| mature miRNA: CTGCACTGACTCTTCCCTGGC species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|35995926|gb|CA276281.1|CA276281 SCEPSD2004D09.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCEPSD2004D09 5', mRNA seque CTGCACTGACTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GCTCCTCCCCCTCGACGCCCCCCACCCCCGGCGCCGGCGGCTCGCCCAGCCCCAGCACACCCACCACCCCCAGCGCCCCCGCCCCTGGCACTGGCACTGGCACCCCGGGCAGCGCGTCCGTGCGCCTCACGGCCGGCCCCGCACTCGCCGTGGCCGCCGGCGTGCTTGTCAAGCTCGCCCTCTTCTGATCATGCACCGTACCATCCTGATCTTGCGAGGGTAGAGGCAGTGCAGGATTATTATTCTTGTTGATGAGCTAGCGTTTTCATTCTGACGGCCGGTATGTACGTACGGTAGAGAGCTAGCTACTATACACTGGTTATTATTTGCTGGTTTAATTTCGTGATGTACTACTGTATCATTGATGCATGCTTTCTTTTCTTTAAAAAAAAACAACNATACATCCCACACCAACANACATCATTCCACTCATTTCTTACTAAAACAATAACTAANTGGGGGGGC | |||||||||
gi|268795690|gb|DV641415.1|DV641415 SUR01-190-G11-A-084.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SU CTGCACTGACTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): AACCACGGATTCCCGCCTGTTAGGTCCAGATCTGGTCAAATCCCGCCTGATGCTAGCAGATCCGGTGGCCATCACGCATCTCCCCTGCACAGGCTTGCAGCTCTCTCATTCCTCCTCGGCGCCGTCATCCCTCTTCGGGTCGCGAAGCACACATGCCGATCTTGGGGATCGCCGCGTCCGCGCCACCGGCAGCGGCAGTGTCAAGTAATAGTGAAAATGGGCGGTTCAGTTATGGAGTTGCGAGTTCTCCTGGGAAAAGAGCATCGATGGAGGACTTTTATGAGGCAAGGATAGACGACGTTGACGGAGAGAAAGTTGGAATGTTCGGTGTATATGATGGTCATGGAGGAGTCAGAGCAGCTGAGTATGTTAAGCAGCATCTTTTCAGCAATTTAATCAAACACCCAAAGTTCATCACT | |||||||||
gi|36048400|gb|CA291532.1|CA291532 SCCCNR1004B07.g NR1 Saccharum hybrid cultivar cDNA clone SCCCNR1004B07 5', mRNA sequence CTGCACTGACTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CGACTTNCNGGGTTTACCCACGCGTNCGCTCGTGCATCCGTTTTCCCCACCCCCTGCTTCCCGGCTTCCCTCCCCTTTTCATGCGCGAGGAGGGGCCGTGGGGACCAGCACCAGCACCAGCACCTCCATCCGCGCGCCTCTCGCCCCCGCCGCTCTCGCTGGTGGTGCTCCTCCTGCTCGCGGGGCCCTCCTCCTGCTGGTGCCAGGGCCGGGAGGGCGGCGCGGAGGTGGCGCGCATGGGGCTCGCCGGGGACGGGTCGGCGGACACCGCCCACCTCAGTAATAGTGAAAATGGGCGGTTCAGATATGGAGTTGCGAGTTCTCCTGGGAAAAGAGCATCGATGGAGGACTTTTATGAGGCAAGGATAGACGACGTTGACGGAGAGAAAAGTGGAATGTTCGGTGTATATGATGGTCATGGAGGAGTCAGAGCAGCTGAGTATGTTAAGCAGCATCTTTTCAGCAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCTGCTATCGCCGAAACTTACCACCACACAAGATCAGAAATTTTGAAAGCTGATAGCAGTCAAACTTGAGATGCTGGCTCAAATGCCTCAACAGCTATTATTGAAGGGGGACCGTTGCTTGTTGCATATGGTGGAGAATCTAGAACTGGTATTTCTAAATGAGGACAGGGGTTCCAAGCTATCACATTCCACTAATGGCTCAGAAATTTATGATGGTTCCCCATCTTGACCTGCACCGAATGGCGGTTCAAGGGA | |||||||||
gi|36032561|gb|CA286545.1|CA286545 SCBGSD2050G05.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCBGSD2050G05 5', mRNA seque CTGCACTGACTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CACCGTACCATCCTGATCTTGCGAGGGTAGAGGCAGTGCAGGATTATTATTCTTGTTGATGAGCTAGCGTTTTCATTCTGACGGCCGGTATGTACCCGCCGTACAGAGATAACCGACCTACTCTGCCCTTCTGCCGGCGATGCGCTCCTGGGCTGAACTGGTCGGTCAGTGACGCATGCTCTCTTTTCTTTATTAGAGTTTGCCTTCGCTTGTGTATCTTCTTCATTCATGGTGTCTTATTATTTCTCTTCTCCATCTATATATATGGACATATTTTTGTATAATATGATGATTTTATTTACTACTGTGATATATATCTATTTNT | |||||||||