miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGACAGAAGAGAGTGAGCACA
species: Raphanus raphanistrum subsp. landra
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|166126087|gb|FD556392.1|FD556392 RR4EK70TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGG

EST sequence (targeted fragment marked with yellow):
GTTATATTATATAAATTTAGCTACAATTAATTTAGTTATAAGATTAGTAGTTTGGAGTTCACAACAATCACATTAATGGAGAGTTTGGAGATGCTTTTGTCATTCTGTATATGCAGATGGGAAGCAACAGATGGATTTTGTGTGGAACAGATTTGCACTCCTCCATCCAAGAAGTGAAGAAAAGTTTCTATGGCCAAATCCAAAGCCTGTACCATCAAGAGGGTTATTGCAGGAACCTGCAAAGACCGAGATGCCCAATAAGCTATTCACCGAGCAATGTGGATTTGGATTGTTGGACCCCAAAACGAAAGCCACGAGAGCTGAGTTATTCAGTAAAGATTTTTTAGAAAAGGTCACAATCTCTTCACACATGGGTACTTCTCAAGATCTTGATGGTGCTCTCTCTCTTCTGTCAAATTCAACACCATTCCACAAGCAACCTCCAACCTGTGGTTCACGGGTCTGTGAATCAACTCAATTCAGTCTCCAGCTATTGCAGCCGGATCCACCAGCTGTTGAGGGCTCAACCGCGTTGCCCAGGAACGGGGAAGGCCAGTATAATGAGAACTACAGCTTGAATCAGTTTTATAACTGAAAGTGTATTGCCTTAAATCATAATAAGATATTTTGTGTGAGGATCAGGCGAGCCTAGTAGTAACGTTAAGATAGGAGCTGTGAAACTTGTTTTCTGTGGAACTTGCTAATCAATTCCCTTTTTTTGTGTCAGCAATAATA


gi|154261787|gb|EV572758.1|EV572758 RR4AR67JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||| ||
ACTGTCTTCTCTCTCTCGCGT

EST sequence (targeted fragment marked with yellow):
CTGGTTGATGGATGTGATTCTGATTTTAGTAACTGTAGAGAGTATCATAAAAGACATAAGGTCTGTGATGTACATTCAAAAACTCCTGTGGTTACAATCAATGGCCATAAACAGAGGTTTTGTCAACAATGCAGCAGGTTTCATGCTTTGGAAGAGTTTGATGAAGAAAAGAAAAGTTGTAGGAAACGTCTTGATGGACACAACAGAAGAAGACGGAAGCCCCAGCCCGACCATATCGGTCGTTCTGCAACTTTCTTCCAAGGTAGCAAATTGCTGGATTTTTCTAGCTCTCCACATGTGTTTCCAACTACAAAATCTGTTGCGAGTCCGAGCTGGGGAAACGGTCTTGTAAGCGTAGCAATGGCGAACGGTTCAAGTTACGGGCAGAACCAGAGCTATGCTGGTTCTTGTCCCGCAAAGACAGGCATTACGTTCCCAATATCTTCTTCTCCAAACAACAGAGGGAAACAGTTTCCTTTCTTGCACGAAGAAGAAGACTGCTCGAGAATGACGAGTTGCATCCATGACTCTGATTGCGCTCTCTCTCTTCTGTCATCATCTTCCTCTCATTTGCTTCAGCCACCACTTTCTTTGTCCCAAGAGACGGGTTTTTATGGGTCCGGATTGTTTGAGAACGCGAGTGCAGTCTCTGATGGATCTGGTAATGAGGCTGTGGCTCTTCCACAGACGTTCCCGTTTCACTGGGAGTAGTAGTAGTAGTAGGCAGAGAGAATCAGCAAGATGCATGTCTGCTGTCTCTTTCTATATCCTCTTCTCTTTCTCTCTAGTTTTCCAAAGTTTTGTAATTTATAAGCAGTACGCTGTTGCAGCC


gi|166120951|gb|FD554132.1|FD554132 RR4F543JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||.|||||| .| ||
ACTGTCTTTTCTCACGTGAGT

EST sequence (targeted fragment marked with yellow):
GCTGCCAAGGATACTGCTATTAACGAGGATGACACTGAAACCGTGGCAATGATCAAGGAACTTTTGGAAACACGCATCAGACCAGCAGTCCAAGATGATGGTGGGGACATTGAGTATTGTGGGTTTGATCCTGAAAGCGGAATAGTGAAGCTGAGGATGCAAGGAGCTTGTAGCGATTGTCCAAGCTCATCTCTTACATTAAAATCTGGAATAGAAAACATGCTCATGCATTATGTACCCGAGGTGAAAGGTGTAGAACAAGAGTTCGATGGGGAAGAAGAGGAGGGAACGTTGTCTGGAGAGGTGAGAGAGTAGAGTAAGACGTCTCCTCAAGCTTCTCTCTCCTCTTTTCCTCAATTAGTGTACAGAAGAATAAATTCCAGTGAGTGAGTGAGTGAGTGCACTCTTTTCTGTCACTCTTTGAGTTGATTTGTTGGTGTTTTGGGGCTTTTGAATTACAGTCAAGAATGTTCTGAGAGATCAATAGTTGATCTGGTTTGTAACATTTGTTAACCTACATGAATAAGTTTTTTGAATGGTTTCTTGCAAGCAAAAAAAAAAAAAAAAAA


gi|154261484|gb|EV572455.1|EV572455 RR4AN42JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| .|||||
ACTGTCTTCTCTCTTTCGTGC

