| mature miRNA: GATGGCGTATGAGGAGCCAAG species: Raphanus sativus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|167428913|gb|FD937090.1|FD937090 RS1H135JQB RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence GATGGCGTATGAGGAGCCAAG EST sequence (targeted fragment marked with yellow): GTAATGAGAGGAAACCTTACAAGTACAACTACTTATGGTGGCCAAACCGGATTCTTCAATTCTGCTCATTTGAAAGCCGGTGATTTCTGTGGAGATCTTCTCACTTGGGCACTGGATCCCAACACTTCTCACTTGCCTATCTCTACTAGAACCGTTCAAGTTCAGACAGAAGTCGAAGGCTTTGTCCTCTCGGCTGAGGATCTCAAATTTTTCTCCACACAGTACCGTCGCCTCCATAGCAAGCAATTACGACACACGTACAGGTGTTATTCAGTGCAGTGGCAGACATGGGCAGCATGTTTCATACAAGCAGCATGGAAGAGATACTGTAGAAGGAAGGTCTCAAGGGCCTTACGTGAAGAAGAAGAAAGACTACAATACTCTCTTCAGACAGATGATTCATCAGGAGGCAATAAACTTAACTTAGGTGCTGCGATTTATGCGTCGAGGTTCGCTTCTCATGCCCTGAGGAATGTAAGGGCGAATGCAGCCGCACGCAACTCCATGCTTCCTCATATGCTATCTTTGTTGCCTCAGAAGCCAGCTGATCCTGAGTTTCCTATGGATGAAACCTAATAATGTTGTGTATATATAAAAAGAAAGAATGTCCCTAGTGATGATTTTAAATAGTTATGTAAACAGTTTCTTTATTAATTGTGCCTACAATGCATTTATTTGCAAAAAAACAAAAAAAAAAAAAAAA | |||||||||
gi|167435252|gb|FD941459.1|FD941459 RS1H135TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence GATGGCGTATGAGGAGCCAAG EST sequence (targeted fragment marked with yellow): GTAATGAGAGGAAACCTTACAAGTACAACTACTTATGGTGGCCAAACCGGATTCTTCAATTCTGCTCATTTGAAAGCCGGTGATTTCTGTGGAGATCTTCTCACTTGGGCACTGGATCCCAACACTTCTCACTTGCCTATCTCTACTAGAACCGTTCAAGCTCAGACAGAAGTCGAAGGCTTTGTCCTCTCGGCTGAGGATCTCAAATTCTTCTCCACACAGTACCGTCGCCTCCATAGCAAGCAACTACGACACACGTACAGGTGTTATTCAGTGCAGTGGCAGACATGGGCAGCATGTTTCATACAAGCAGCATGGAAGAGATACTGTAGAAGGAAGGTCTCAAGGGCCTTACGTGAAGAAGAAGAAAGACTACAATACTCTCTTCAGACAGATGATTCATCAGGAGGCAATAAACTTAACTTAGGTGCTGCGATTTATGCGTCGAGGTTCGCTTCTCATGCCCTGAGGAATGTAAGGGCGAATGCAGCCGCACGCAACTCCATGCTTCCTCATATGCTATCTTTGTTGCCTCAGAAGCCAGCTGATCCT | |||||||||
gi|161558512|gb|EY930710.1|EY930710 RS1DD91TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence GATGGCGTATGAGGAGCCAAG EST sequence (targeted fragment marked with