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mature miRNA: GATCATGTTTGCAGTTTCACC
species: Raphanus sativus var. oleiformis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|156154697|gb|EW714843.1|EW714843 RS1A485TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence

GATCATGTTTGCAGTTTCACC
.||||||| || |..||||||
TTAGTACACACTTTGAAGTGG

EST sequence (targeted fragment marked with yellow):
GAAGGAAACTCCATGAGAAGAGTCAAGGAGAAACAGAATAAAACGTGGTGGCTTAAGCTTCCCTATGTGCTGAGAATTCTAATGCGGAGTAATATCGACCAAGAAATATCTGAGGGGTACTTTACTATGAGGACCGAACCTATGGAACAAAACAAGGGTGAAGTTTCACACATGATTGCATTTGAGGATCAAAGTGATGCAATAAACTTCTCTTATCTGCTGGAGTCAGTTTTTGAAGACTTGGATGATTTCAGCGCCAATGTAGTTCCCATATCAACCAAGGATCTTTATAACGAAGTAAGTTCTGGTGGCAAGAATGTGATTGTTGTGAAGAAGCGGCAACTAAAGCTGTATGCTGGACAACCATTTGAAGATGTTGAAAGAGCCCTCCATACTCTTATCCAAGAACAATGATATAGTTAATATTACGTAGGATCTTCCCAGGTTTCATCTGATGGCTTGTAAGGGGTGTATTTGAATGAACAAGGTGATTATATGTTTTCTACAAT