EST sequence (targeted fragment marked with yellow):
ACTTGGAAAGCCGACATACTCTGGTAGAGACAGTAACGACGCTTCAGCCGGTTCTACCAAGCTGTTGGCTCCTTGTCGAAAGAAATCAAAATCGTGTGGTCAGAGCAGCAGCATGCAAGTCCCTCGTTGCCAAGTTGATGGATGTGAACTTGATCTCTCATCTGCTAAGGATTATCACCGAAAGCATAGAGTCTGCGAAACCCATTCAAAGTGCCCCAAAGTTACTGTGAGTGGCGTGGAACGTCGGTTCTGCCAACAGTGTAGCAGGTTGCATGCCGTCTCTGAGTTTGGTGGGAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCTAGGCGTCGCAAGTCACAAGGAGTTTTTCCATTGAATCCAGAGAGGGTCGTGTATGATCAAAAGTTTGCATGGGGTACCACTTATGATACAAAGCCTACACAGATGGAAACTGGCTTTACCCTGAGCTTCCAGAGAGGCAATGGCTCTGAGGAGGAGCAGTTGTTTGCTAGTACTAATCACCCTTTATCTGCGTATCAAACCTCAGGTGGGTACTCAGCAGGGAAGAACAAGTTTCATCTTGATGTGGGAGAATACTCAGGAGTCCTCCATCAATCTCACCGTGCTTTCTCTCTTCTGTCAACTTCTTCTGGTCCCCTGGTTCACCCACATGCACAGCCACTGTCTTTACTTTTTTCATTTGATGGTTTACCAAAATAGGTGAGTAAGTAATGTGATGTCTGTAAAATCAGTTAGCTTCAGTTAGTGGATACTAATCCAAACCTATCAGCACAGCTGCCTCCTTCATTTGTATGCCGACTTTGGCTGCTTTGTTATCTTTATCCTTGTTTTGTTACTAACTAGTAAACAATGTTAATTGTTAAC


gi|167503642|gb|FD988302.1|FD988302 RR4GL47TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||.|||.|.|| | |
ACTGTCTTTTCTTATTCTTAT

EST sequence (targeted fragment marked with yellow):
GCAACTTATTGTTAAAGCTTACACAACAAAAGCTGGAAATGCTGACGCTGAGGGAAATATTGTGATCGATCCTAATCAATATAATAAAGAAGATCTCCGAATCGATTACAGCAATGCCAAGTTTTTTGTGATTAAATCTTATAGTGAAGATGATGTTCACAAGAGCATCAAATACAGTGTCTGGTCATCTACTTTGCACGGGAACAAGAAGTTGCAGAGTGCATATGAAGACGCTCAGAGAACAGCCGCCGAGAAGTCTTGTGAATGCCCAATATTCTTATTCTTTTCTGTCAATGCTAGTGGTTTGTTTTGCGGCATGGCTGAGATGACCGGTCCGGTTTCTTTTGACAAAGACATGGATTTTTGGCAGCAAGACAAATGGAGTGGAAGCTTTCCTGTCAAATGGCACATTATTAAAGACGTTCCCAATAGCTATTTCAGGCACATCATATTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGATAATGCTGAAACAAGGTCTGGAGGTGCTAAAGATATTCAAAGGCCATGCTGAAAAGACTTCGTTACTAGATGATTTTGCTTATTACGAAAACCGCCAGAGAGTCATGCACGATGAGAGAAACAGACTGCCCTACAGAAGCTTCCTTAGCCCTGTATCAGTACCCAGACCAGATTTCTCTGACAGAAACAAGAAAAGCTCTATGGATGCCTTCAAGATACCTTCAGTAACCTCTTCTTCAGAAACCA


gi|158665828|gb|EX775719.1|EX775719 RR4C646JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
|||||||||||||..|||| |
ACTGTCTTCTCTCGTTCGTTT

