miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTGAGAGAGATAACACAGAC
species: Raphanus raphanistrum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|167498023|gb|FD980678.1|FD980678 RR3GR56TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||.|||||||| |||||
AAACTTTCTCTATT-TGTCTA

EST sequence (targeted fragment marked with yellow):
GGGCCGCACACTTTTAACTTGTCCTTTTCCTCAATCCCCAAATCGTCGAAGATAGATTCAGATCGGAAACGGAAGAAAGACTCTGTCTCTTCGACAGATCAACCAAAGGACAAGAGAGCCGATCACCACCACCACCACCACCACCACCACCAAAGCAAGCACCGTAAGAAGAGCAAGATGGCGTCGAGAGACCAAGTGAAGGCGTCGCACATTCTGATCAAGCATCAAGGATCTCGCAGGAAGGCGTCGTGGAAGGATCCGGAAGGTAAGGTCATCATGACTACCACCAGAGAAGCAGCCGTCGAACAGCTTAAATCGATCCGTGAAGACATCCTCTCTGGCAAAGCCAACTTCGAGGATGTCGCCACTCGTGTTTCCGACTGTAGCTCTGCTAAACGCGGCGGCGATCTAGGTCCATTTGGGCGAGGTCAAATGCAGAAACCGTTTGAGGAAGCAACATACGCACTGAAGGTGGGAGATATAAGCGAGATTGTGGACACAGACGGTGGAGTCCATATCATAAAGAGAACAGCTTGATCTGTTTATCTCTTTCAAAGCCTCCTCCTATCATGTACCAAAAGTTACCAGCTTTTTGATTTACCTTTTCTTCTTTGACCAAAGATAGAAGATTGAATAATAAGCTAAAAAGCTTTGCTATCGTGGCTTTGGTTCTGCATCTTTATATGGATTTGATACAACCAAACATATGATAAAGACAGAAACTGTATC



gi|158654012|gb|EX763903.1|EX763903 RR3C927TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||.||||||| || | ||||
AAATTCTCTCTTTTCTCTCTG

EST sequence (targeted fragment marked with yellow):
GGAAGAATGTTAGGCAACTTATCCATCTCTCTCAACCTACGTCGTCTCTCTTTTCTCTCTTAAAAAAAATGGAGATTTCAGTGGCATCGGCGACTGTTTCAATAGCTCTTGCTGTTGTGTCGTGGTGGGTATGGAGAACTTTAAACTGGGTTTGGTTTAAACCAAAGATGCTCGAGAGTTACCTCAGAAGACAAGGTCTTTCCGGTAGTCCTTACACGCTTCTCGTCGGAGATTTGAAGAAGGCTTTCAGCATGTTGACGGAGGCAAGATCCAAACCCATCAAACTAACCGATGATATCACTCCACGTCTTGTGCCTTATCCCTTAAAAATGCTCAAGACTCACGGAAGGACTTACTTTACATGGCTAGGACCTATACCAACCATCACCATAATGGACCCTGAGAAAATCAAGGAAGTGTTCAACAAAGTTTATGATTTCCAGAAGCCACATACCTTCCCTTTGGCCAGGTTGATGGGCACTGGACTTGCTAACTATGATGGTGATAAATGGGCTAAACACCGACGAATCATCAACCCTGCTTTCCACCTTGAGAAGATCAAGAACATGGTACCTGCGTTTCACCAGAGCTGCAGAGAGGTCGTTGGAGAATGGGACAAGTTGGTCTCGGAGAAAGAGGGGCTGTCCTGTGAAGTGGACGTGTGGCCAGGGCTTGTGAGTATGACTGCTGATGTGATCTCTCGTACTGCTTTTGGTAGCAGCTACAAGAAGGCAGAGGATATTTGAGCTCCAGCTGACTAGCACAGCTCATCATTCAGCTTTAGAAACACTCATCCCTGGATATAGTATCTTCACGA



gi|166114304|gb|FD548994.1|FD548994 RR3EQ15TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
GCAAGATTGCAGCAGCTCAAGGGCTCTACGCCATGGTTCTACCAGGATTCTGGATGGACATTGGACAGCCCAAGGACTACATAACGGGCCTGATACTCTACTTAGACTCTCTGAGGAAGAAATCTCCTGCCAAGCTAACCACTGGTGCACACATCGTTGGGAATGTTCTGGTGGATGAAACCGCTAAGATTGGGGAAGGGTGTTTGATAGGACCAGATGTGGCCATTGGTCCAGGATGCGTTGTTGAGTCAGGGGTGAGGCTTTCACGGTGCACGGTCATGCGTGGGGCAAGGATTAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTTATGTGGGATCTTCTTTTTTTGTTTTTTGTGTATTTTATCTCTCTCAAACTTTTTGCTTTCTGTTATTCTTC



gi|166101014|gb|FD530335.1|FD530335 RR1F666JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||.|| ||| ||
AAACTCTCTCTGTT-TGTGTG

