| mature miRNA: TTCTTTGCTTCCCCAATGCTG species: Raphanus raphanistrum subsp. maritimus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|167474482|gb|FD958984.1|FD958984 RR1G343JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence TTCTTTGCTTCCCCAATGCTG EST sequence (targeted fragment marked with yellow): TCATCTCTAACCCTAATTTGCTCGGTATCCGATCTCGAACCGAGCACATGATCCAGGAGGACTCCCTCAACGTTCCTCCGCCTCCTGAGCCGCCCACCGATGATCCTATCGCCAAGGAGTTCGAGCCCATCGATTCCGGCAGCGAGCTCGAGGAAGACGATTTTAAGACAGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCCCTTATTACTATGCAACGTACTCATATTAGACGTTTGGTCGAGAAACGTGGAGATGACGTTGAGGCCATGTACCGAGATAGGAAGCTAAACTCGATGCAGCATTCGGTTGCAACTTTGGGGAAGCTATGCACTAGATATTTCATGTACAAGGATAAGAACCCTGTTTTAGTTCCATGCTGATGGAAAAGAAAATTATGCATCACATTTTTGTTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|167476229|gb|FD959216.1|FD959216 RR1G701JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence TTCTTTGCTTCCCCAATGCTG EST sequence (targeted fragment marked with yellow): ACGGTCGCGCCATCCGTTACCCTGACCCGCTCATCAAGCCCAACGACACCATCAAGCTCGATCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGATGTCGGCAACGTTGTGATGGTTACCGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAGAACCGTGAGAAGCATAAGGGAAGCTTCGAGACGATCCACATCCAGGACTGGACGGGGCATGAGTTTGCGACGAGGTTGGGTAATGTGTTCACCCTTGGCAAAGGAACAAAGCCGTGGGTGTCTCTTCCCAAGGGTAAAGGTATTAAGCTTACCATCATTGAGGAAGCCAAGAAGAGGCTTGCTGGTCAACAGGCTGCTTGATTTTTGTGATGTTTCCAGCTCTTTTATTATGTCCTTTTAGACGTTTTACGTTTTCGTAGACTCGCTTCGCTTCTTTTTGTTTTGGAACTTGTGTTATTT | |||||||||
gi|161517610|gb|EY897497.1|EY897497 RR1D940TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence TTCTTTGCTTCCCCAATGCTG EST sequence (targeted fragment marked with yellow): GGGAGCTTTCTTCTTCTTCTTCATCTAAAGAGAGAGAGAAAATCTGTGAGAGGGAGAGACAGAGATGGCGAGGTCAAGGAGAAAGTACAAGAACTCGAGAGCCAAAGTACGCGTGGCTCTACCCAAGAAAAACCCAAACATCTTCAAACCAGCTTTCAACTTCCCTCCCAAGCTCCGCGCTCTCATGGCCGACGACGACGTCCCCGAGTGGGACGACCAGGCTAGCGTCATCCAGAACTACAAATCCTTCGGCGTCATCTCTAACCCTAATCTGCTCGGTATCCGATCTCGAACCGAGCACATGATCCAGGACGACTCCCTCAACGTTCCTCCGCCTCCTGAGCCGCCCACCGATGATCCTATCGCCAAGGAGTTCGAGCCCATCGATTCCGGCAGCGAGCTCGAGGAAGACGATCTTAAGACAGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCCCTTACTACTATGCAACGTACTCATATTAGACGTTTGGTCGAGAAACATGGAGATGACGTTGAGGCCATGTACCGAGACAGGAAGCTAAACTCGATGCAGCATTCGGTTGCAACTTTGCGGAAGCTATGCACTAGATATCTCATGTACAAGATAAGAACCCTGTTTTAGTTCCATGCTGATGGAAAGAAATTATGCATCACATCTTTGTTTCCTCTGCTCTCTCTCATTTTGTTTAATCTTACACAACACTGCACACTATGTTTATCAAGTTCTCTATAATCCAAAGATA | |||||||||
gi|161527178|gb|EY901153.1|EY901153 RR1EE09TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence TTCTTTGCTTCCCCAATGCTG EST sequence (targeted fragment marked with yellow): GGAACTCGATTGCTTGTGCAGCAGCAAACAGCTTGTACATGTATTATGCATGAACTGGAGAGAGATGGAAGATCGCTCCTATTTAGCTTTCCTTTTCTCATTTTTTTCAGACACTCTCTCTTTTTCTCGCTCTCTTTTATCTACCAAAGTGATTATGTAACCAGAAAAAGGTGTAGTAGAAACAGAGTTATGCTGTGTCCAAGACCAAAGCCTGACCAGTCACTGCAACGAAGTTCATCGAAGAAGCAACAGTATATTAGACGGTAAAAAATGTTGGGGTTGGGGAAGAAAAGAAGAATGAGACCTTTTTTACCGTGAGGGTAATTTTCTCAAAATATCTGTCCTACTTAGGTTGTCTTTTTAGTTTCGGATCTATTGCACTCTTTTAAGAAGAAACAGCTTATGGTTAGTGGGATATTTTTTTTTTTTTAGTATGAGACGATGGGAAGGGTTTGTGTTTCAAATTTGTTTATTGATTCTTTTGTCATAT | |||||||||
gi|161514719|gb|EY894766.1|EY894766 RR1DN88JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence TTCTTTGCTTCCCCAATGCTG EST sequence (targeted fragment marked with yellow): TTGGCTTTACCTCTAACGTCTCTGTGCCGCAGCCATCACCTTATCTTCAGCAGCAAGCGTTGTTGCGGAAGCAAAGAAGGTGTTGGACTCCTGAGTTGCATCGCCGTTTTTGTTGATGCATTGCAACAGCTCGGTGGTCCTGGAGTTGCAACTCCTAAGCAAATTAGAGAGCATATGCAAGAAGAAGGCTTAACCAATGATGAAGTGAAGAGTCATTTACAGAAGTACCGGTTACATATCAGGAAGTCTAATTCAATTCCGGAGAAACAACCAGTAGTTGTTTTAGGGTTTAATCTGTGGAATTCATCATCACAAGATGAAGAAGAAGGAGGAGAATCATCAAAGAGAAGCAACTCGCAGTCAGATTCTCCCCAAGGTCCATTGCACTTACCTTGTACAACAACTACTACTACAGGTGGAGATAGTAGCATGGAAGATACTGAAGATGCTAAATCTGAGAGCTTTCAGATTGGGAGAGATTAAAATCTCCATAAATCTCAAAAATCAAGAACCAAATTCTTGATTCCAGTTTTTGGTACTTTAGATTCACACTACTATTGCTAGTAGTAGTGAATGAGAACAATAATTATAGAAAGGATATATAGAGAAAGTGAGAGAGCAAAAGAGTGAGGATGGTTCAAATAATTTTTGTGTACGGCATTTTTGGTTGGGTTTTAATTGAGGTATTACTCTTGTAGTAAAAAAAAAAAAAAAAAA | |||||||||