EST sequence (targeted fragment marked with yellow):
GATGCATTTGAAGAAGAAGACAACAGAGGAGAACAGGAACAAGAAGAGGCTATAGAGAAGAAGCAGAAAGGCAGAGCTACAAGTAGTAGCACTAGTAGTGGAGTTTCTTGTCAGGTCGAGCGATGCACTGCGGATATGAGCAGAGCCAAACAGTACCACAAACGACACAAAGTTTGCGAGTTTCATGCCAAAGCTCCTGCTGTTCGGATCTCTGGTGGTTACCAACGCTTCTGCCAACAATGTAGCAGGTTTCACGAGCTGCGTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAATGAGAGAAGGCGGAAGAGCACAAATGAATAAAACGGCCGTGATTTTGAATGTTAATGAAACAGGCTTTGCTTGCTCTCTTCTGTCACTCTCTTTAATTAAGCTCCTTGTAATCTTATGTGCCTCTCTCTCTCTGTTTCTCAATAATGTATGCAATCAAAAGCTATCTGCTAAACCTAAGACATTAATAAATGCATTGAGACCAAGTAAATGCTTGAAGGCGGAAAAAAAAAAAAAAAAAA


gi|158661644|gb|EX771535.1|EX771535 RR4C444TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
ATAAGCTTCTCATCTCCAGAGGTTATGGACACTAAACCAGAGAGCTACAGGGGGATTGGCAGCAACTCAAACTGTGCTCTCTCTCTTCTGTCAAACCCACACCAGCCACATGACAACACCAACGACAACAACACATGGAGAACTTCTTCAGGTTTTGGTCCGATGACGGTTACAATGGCTCAGCCACCACCTGCACCTAGCCAGCATCAGTATCTGAACCCGCCTTGGGTGTTTAAGGACGATGACAATAACTGTCAGAATGATATGTCTCCTGTTTGAATTTGGGGCGATTCACCGAGACAGAGATGGGCGGTGGAACGACAATGGGTGGGTTCGAGTTATCTGACCATCAACATCAGAATAGGAGGCAGTACATGGAAGGTGAGAACTCAAGGGCTTATGACTCTTCTTCACACCATCACAACTGGTCTCTCTGAGTCTCTTTGCATCAGACAATCATATTCTTGTTATATTTCTCTTTTTTTTTCTGTTATTTGCTTTACTCATGAACCAAAAAAATTGTTTCCATACATTGGCTTTTGTTTATTTATGCTTCTTGTTTGT


gi|167500822|gb|FD985725.1|FD985725 RR4H633JQB RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| |||||||
ACTGTCTTCTCTCTCTCGTGT

EST sequence (targeted fragment marked with yellow):
CCACCACCGTCCAAGTAGACTCGTGAGTTTCAAAGATGAACCTAAACAAGAGTCTGGTGTATCTTATATTTGGGACTTGCAAGAGGCCGTGCCGCCGCCGCCCCGCTCTACTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCCCAACAACATTTCTCTGAAACTAATCCAAACAAAAGTTTCTCAATCACTCAACCAAACCAAAGTTTTAACCACTCTACAGTAGACTACTATCATCAGATGCAACCGTTGAGGATCGATCCTGGCAAGAAGACCAAATCTGTTACTAGTTCTAGTTCATGTAATGGAAACGGATCATCCACGGTTGATCTAGTGCAACTGTCATCGCATCTTCAGAATCCAGCAACAACAGAGGACTTTCACTGATGAGGTGAAGCAGGAATATAATGAGTTTTATTTCCCCTCCTAGCTCCTAATATAATGTTTCTTCAAAGTGTTTTTTTGCACAAGGAGCTAAGGCTGCTTGGTTTGGTTTGATTAGTTTGTGGTATTGGTTTGGTGATTACTGGATTGGTGAGATGGTTAGATTAGGGGAATGTCTGGTTACAACTTACAAATGTTTTTTTTTTGTAACTGATACTTGTTTACTCTATATATGCCTGCTTCCTTTGCCAAAAAAAAAAAAAAAAA


gi|167503682|gb|FD988312.1|FD988312 RR4GL58TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
|||||||||||||..|||| |
ACTGTCTTCTCTCGTTCGTTT

EST sequence (targeted fragment marked with yellow):
GGAGGAGAGAGAGTGAGTAGAATTCTGAAGATGAGTACGAGAAGAAGAAAAGCGGAAGGGAAGAGGATTTTAAGAGACATGAGTGAGGAAGAGGAAGAAAATGAGGATACATCTGAAGAGGAAGAAGATGATGATGAAGATGAAGAAGAAGTGGCTATGGAAAAGAAGCAGAAAGGCAAAGCTACTACTACTACAAGTAGTAGCAGTGGTAACGGAGCTTGTCAAGTGGAGAGATGTACTGCAGATATGAGCAGAGCCAAACAATACCACAAACGACACAAAGTCTGCGAGTTTCATGCCAAAGCTCCTCTTGTTCGGATCTCTGGTCTTTACCGACGTTTCTGCCAACAATGTAGCAGGTTTCATGAGCTAGGTGAGTTTGATGACACAAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAATCAGAGAAGGCGTAGAAACATAACTCAATAATAAAAATAAAAAGACATGTGAAACGTCTCATGAACTACTAGCCTTTGCTTGCTCTCTTCTGTCAGTCTCTTTGTAATCTCTCTGTTTCTCCATATTTGCTTGTAATCTCTATTCTCTAGCTATCTTGTAAAACCTAAGACATCAATAAATGCATTTGAAACAAAAAAAAAAAAAAAAAAAA