EST sequence (targeted fragment marked with yellow):
AAGGAGCCACGCTTGAATGGGTGAGGAAGCTGCACAAGGAGATGAAAGTAGAGGAGCTTGTGGACCGAGAGCTTGGGACAACGTACGATAAGATAGAAGTTGGAGAGATGCTGCAAGTGGCTTTGCTATGCACTCAGTTCCTTCCAGCGCACAGACCGAAAATGTCTGAAGTGGTTCAGATGCTTGAAGGAGATGGCTTAGCTGAGAGATGGGCTGCCTCACATAACCATTCACATTTCTACCATGCCAACATGTCTTACAGAAGTATTACCTCTACTGATGCTAATGGAGACAACCAAACCAAACATCTGTTTGGATCCTCAGGGTTTGATGATGAAGATGATAATCATGCATTAGATTCTTTTGCCATGGAACTATTTGGTCCAAGGTAGAGAAAGAAAGAAAGATCATATCCCTCATGAGTTCAATTTTTTTTTTTTTTGGAGATGATATAGACATGTAAATTTTATGGAAATTTGAGATTATGTGGTCTAATGTTTACTATTTTGGATGTATATATTATTTATTTTGGAAGGTGTTTTTCTCTGTGTGTTTGTCTCTCTCAAAATCATTAAGACTTTATTTTGAGAATGTTTGTTATCAGTCACACATGTCTTTGAAGCGCTTGTTGTGGTCCAGGGAAAGCAATGTTTGGTCAAACTGTGACCTCTATGTGTTATATCTGCACATCAGTTTTAATGATTTTCTGACAAAAAAAAAAAAAAA



gi|158650790|gb|EX760681.1|EX760681 RR2CI95JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
GTTCTCGACAAGATTGAGCTAAGACCAACATCAATCGAGAAAGAGACCTTCCCCAAGATTGCAGCAGCTCAAGGGCTCTACGCCATGGTGCTACCTGGATTCTGGATGGACATTGGACAACCCAAGGACTACATAACGGGCCTGAGACTCTACTTAGACTCTCTGAGGAAGAAGTCTCCTGCCAAGCTAACCACTGGTGCACACATCGTTGGGAACGTTCTGGTGGATGAAACCGCTAAGATTGGGGAAGGGTGTTTGATAGGACCTGACGTGGCCATTGGTCCAGGATGCGTTGTTGAGTCAGGGGTGAGGCTTTCACGGTGCACGGTCATGCGTGGGGCAAGGATCAAGAAGCATGCGTGTATCTCGAGCAGTATCGTGGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTTATGTGGGATCTTCTTTTTTGTTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTGCTTTCTGTTATTCTTCTTTGTCTTTGAATAAAAGTATAAACAAAATGATGTATATCTATCTTGTTAGTCATTTGGTGTTTGTCTCTATTTTTTGTAACTTATCAAAACATTTCTCAATTGAATATTATTTTTTTCCCTAAAAAAAAAAAAAAAAAAAAAA



gi|166126856|gb|FD558886.1|FD558886 RR4FD29TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||.|| |||.|
AAGCTCTCTCTGTTTTGTTTT

EST sequence (targeted fragment marked with yellow):
TTTTTGTTTTGTCTCTCTCGAATTAATAGAAATGGAGCCGAAGCAGATCAAAGCTATGTTCTTTATCTTAACAATGATTATGGCTTTGGTTTGTCATCATCAATCAGAAGCTATACCATATATTGGTCGACTGAAATGCATTGTATCACTAAGGAGCGTTGAGGGTTGTCTGGAGGCCATAGAGAAAGCTACAAAGGGAGACGATCGTGGTTTGGATAAGGAATGCTGCGACGCCATTCGTGGCCTCGCCAATGACTGTTTGCCGATTATCTTCTCCGGAGGACCCGCCATTGGCTTAGTCGTTCAAGCTGCTTGTTCCCGTATATTAGATGACGTTAATTAATTATAGAACATAATTATAATTAAAAAAAGAGCTGGGTCACTATACAATTGTATCATGCATGGTTTTTTTTTTTAAAAGGGGAAAAGGGAGACAGATATACAAACGTCAATAAACTTGTAACGACCCGAATTCTGGTTTCGAAAATTTTTAGCCGGCTAAGTCTCAAGCATTTACGAAAACCCAATTGTTTGCCTAT



