| mature miRNA: GTATAGCATCATGAGCAATCA species: Raphanus sativus var. oleiformis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|156158000|gb|EW718146.1|EW718146 RS1AT77TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GGGTTTGCCTGATATTTCATTACTACAAGAACAGTTTGAAACGATGGCGTATGGGAGTACTGCTATGTGTGGAAGAGACACGTTCTGGTTCTGGATCATTTCAGCTGTTCCATTTATTGGTTCTACATGGGAAACCTATTTTACCAATATACTTACTCTTCCGGTAGTCAATGGTCCTACAGAAGGTCTTGCACTTATATACTGTGGTCACTTCTTCACAGCCATTGTTGGTGCTGAATGGTGGGCTCAGCAGTTTGGAGAGTCAATCCCCTTGTTTAGTTGGGTGCCCTTCTTGAGCGAGATTACTACATCGAGAGCAGTACTATTAACGATGATTGCTTTTGGTGTTATACCAACATTTGCATTGAGCGTGTCGAATGTATACAAAGTTATACAGGCAAGAAAAGGAAGCATGTTTCTAGCATCGTCTATGCTGTTTCCCTTCGTTGGGCTACTTGCTGGAGTTTTGATTTGGGACTACTTGTCTCCAACTGATCTCATAAGAAACTACCCTCACTTAGTTGTATTGGGAACTGGTCTTTCATTTGGATTCATTGTGGGAAGAATAATTCTAGCTCACATATGTGATGAACCAAAAGGATTAAAAACAAACATGTGCATGTCACTGCTTTACCTTCCCTTTGCACTAGCAAATGCTCTAACCGCTAGACTCAACAACGGGTTGCTCTTGTGGATGAGTTTGGGTT | |||||||||
gi|158920242|gb|EX891908.1|EX891908 RS1BY81JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TCGAGAGTAGTACTAATAACGATGATTGCTTTTGGTGTTATACCAACATTTGCATTGAGCGTGTCGAATGTATACAAAGTTATACAGGCAAGAAAAGGAAGCATGTTTCTAGCATTGTCTATGCTGTTTCCCTTCGTTGGGCTACTTGCTGGAGTTTTGATTTGGGACTACTTGTCTCCAACTGATCTCATAAGAAACTACCCTCACTTAGTTGTATTGGGAACTGGTCTTTCATTTGGATTCATTGTGGGAAGAATAATTCTAGCTCACATATGTGATGAACCAAAAGGATTAAAAACAAACATGTGCATGTCACTGCTTTACCTTCCCTTTGCACTAGCAAATGCTCTAACCGCTAGACTCAACAACGGGGTTGCTCTTGTGGATGAGTTTTGGGTTCTTCTTGGTTATTGTATATTCACAATGGCACTATATATGCATTTTGCAACCTCAGTCATTCATGAGATCACTGCTGCACTTGGAATCTACTGCTTCAGGATTACGCGTAAAGAAGCTTGAAGGAAGCTTAAGGGAGGATAATGCAAATCCCAACACGAATCTTGATATTATTTTTTTTACTGAAATTAAACGACTGATCGATATATTTTTGGATGAATAGCCTTTAATGTTTTCATTTTGTTTGGTCGAAATAGGTAATTCATGTAGAACTATTTTTGTAACGTTTTCTACGGAAAAGAATGATTTTTCGTGATTATTTATTTATGAATTTGGTTAAGAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|167430483|gb|FD934475.1|FD934475 