yellow): GGATCCTATCATAAACTAGGAAAAGAAATAGAAAGTAGAGAAACAAGAATGGCTGCGAATCTCAGGAACAATGCTTTCTTGTCTTCTCTCATGTTGCTTCTCTTGATTGGTTCCTCATACGCAATCACAAGCTCAGAGATGAGAACAATCTGTGACAAAACTTTGGACCGAGCTTTCTGTCTTAAATTCCTCAATTCGAAATCCGCATCTCCTAATATTCAAGCCTTGGCAAAAACCACACTTGATGCCACACAAGCAAGAGCAACACAAACATTCAAAAGACTTCAATCTATTATCGATGGAGGAGTTGACCCACGATCCAAATTAGCTTACAGATCATGCATGGATGAATACGAGAACACCATGGAAAACCTCGATGAAGCTTTTGAGAATTTGGCTTCCGGGGATGGCTTCGGGATGAACATCAAAGTTTCAGCTGCATTGGATGGAGCTGATACATGTCTAGATAATGTGAAGAGATTGAGATCTGTAGATACTTCTGTTGTGAATAACAGTAAGGGAATCAAGAAGCTTTGTGGTATTGCTCTTGTTATCTCGAACATGTTACCACGTAGATCCTAATTCTGAACAATCATCATGTGTTTGCACTGATTAAATTATAGTGTTGGTAAGATGACACTTAAATTATTATAATAAAATATTAAAAGAAAGTAATCTCACGCATTTCATTTCAGTATTTCTTTTCCTTTTTAATGAAATTCATTTCACCAAAAAA | |||||||||
gi|156177075|gb|EW737221.1|EW737221 RS3A749JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence GATGGCGTATGAGGAGCCAAG EST sequence (targeted fragment marked with yellow): GGATCATAAACTAGGAAAAGAAATAGAAAGTAGAGAAACAAGAATGGCTGCGAATCTCAGGAACAATGCTTTCTTGTCTTATCTCATGTTGCTTCTCTTGATTGGTTCCTCATACGCAATCACAAGCTCAGAGATGAGAACAATCTGTGACAAAACTTTGGACCGAGCTTTCTGTCTTAAATTCCTCAATTCGAAATCCGCATCTCCTAATATTCAAGCCTTGGCAAAAACCACACTTGATGCCACACAAGCAAGAGCAACACAAACATTCAAAAGACTTCAATCTATTATCGATGGAGGAGTTGACCCACGATCCAAATTAGCTTACAGATCATGCATGGATGAATACGAGAACACCATGGAAAACCTCGATGAAGCTTTTGAGAATTTGGCTTCCGGGGATGGCTTCGGGATGAACATCAAAGTTTCAGCTGCATTGGATGGAGCTGATACATGTCTAGATAATGTGAAGAGATTGAGATCTGTAGATACTTCTGTTGTGAATAACAGTAAGGGAATCAAGAAGCTTTGTGGTATTGCTCTTGTTATCTCGAACATGTTACCACGTAGATCTTAATTCTGAACAATCATCATGTGTTTGCACTGATTAAATTATAGTGTTGGTAAGAT | |||||||||
gi|167442933|gb|FD949106.1|FD949106 RS2H645TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence GATGGCGTATGAGGAGCCAAG EST sequence (targeted fragment marked with yellow): GGCTATCATAAACTAGGAAAAAAGATAGAAAGTAGAGAAACAAGAATGGCTGCGAATCTCAGGAACAATGCTTTCTTGTCTTCTCTCATGTTGCTTCTCTTGATTGGTTCCTCATACGCAATCACAAGCTCAGAGATGAGCACAATCTGTGACAAAACTTTGGACCGAGCTTTCTGTCTTAAATTCCTCAATTCGAAATCCGCATCTCCTAATATTCAAGCCTTGGCAAAAACCACACTTGTTGCCACACAAGCAAGAGCAACACAAACATTCAAAAGACTTCAATCTATTATCGATGGAGGAGTTGACCCACGATCCAAATTAGCTTACAGATCATGCATGGATGAATACGAGAACACCATGGAAAACCTCGATGAAGCTTTTGAGAATTTGGCTTCCGGGGATGGCTTCGGGATGAACATCAAAGTTTCAGCTGCATTGGATGGAGCTGATACATGTCTAGATAATGTGAAGAGATTGAGATCTGTAGATACTTCTGTTGTGAATAACAGTAAGGGAATCAAGAAGCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTAGATCTTAATT | |||||||||