gi|166114221|gb|FD545101.1|FD545101 RR3EQ15JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
GGTGCACACATCGTTGGGAATGTTCTGGTGGATGAAACCGCTAAGATTGGGGAAGGGTGTTTGATAGGACCAGATGTGGCCATTGGTCCAGGATGCGTTGTTGAGTCAGGGGTGAGGCTTTCACGGTGCACGGTCATGCGTGGGGCAAGGATTAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTTATGTGGGATCTTCTTTTTTTGTTTTTTGTGTATTTTATCTCTCTCAAACTTTTTGCTTTCTGTTATTTTTCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGTATATTTATCTTGTTAGTCATTTGGTGTTTGTCTTTATTTTTTTGTAACTTATCAAAACATTTCTCAATTGAATATTATTATTTTTTTCCGAAAAAAAAAAAAAAAAAAAAAA



gi|167494713|gb|FD976312.1|FD976312 RR3GO30JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
AAGATTGAGCTAAGACCAACATCGATCGAGAAAGAGACCTTCCCCAAGATTGCAGCAGCTCAAGGGTTCTGCCATGGTGCTACCTGGATTCTGGATGGACATTGGACAACCCAAGGACTACATAACGGGCCTGAGACTCTACTTAGACTCTCTCAGGAAGAAGTCTCCAGCCAAGCTAACCACCGGTGCACACATTGTTGGGAACGTTCTGGTGGATGAAACCGCTAAGATTGGAGAAGGGTGTTTGATAGGACCAGACGTGGCCATTGGTCCGGGCTGCGTTGTTGAGTCAGGGGTGAGGCTTTCACGGTGCACGGTCATGCGTGGGGCAAGGATCAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTTATGTGGGATCTTCTTTTTTGTTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTGCTTCTGTTATTCTTCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGTATATCTTATCTTGTTTAGTCATTTGGTGTTTGTCTCTATTTTTTGTTAACTTATCAAAACATTTCTCAAAAAAAAAAAAAAAAAAA



gi|167494914|gb|FD975943.1|FD975943 RR3GI80JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.||.|.||||| |||| ||||
GAATTTTCTCTCTTGTATCTG

EST sequence (targeted fragment marked with yellow):
GTGGAAGCAGACCCTCGCGTCTGTCAAGGAGCAGGTCTCGAAGATTCAGAGCGTGTCGTCGGAGGCGTACAATGTGAACTCCCAAAAGGCGATGACTATTTTGAAAGATACTTCCGAGCAGCTTAGGATTCAAGCGGAGAAGGCCAAGGAAGAGTTGGGAACGAAGGCTAAAGAGGTTGGGGAGGAAGGGAGAGAGTATATTTTGAAAGCAGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTTCCACTGAGGATCTGAGGGATGTGTTTCGGACTCAAGATTTTCATGTTGGGATCCCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGATATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCCCTTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCATCTGCTAAGTTCTTAAAAGGACAGATGGCCATAGTGGCAATCATATTTTTGAGAGAGTTGAAGCTGGTACTATTTCAGAGATCTACGTTCATGGGGTTTTTGACCACCCTTACTAGTGGTGGTGTGTTGGCGTTTTACGGGTACAAGTTGATGAGCAACAAAGAAAAGGGACCAAACGAAAAACAAGCTGGAGAAGGAGATGAAACAGGCGAAGGGTTTGTATAAGAGAAGGATAGAGAGAAATGGTAACATGAGCATCATACGCTGTTTTAGTGATATCCGAAGTCTATGTTCTCTCTTTTAAGTTGTGTACAACTTTTGTGATCAATCATTTTC



gi|161538791|gb|EY911432.1|EY911432 RR3DW38JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
CTCGACAAGATCGAGCTAAGACCAACATCAACCGAGAAAGAGACCTTCCCCAAGATTGCAGCAGCTCAAGGGCTCTACGCCATGGTGCTACCAGGATTCTGGATGGACATTGGGCAACCCAAGGACTACATAACGGGCCTGAGACTCTACTTAGACTCTCTGAGTAAGAAGTCTCCTGCCAAGCTAACCACTGGTGCACACATCGTTGGGAACGTTCTGGTGGATGAAACCGCTAAGATTGGGGAAGGGTGTTTGATAGGACCAGACGTGGCCATTGGTCCAGGATGCGTTGTTGAGTCAGGGGTGAGGCTTTCACGGTGCACGGTCATGCGTGGGGCAAGGATCAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTTATGTGGGATCTTCTTTTTTGTTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTGCTTTCTGTTATTCTTCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGTATATCTATCTTGTTAGTCATTTGGTGTTTGTCTCTATTTTTCTGTAACTTATTAAAACAATTCTCAATTGAATATTAAAAAAAAAAAAAAAAAAAAA



gi|166119021|gb|FD550891.1|FD550891 RR3FD54TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||.|| |||.|
AAGCTCTCTCTGTTTTGTTTT

EST sequence (targeted fragment marked with yellow):
TTTTTGTTTTGTCTCTCTCGAATTAATAGAAATGGAGCCGAAGCAGATCAAAGCTATGTTCTTTTTCTTAACAATGATTATGGCTTTGGTTTGTCATCATCAATCAGAAGCTATGCCATATATTGGTCGACTGAAATGCATTATATCACTAAGGAGCGTTGAGGGTTGTCTGGAGGCCATAGAGAAAGCTACAAAGGGAGACAATCGTGGTTTGGATAAGGAATGCTGCGACGCCATTCGTGGCCTCGCCAATGACTGTTTGCCGATTATCTTCTCCGGAGGACCCGCCATTGGCTTAGTCGTTCAAGCTGCTTGTTCCCGTATATCAGATGACGTTAATTAATTATAGTTCATAAGAGCCAGGTCACTAATACAATTGTATCATGCATGGCTTTTTTAAAAAAAAGAAGGGGGAAAAGAGACAGATATGTCAAACGTCAATAAACTGCTATATAAAAGAAAAAAAAAAAAAAAA



gi|154260816|gb|EV571805.1|EV571805 RR4AE65JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
GGTTCTCGACAAGATTGAGCTAAGACCAACATCGATCGAGAAAGAGACCTTCCCCAAGATTGCAGCAGCTCAAGGGCTTTACGCCATGGTGCTACCTGGATTCTGGATGGACATTGGACAACCCAAGGACTACATAACGGTCCTGAGACTCTACTTAGACTCTCTGAGGAAGAAATCTCCTGCCAAGCTGACCACTGGTGCACACATCGTTGGGAATGTTCTGGTCGATGAAACCGCTAAGATTGGGGAAGGGTGTTTGATAGGACCAGACGTGGCCATTGGTCCGGGATGCGTTGTTGAGTCAGGGGTGAGGCTTTCGCGATGCACGGTCATGCGTGAGGCAAGGATTAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTATGTGGGATCTTCTTTTTTGTTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTTGCTTCTGTTATTCTTCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGT



gi|154173188|gb|EV544461.1|EV544461 RR3AE71JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.||.|.||||| |||| ||||
GAATTTTCTCTCTTGTATCTG

EST sequence (targeted fragment marked with yellow):
GGCGGAGAAGGCCAAGGAAGAGTTGGGTACTAAGGCTAAAGAGGTTGGGGAGGAAGGGAGAGAGTATATTTTGAAAGCAGCGGAGGAGTCACCTTCTGATGTGAAGGAGATTGTTGAAGCTTTCTCTTCCACTGAGGATCTGAGGGATGTGTCTCGGACTCAAGATTTTCATGTTGGGATACCTTATGGTCTGCTTCTGTTTGTGGGTGGTTTCCTTTCCTTTATGATATCGGGGAGCATTCCTGCCATTAGGTTTGGGGTCATTCTTGGTGGAGCTTTTTTTGCACTGAGCATGGCTAGTCTTAAGGCTCAGAGGATTGGAGAGTCATCTGCTAAGTTCTTAAAAGGACAGATGGCCATAGTGGCAATCATATTTTTGAGAGAGTTGAAGTTGGTACTATTTCAGAGATCTACGTTCGTGGGGTTTTTGACCACCCTTACTAGTGGCGGTGTGTTGGCGTTTTACGGGTACAAGTTGATGAGCAACAAAGAAAAGGGACCAAACGAAAAACCAGCTGGAGAAGGAGATGAAACAGGCGAAGGGTTTGTAAGAAGAGAAGGATAGAGAAATGGTAACATGAGCATCATACTCTGTTTTAGTGATATCCGAAGTCTATGTTCTCTCTTTTAAGTTGTGTACAACTTTTGTGATCAATCATTTTCTAAACTTCTGTGTACTTATCTGTATTTGGATTTTGTGGAGTCCTTTTACCACATATCAACAAACAATAAACAGGTCAGAATCATCTGGAGATGCCACT



gi|154255696|gb|EV566747.1|EV566747 RR4AE65TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
GAGGCTTTCGCGATGCACGGTCATGCGTGAGGCAAGGATTAAGAAGCATGCGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTATGTGGGATCTTCTTTTTTGTTTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTTGCTTCTGTTATTCTTCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGT



gi|154261013|gb|EV571984.1|EV571984 RR4AH11JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
.|||| ||||| |||||||||
GAACTATCTCT-TTGTGTCTG

EST sequence (targeted fragment marked with yellow):
TGGCTCCGCTTCTCTTCTGATCTCTCCCCCTCTCGGCATTCTGTCGGGCTCTCCGTGTCGGAAGTGGCCACTCTCTTACCGGAGCAGCCTTTTGCGTTTCAATGTCCAACAGCTTCATTGACTCTGAAGTCTGTGTTTCTCTATCAAGTAAACGGTCTTACGGTTCTCGATAGTCGGATTTGTTGAGACGATTCTCGGGAGTCATTGATTGTCTCGGGTCATCGAATTGTTTTAGCTCACATCCGAGTGTCGTTATGGTTCGTTTGTTCTTTGCGGCAGTGGGCTTGACTTTACTTGCAGGTGAAAGAGGCTTTCTGACAGTGTGTGGCGATGACATCAATCCGATTTCTTGCTTGGTTCTTGGCGGCAGTGGAGGTGGTCGTCTCTTGGTAAGAGTTTTTCATCTCTATGCTCGTCTAGCACTTCATCGACAGTGACGGTTACAAGTTAGAGGAGTTCATCGGGAGCCAGCTACTCCGGAGACGACACGGGAGTTCCCGGCATCCAAGGCGACGAGGAGAACCTCACGGTCCTGTGGTCATCGTCGATGGTTGAGAACGGCAATCGATTCCTGAGGATTTTAAAAATGACCTAGCGGAATGTGCCGGGTCTAGTGGGTGGGCGAAGCTACGTTGTAATACATTGACTTAGGAGCTTTTGTTCGAATCGATCTTGTAACCGGTTCTGAATTTCCCGTCTAACGGGTTGAATAAAATCTTAACTC



gi|167497599|gb|FD979324.1|FD979324 RR3GA96TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence

TTTGAGAGAGATAACACAGAC
||.||||||||.|| |||.|
AAGCTCTCTCTGTTTTGTTTT

EST sequence (targeted fragment marked with yellow):
GGAAGATCTAAAAGAAACCATATTGTTATTTTGTTTTTGTTTTGTCTCTCTCGAATTAATAGAAATGGAGCCGAAGCAGATCAAAGCTATGTTCTTTTTCTTAACAATGATTATGGCTTTGGT



gi|158667755|gb|EX777646.1|EX777646 RR4CX31JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence

TTTGAGAGAGATAACACAGAC
|||||||||||||| | | ||
AAACTCTCTCTATTTTATGTG

EST sequence (targeted fragment marked with yellow):
ACCCATCGTTCTCGACAAAGATTGAGCTAAGACCAACATCGATCGAGAAAGAGACTTCCCCAAGATTGCAGCAGCTCAAGGGCTCTACGCCATGGTGCTACCTGGATTCTGGATGGACATTGGACAACCCAAGGACTACATAACGGGCCTGAGACTCTACTTAGACTCTCTGGGGAAGAAATCTCCTGCCAAGCTGACCACTGGTGCACACATCGTTGGGAATGTTCTGGTCGATGAAACCGCTAAGATTGGGGAAGGGTGTTTGATAGGACCAGACGTGGCCATTGGTCCGGGATGCGTTGTTGAGTCAGGGGTGAGGCTTTCGCGGTGCACGGTCATGCGTGGGGCAAGGATTAAGAAGCATGTGTGTGTCTCGAGCAGTATCGTAGGGTGGCACTCAACGGTTGGGCAGTGGGCTAGGATTGAGAACATGACGATCTTGGGGGAAGATGTTCATGTTGGGGATGAGATATACACCAATGGAGGGGTTGTTTTGCCACACAAGGAGATCAAATCCAACATCTTGAAGCCAGAGATAGTTATGTGATTATCTATGTGGGATCTTCTTTTTGTTTTTTTGTGTATTTTATCTCTCTCAAACTTTGTTGCTTCTGTTATTCTTCTTTGGCTTTGAATAAAAGTATAAACAAAATGATGCAAAAAAAAAAAAAAAAA