCTCGGCTCAAAGCCTCTTCAGATACCGACTCAAGCCACTTATCCAACAATGTTTGGGAACCTGCAAAATCTCAAGGAGAAAACATCGCTAAGCTGCTTGAAGAACTCGATAAGCTTGAAGGGTCTTATGAGAGTGAAGCAAACAGTGATAGAGAATGCATAGTCTGTATGAAAGATGAAGTCTCGGTGGTGTTTCTTCCGTGTGCGCATCAAGTTGCGTGCGGTAGTTGCAGCGATAATTTCTTCTCGAGCAATAACAGTGGCGGAGGCAAAGTCACCTGTCCTTGCTGCAGAGCTGTGGTTCAGCAGCGCATTCATATCTTTGGAGCAACGTCGTGAAAACTGAGATAGCTTTTCTCTTTGGGATTCAAAGAGAGCATCACAACTTCAGGTTTTACTTTGCAAGTACAAGAAAAATAAATGCTTAGCTTCTTCGGCAAAGCTTTTTATACTTGGAATTTTATTTTATTTGGAAAAAGGTTTTGCACGATGTACAAAAAAATTGCGATCGTGATGGAAACTTTTTTTTCCCCAAAAAAAAAAAAAAAAAAA



gi|161544926|gb|EY916662.1|EY916662 RR3E881TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
||||| |||||| ||||| ||
AAGAACCGAAGGAGTTACTAC

EST sequence (targeted fragment marked with yellow):
GAAGAACCGTGAGAAGCATAAGGGAAGCTTCGAGACGATCCACATCCAGGACTCGACGGGACATGAGTTTGCGACGAGGTTGGGCAATGTGTTCACCCTTGGCAAAGGAACAAAGCCGTGGGTGTCTCTTCCCAAGGGTAAAGGTATTAAGCTTACCATCATTGAGGAAGCCAAGAAGAGGCTTGCTGGTCAACAAGCTGCTTGATTTTGTGATTTTTCCAGCTCTTTGTTATGTCTTTGTAGACGTCTTTATGTTTTCGTAGACTCGCTTTGCTTCTTTTTTGTTTTGGAACTTGATTTTGTTATTTTCTCTGTTTCAAGAATTCAACAAAAACTTCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAA



gi|161531639|gb|EY903662.1|EY903662 RR2E023JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTCTTTGCTTCCCCAATGCTG
||||| |||||| ||||| ||
AAGAACCGAAGGAGTTACTAC

EST sequence (targeted fragment marked with yellow):
TTCCCAAGGGTAAAGGTATTAAGCTTACCATCATTGAGGAAGCCAAGAAGAGGCTTGCTGGTCAACAGGCTGCTTGATTTCGTGATTTTTCCAGCTCTTTTATTATGTCCTTTTAGACGTTTTTACGTTTTCGTAGACTCGCTTTGCTTCTTTTTGTTTTGGAACTTGTGTTATTTTCTCTGTTTCAAGAATTCAACAAAAACTTCAAACATCACATGTTCTTTAGTTTTGTTTTGTTTTCATTGAAGTTTTAGTTTCTTGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA