| mature miRNA: TGACAGAAGAGAGAGAGCACA species: Raphanus sativus var. oleiformis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161558544|gb|EY930450.1|EY930450 RS1DA94TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TTTTTCGCCTTTTTTCTTATATTTTCTCTCTGAGTTTCCCTCTGCCTCTCTCTGTTATTCTAATCGTTTTTGCTGATTCGATGGATTCTTGGAGCTACGGGAGAAGCGTTTTCTTGGCTAATGGGTCAGATTCTTTTGCTGAGAACCAAAGATTCATGCCTGGATTTGAACAGGGTCTCTCCCCTCAGTTGGAGACAAGTAATGGATTCATTACCAAAGTGGCTTCTTCTTCCTCTTGTGTCGTTGAGGAGAACCAATCTTCCAACTTGTCTAGGATAGATTTCAAACTCAGGAGCTTTATGGATTACGGGAACCAATCTTCCCTGCCGGCTAAAAAGACTCTGAGAGCTGCTTCGAACTCGTGCTCCCAGAGCCCCTTGTGTCAAGTCCATGGGTGCAATATGGATCTCAGCTTCTCTAAAGATTACCACAAAAGGCATAGAGTCTGCGAGGCTCATTCAAAGACTTCTGTGGTTATAGTTAGCGGTACCAAACAAAAGTTTCTCAATCACTCAACCAAACCAAAGTATTAATCACTCTAAAGTTTCATTTTGTGAGTAATGGCTTGTCCTTGGTCTTTTTGCCAGAGTCGTTTCCTGGTAGTTTCTTGTACAGAGTAGTGGATGAGCACGACCACCACCGTGCAAGTAGACTCGTGAGTTTCAAAGATGAACCTAAACAAGAGTCTGGTGTATCTTATATTTGGGACTTGCAAGAGGCGTGCCGCCGCCGCGCTCTACTTGTGCTCTCTCTCTTCTGTCAGCTC | |||||||||
gi|156160453|gb|EW720599.1|EW720599 RS1AW21JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TGCAAAGCCTGGCAGTATGTTTCCAGATTCTTCTTCTCTAAATAGCAGAGGGAAACAGTTCCCTTTCTTGCAAGAAGAAGTGAGCTCGAGAACAGCATTCTTGTGTGAGAGAATGACGAGTTGCGTCCATGACTCTGATTGTGCTCTCTCTCTTCTGTCACCATCTTCCTCATCAACACCTCATTTGCTTCAGCCACCACTTCCTTTGTCCCAAGAAGCAGTAGAGACGGGTTTTAACCAGTCCGGATTGTTTGAGAACGCGAGTGCAGTCTCTGATGGATCGGTTATATCCGGTAATGAGATTGGGGCTCTTCCGCAAACGTTCCCGTTTCACTGGGAGTAGTACAAGTAGATAGATAGAATCAGAAAGATGTGTGTATGTGCCTCTTTTTCTATTCTCTTTTCTTTCTCTAATTTTTCAATGTTCTTTTATCTTGTTAAATGATGAATTATTGGTGTATAAACGGCATTCAATTATT | |||||||||
gi|156160197|gb|EW720343.1|EW720343 RS1AN39JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): TCTCTCTCTGTGTTGTCTTCTCGTTACGGGAGGATAGCACTTTCGCTTTACGGAAATGCTGAAACTACAATGAATGGGAGCTTTCTTGGTTCCCAAGAAATGGGTTGGACAAATACAAGAACGTTGGATACAAGAGTGATGAGACGACCGTCGTGGCAGATTAATCCGATGAACGTGTTTAGTCAAGGATCAGTCAGTGGAGGAGGAGGAGGAGGGATAAGCTTCGCATCTCCAGAGGTTATGGACACTAAACCAGAGAGCTACAAGGGAATTGGCAGCGACTCAAACTGTGCTCTCTCTCTTCTGTCAAACCCACATCAGCTACATGACAACAACAACAACGACAACAACACATGGAGAACTTCTTCAGGTTTTGGTCCGATGACGGTTACAATGGCTCAGCCACCACCTGCACCTAGCCAGCATCAGTATCTGAACCCGCCTTGGGTGTTTAAGGACGATGACAATAACTGTCAGAATGATATGTCTCCTGTTTTGAATTTGGGGCGATTCACCGAGACAGAGATGGGCGGTGGAACGACAATGGGTGAGTTCGAGTTATCTGACCATCAACATCAGAATAGGAGGCAGTACATGGAAGGTGAGAACTCAAGGGCTTATGACTCTTCTTCACACCATCACAACTGGTCTCTTTGAGTCTCTTTGCATCAGACAATCATATTCTTGTTATATTTCTCTTTTTTTCTGTTATTTGCTTACTAATAAACCCAAAAATTGTTTCCTGACATTGGCTTTTGTTTATTTATGCTTCTTGTTTGTTGTTTTCTCTTTCCAAGCTAAGAGATCAGATTTGAT | |||||||||
gi|166130488|gb|FD562195.1|FD562195 RS1EW67TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GGAGATTCTTGCTCCGGTTCGAAAAGTTGTACCTTTTGATTTCTGAGTTCTTGATTTCGCTTTATCGGTGTAAGAAAAGGACATATCAGTTGAAGTGTTGGTTGGGTGTTTGGTTCTCAATCTCACGAGATAACTTAGGGTTTCTTGTTGTTCCCCACAAGAAAGTTTTCTTTCTTTCTTCTTCTTGTGACTTCTTCGCCTAACCTATTTTCCTCGATTTAAGAAAGCAGAGGTGGGGAGACCAAAAAAATAAATAAATAAAACATCAAAGTCTCTCTCTCTTTTGTCAAACAATGGAAGCATCTAGTGATGATGAGAAGAGACCTATGGTTGACTTGATCAAGGACAAAAATGGAACCGATCAGGTTCTTCTTCAGAATCCTAAAGGAGCTTCTGTAAAGATTAGTTTACATGGAGGACAAGTTCTTTCTTGGAAGACTGAGAGAGGTGATGAATTGTTATTCACCAGTGCCAAGGCTAACTCAAAGCCTCCCCATCCGGTACGAGGAGGAATCCCTATATGCTTTCCTCAGTTTGGAACTCGAGGATCACTTGAGCAGCACGGTTTTGCGAGAAACAAGATGTGGCTTGTGGAAAATGATCCTCCTGCTTTACCTTCATTCGACTCAACCGGCAAAGCCTATGTGGATTTGGTACTTAAGTCCTCTGATGAAGACACAACAAGGATCTGGCCTTACAGCTTTGAGTTTCACTTGAGAGTTTCATTGGGATAGATGGGAACCTATCGCTGATATCACGAGTCAGAAAATCAACTCAAGCCTTT | |||||||||
gi|161558823|gb|EY930767.1|EY930767 RS1DE57TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GGAGATCTTCAAACCCTAATTCATGAATCATCTCGGGAACCTTTGCTCTTCCTCTTCTTTCACGATTTGATCCTCGAACAATCAATACGTCCTCTACTTCGTCTCCCTTTACTCTCATTAATGGATTCGCTTTGCTTTTCTCATTCAGATTTTGTTTTATTTTGATCAAACTTGGTCCTATAGTCTCATTTCTAGCAATCGCGGTCCCAGCTTTCCCTTGCGTGCGGTTACCTCTCATTCACCAGTCTCAGGGATGTGAACGTTTGTGTAAGTACGGTTTAGCGTTCGCATTTCATGAAAATTGGAAAACTAAGGATCTGAACCAAAAGTTTTGTTGGAAGCTGTTTATTTCTCAACGCCACTTTTGCAACACACATCTACTTAGACTGACACAGCTGTTTTAAAAGAACACTATACAAGGTAAGTAACTCTACTATGAATATAAGATAAACAGCACCAAATGCACATTAAATATAGCCATATGATTTCCTTTAATGTTTTATTTTCTCACATTTATACTCTCCTTTATGTTGTTTAGAAATGGCTCAAACCAAACTGCCTCTTCATCAAAGTTGCTTCATGCCCAGAATATAGAATCTCTCACTGTTTCAGAGCTTAACCAATATGTCCTCGCAGCTGAACCTCAGCTGAGAGTAACTTTATCTTAAGTTAGTTATCTGATTGTCATTTCTAATTGTTCAAGTCTCCTTAGTGAGGACATATAATTGAGCTGCTTTGTACTGCCAAAGTGACTGGTATCAAGA | |||||||||
