miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGATTGAGCCGCGTCAATAT
species: Raphanus raphanistrum subsp. maritimus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|161517759|gb|EY897646.1|EY897646 RR1DB09TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence

TGATTGAGCCGCGTCAATAT
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ACTACCTCGGCGCCGATGTA

EST sequence (targeted fragment marked with yellow):
GGAGAGAGAGAGAGAGATGTCTTCAAAGGACAAGCAACCGTCGAAGCCGTCTGGTGGTCGGACCAGTGGTATCCGTACACTTTCCGATCTGAACCGAAGATCAGGACCGGACTCCGACAGTGATTCCGATGGTCCTCAAGAGTACTACACCGGCGGAGAGAAAAGTGGTATGCTAGTTCAGGATCCTTCGAAAGAACCAAAACACGACGATGTTGATGAGATATTCAACCAAGCAAGGCAACTAGGAGCGGTGGAAGGACCTCTTGAGCGTCCTCCCAGTTCCAGCAGAAGCTTCACTGGAACCGGGAGATTGCTTTCAGGAGAAAGCGTGCCAACCGCTCTTCAACCGCCCGAGCCTGTGATTCACAGTATCGTTTTCTGGTCTAACGGTTTCACTGTTGATGATGGACCTTTGAGGAAGTTGGATGATCCAGAGAACGAGTCCTTTCTCGACAGCATTCGAAAGTCTGAATGTCCTAAAGAGCTTGAGCCTGCTGATAAAAGAGCTCCTGTACATGTTAATCTTATGAGAAGAGATGAGATATGCCCCGAACGTGAGAAACCTACGGTTGCATTTCAAGGAGTGGGAAGGACACTAGGAGGTGGTGCTAGCTCATCAACCCCTCCAAGCCTAAGCAACCCAACCGATGTAGCCGCGGCTCCATCACCGTCACAGAGTCTTGTTGTTGTTGATGAAACTCTTCCATCCACATCTATCCAGCTTAGACTCGCCGACGGACACGCATGGTGGCTAAGTTCACAACCATCACACGGTCAACGACGTTCGTTC