RS1FX22JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TCACAGTCCACCCTTAAGGTGAGAAAGGAGAAATTAGGAGGCCGGATCGCAGTGCTTCATCAGCTAGTATCTCCTTTTGGCAAGACTGACACAGCTTCTGTCCTGTCGGAAGCTATTGGATACATTAGATTCCTTCACAGTCAAATTGAGGCTCTGAGTCATCCATATTTTGGTACAACTGCCTCGGGGAATCTGAGTAACCAACATTTGCGAGGAGACAGAAGTTGCTTATTTCCTGAGGACCCTGGTCAGCTTGTGAATGATCAATGCGTGAAGAGAAGATCATCTACAGAGGTTCAGAATGCAAATGAAGAACCTAAGAAAGATTTAAGAAGTCGGGGTTTATGTCTTGTTCCAATCTCCTACACACTCCAAGTTGGCAGCGACAACGGCGCCGACTATTGGGCTCCGACACTCGGCTCCGCCAGTTTTCACTGAGACAAAGAAACTCTACCACGTGGAATTCCAACCTTAGAGAAAATGATATAACATCACGAGCAGTCAATCTATTGAGAAACCAACAACTGAGTTTCCAAGACTGATTGCTCATGATGCTATACAAATTAAGTACTTGGTTTAATAATTTGCGTTTGGCGTTTCATCATTTGTTGTTGTGTGTGCCATTAGCTGATCAAAGCATATTCTGTCCTTCAGAAAACTGTTTGTTAATGTTTTTAATGGTTCAGTGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|166134109|gb|FD567541.1|FD567541 RS1FI22JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GACTATGAGAAGAAGGAGAAGCAAGCCGATGTTCGCAAGAAGATTGATTACTCGATGCAGCTAAATGCGTCAAGGATCAAAGTTCTTCAGGCGCAGGATGATATTGTGAATGCTATGAAAGATCAAGCAGCAAAGGATCTTCTCAACGTCAGTGGCGATGAGGATGCCTACAAACAGCTTCTTAAGGATCTCATTGTCCAGTGTTTGCTAAGGTTGAAAGAGCCTTCTGTGTTGTTGCGTTGCCGCGAAGAGGATTTGGGTTTAGTTGAATCTATTCTTGATGACGCAAAGGAGGAGTATGCTGGTAAAGCAAATGTTCATGCTCCAGAGGTTGCCGTGGACACAACCATCTTCCTTCCCCCTCCTCCTACTTCTAGTGATTCTCATGGTCTCCACTGCTCTGGAGGTGTTGTGTTGGCTTCTCGGGATGGAAAAATCGTGTGCGAGAACACACTCGATGCACGTCTTGATGTGGCATTCCGTATGAAACTTCCAGTGATCCGCAGGTCGTTGTTCGGCCAAGTTGCTGCCTAATGAATGGAAAGAGACAGAGAAGTGATTCAGACCGGTTTGTGTTTGGTTTTTTACCCATCTGGGAAAGATTTCTATTTGTTGTGATTCTTTTATGTTCTCTTTCATGCCATAAAACCCATCGAACTCTTTGTTTATGCATCTGTATTTTTTCCTCATGCCCGAGTGTTATCATTGGCTATAGAAATAAATGAAGAGACGAAAGACTTTGTTTTTTTGGTTCTGATGATGACCCATGATGCTATATGTGGATTTTAGGCGAAAAAAAAAAAAAAAA | |||||||||
gi|161556737|gb|EY928951.1|EY928951 RS1E944JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): TTCGTTTACAGAGAATCAGAATGCAAATGAAGAACCTAAGAAAGATTTAAGAAGTCGAGGTTTATGTCTTGTTCCAATCTCCTACACACTCCAAGTTGGCAGCGACAACGGCGCCGACTATTGGGCTCCGACACTCGGCTCCGCCAGTTGTCACTGAGCCAAAGAAACTCTACCACGCGGAATTCCAACCTTAGAGAAAATGATATAACATCACGAGCAGTCAATTTAATGAGAAACCAACAATTGAGTTTCCAAGACTGATTGCTCATGATGCTATACAAAGTACTTGGTTTAATAATTTGCGTTTGGCGTTTCATCATTTGTTGTTGTGTGTGTCATCAGCTGATCAAAGCATGTTCTGTCCTTTAGGAAACTGTTTGTTAATGGTTCATTGTAATTTGTGGTTAAGTACTTGAAGCAAAAAAAAAAAAAAAAAAAA | |||||||||