gi|166132196|gb|FD560558.1|FD560558 RS1ED94TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): GGGAGAGAGAGTGAGTAGAATTCTGAAGATGAGTACGAGAGGAAGCAAAGCGGAAGGGAAGAGGATTTTAAGAGACATGAGTGAGGAAGAGGAAGAAAATGAGGATACATCTGAAGAGGAAGAAGATGATGATGAAGAAGAAGAAGAAGTTGCTTTGGAAAAGAAGCAGAAAGGCAAAGCTACTACTACTAAAAGTAGTAGCAGTGGTACTGGAGCTTGTCAAGTGGAGAGATGTACTGCAGATATGAGCAGAGCCAAACAATACCACAAACGACACAAAGTCTGCGAGTTTCATGCCAAAGCTCCTCTTGTTCGGACCTCTGGTCTTTACCAACGTTTCTGCCAACAATGTAGCAGGTTTCATGAGCTAGGTGAGTTTGATGTCACAAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAATCAGAGAAGGCGTAGAAACACAACTCAACAATAAAAAAAAACATGTGAAACGTCTCATGAACTACTAGGCTTTGCTTGCTCTCTTCTGTCAGTCTCTTTGTAGTCTCTCTGTTTCTTCATATTTGCTTGTAATCTCTAGCTATCTGCTAAAACCTAAGACATCAATCTGTATCTGTTTTGCA | |||||||||
gi|167428651|gb|FD936648.1|FD936648 RS1GU37JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): CAAGAGTGATGAGACGACCGTCGTGGCAGATCAATCCGATGAACGTGTTTAGTCAAGGATCAGTCAGTGGAGGAGGAGGAGGAGGGATAAGCTTCTCATCTCCAGAGGTTATGGACACTAAACCAGAGAGCTACAAGGGGATTGGCAGCGACTCAAACTGTGCTCTCTCTCTTCTGTCAAACCCACACCAGCCACATGACAACACCAACGACAACAACACATGGAGAACTTCTTCAGGTTTTGGTCCGATGACGGTTACAATGGTTCAGCCACCACCTGCACCTAGCCAGCATCAGTATCTGAACCCGCCTTGGGTGTTTAAGGACGATGACAATAACTGTCAGAATGATATGTCTCCTGTTTTGAATTTGGGGCGATTCACCGAGACAGAGATGGGCGGTGGAACGACAATGGGTGAGTTCGAGTTATCTGACCATCAACATCAGAATAGGAGGCAGTACATGGAAGGTGAGAACTCAAGGGCTTATGACTCTTCTTCACACCATCACAACTGGTCTTTCTGAGTCTCTTTGCATCAGACAATCATATTCTTGTTATATTTCTCTTTTTTTTTTCTGTTATTTGCTTTACTCATGAACCAAAAAAATTGTTTCCATACATTGGCTTTTGTTTATTTATGCTTCTTGTTGGTTGTTTCCAAAAAAAAAAAAAAAAAAA | |||||||||
gi|161554383|gb|EY926473.1|EY926473 RS1D835JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence TGACAGAAGAGAGAGAGCACA EST sequence (targeted fragment marked with yellow): AACCCATTCAAAGTGCCCCAAAGTTACTGTGAGTGGCGTGGAACGTCGGTTCTGCCAACAGTGTAGCAGGTTGCATGCCGTCTCTGAGTTTGATGGGAAGAAACGAAGCTGCCGCAAACGTCTTTCTCATCATAATGCTAGGCGTCGCAAGTCACAAGGAGTTTTTCCATTGAATCCAGAGAGGGTCGTGTATGATCAAAAGTTTGCATGGGGTACCACTTATGATACAAAGCCTACACAGATGGAAACTGGCTTTACCCTGAGCTTCCAGAGAGGCAATGGCTCTGAGGAGGAGCAGTTGTTTGCTAGTACCAATCACCCTTTATCTGCGTATCAAACCTCAGCAGGGAAGAACAAGTTTCATCTTGGTATTTTGCACTTCTTCACTGATCTTTTTAATATATATGGGTCTAGTAGATAATCTATAGTCTAGTTCCTTTTGAAATAAGGTGAACTGGTTTTTGGCAGATGTGGGAGAATACTCAGGAGTGCTCCATCAATCTCACCGTGCTTTCTCTCTTCTGTCAACTTCTTCTGCTCCCCTGGTTCACCCACATGCACAGCCACTCTCTTTACTTTTTTCATTTGATGGTTTACCAAAATAGGTGAGTAAGTAATGTGATATCTGTAAAATCAGTTAGCTTCAGTTAGTGGATACTAATCCAAACCTATCAGCGCAAAAAAAAAAAAAAAAA | |||||||||