| mature miRNA: TCTCTGGCTTGGTACTTTTGA species: Raphanus sativus var. oleiformis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|166136059|gb|FD567506.1|FD567506 RS1FH60JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence TCTCTGGCTTGGTACTTTTGA EST sequence (targeted fragment marked with yellow): CAGTGGCACATTGGTGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTATTGCTATCCAGGCGCCGGTTTTGAAGAAGTATCCGGCAAATCTTTCGGTTGCTGCGTTGTCATACTTCTCCGGTACAGTGCTAATGGTCACAACAGCTTTCTTTATGGCAAAGGAGCCATTAGATTGGAAGCTAACACAAGCTGAAGTTCTCGCTGTTATATATGCAGGAGTTGTAGCGTCAGCACTAAACTTTGGAATGTTAACTTGGTCCAATAAGATAATTGGTCCTGCATTGGTTGCTCTCTACAATCCTCTTCAGCCTGCTGCATCAGCTTTCCTATCGAGAATCTTTCTCGGTAGCCCTATCTTCCTCGGAAGTGTTGTGGGTGGGTTTTTCATCATTTTAGGACTCTATATGGTGACATGGGCATCGTTTAGAGAGCGGAAAGCAGTGGCTTCCGGGATTGGGATACCGTCTCATAGTGCAAGAACCTCGGAGCCTCTGAAGAAGAACCCAGTTGTTAGCAGACTAGGGCAGTTGTTTTCTGGACTAGCCGGTTCCCCTATGAAATCTGCAGACTAAAAAAGGAAAGAAACCATAAAGTTAAAAGAAACAAACCAGAGAACCTATTTTTTATAAAAAAAGGATTGGATTTTTAAAAAAAAAAAAAAAAAAA | |||||||||
gi|167433804|gb|FD941736.1|FD941736 RS1H456TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TCTCTGGCTTGGTACTTTTGA EST sequence (targeted fragment marked with yellow): GGATGGCTAAACGTTTTCAGCTTATTCTTCCTCTCTTCTCAACGATTCTTCTTCTTGCCGTCACTGCTGCAGAATCCAACTCTTACTCCAAAACGACTCCGTTTCAAGAATACAAGCCAGAGAAACTCACGCACCTCCGCTTCTACTTCCATGACGTCATATCCGGTGACAAGCCCACCGCCATAAGAGTCACAGTGCCCCCCGTCGTAAACTCCTCCGCCGTCTCATCATTTGGTGTGGTTGTGATAGCCGACAACCCTTTGACTGAGGGACCCGACCGGAGTTCCAAGGAAATCGGGGGGGCTCAGGGGATGTATGCGTCAACGGATATGAACACCTTAAGCTTCACCATGGTGTTTAACTTGGTGTTCACGGAAGGTGAGTTTAACGGCAGCACCGTCTCTATGTACGGACGGAATCCTATATTCTCAAAAGTGAGAGAGTTTCCGATCATAGGAGGTACCGGTGCGTTCAGGCTCGCTAGAGGCTATGCACAGGCCGAGACTTACTCGATTAGTGGTTTGGATGCCGTGGTCGAGTATAATGTCTTCATTTCGCACTAAATGATGATGAAAGACAAATATCGAACTTGGCACGCACGTGAGGACTAGAGTAAATGAAAGTAACCAATAACGCTGAATCGTTCAAACACTTGGCAGTAATTGTTTGGGACTCTTTTTTAATGTAATTCGAGAATAAATTGTACTTACACTTCTTTTGTTGATGTTCTTATCTTTTGATTTTGTTTTCTTTGAAACCTGATGTTGTTATTGTTGTGTGTGTCGACTAAAGTCAATA | |||||||||
gi|158913630|gb|EX886278.1|EX886278 RS1BG35TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TCTCTGGCTTGGTACTTTTGA EST sequence (targeted fragment marked with yellow): GGATTCACGCACCTGGAGCAACGGCTGATGCTCCTCCAGCCACCATCTCAACCTCTCGATTCTCCGTTGGGAAACAGAAATTGGTAGGCGAGTGATGTCCAATCAGCTGAATCGCTGCGATGTCGTAAGCACGAGCGGCTTCTTCTGCTGTGTCGAAAGTTCCAAGCCAGGGACGGTCTCTTCGTCCCTTTCTTATTTCAGCCACCTATTTCCCCCACGGTCTCAGCCTCACTCCACGGAATTTCTTATCTTTCTTCTCCTTTGCCTTCGCGGTAGCCGCCTTGAGAAACTCCGCCGGGATCCTGATTTTGAACTTCGGCGTCGGTGATTGAGATTCTGACAATACGCTTCATTTAGGGGATGGATGGTGAATTTGAAATGTTTCTTTTAAGGTTCCCTAAAAATAAGGAAGGAAAGCATAGTAGTAGAAAATAGTTTTTTGATTCTTGCAGAATATGTTTTTATTCTCTCGGAATCTACTATCCACTTAATTTTCTTTATAATTTTTTTTTGTAACCAAATCATGAATCATTTCCAGAATAATCTCTGA | |||||||||