miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCGATAAACCTCTGCATCCA
species: Raphanus sativus var. oleiformis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|167435178|gb|FD938760.1|FD938760 RS1G648TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence

TCGATAAACCTCTGCATCCA
.|||||| ||||| |||||
GGCTATTCGGAGAGTTAGGT

EST sequence (targeted fragment marked with yellow):
GGAAAGTTAACAGGATGAAACTGAGATAGGCGGCGGCGTAGTCTGAATCGAACTTGAGAGAGAAACAAAATAGTTCTTCCTTTATTCTTCACCTAAAGCAAAGTGACGTGGAAGCAAAAAAGAGTAAGATGAACGACGACATGAACGAAGTGCTGAACAGATTCAAGGAAGAGAGAGAGCAGCTGATGAAAACATTTACCGAAGGGTACAAGAAGCTACTCAAGGACAAGGACGAAGAGCTCGAGAAAATGTTCAAGGACAAGAACGAAGAGCTCAACGAAGCAATGAAGGAAGAGCGTAGCGGGTTTGAAGATCTAGAGTATTTAAACACAGCCCTCTGCATCAAATTACGACAAACCAATGATGAGATCCAAGAAGCACACAAAGAATTGATCACTGGATTGAGAGGCTTATCGGGTGAAAGATCCACGATCAGAGTAAAGACGATGGGACAAGTTGATGAAAAGCCTTTCCTGAAAGTATGCGAGCAGAGATTCAGTTGCCAAGACGTTGCGCTGCAAAGCGCCAGGCTTTGCTCGGAATG