miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CTGCACTGCCTCTTCCCTGGC
species: Saccharum officinarum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|166789588|gb|DV732063.1|DV732063 SUS01-061-A11-A-083.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA c 

CTGCACTGCCTCTTCCCTGGC
|||||| |||||||| || ||
GACGTGCCGGAGAAGAGAGCG

EST sequence (targeted fragment marked with yellow):
CACAAACTTCTATCTAAGATGGGTTGGAGGGAAGGTGAGGGTCTTGGTAGCGAGAGAAGAGGCCGTGCAGATCCCATTATGGCTGGAGATGTGAAGAAGGATCATCTTGGTGTTGGCGCGGTCCAGCCTGGTGAGGTCACATCTGAAGATGACATCTACGAGCAATACAAGAAGCGAATGATGCTTGGATACCGCTATAGGCCGAACCCTCTGAACAATCCAAGGAAATCATACTACTGATACAGGGGAGTTCGTCCGAGGGGAGATCAGAAAAGTCAAGAAGTTCGTTATTCAGCATATTTCTTGGAATGCCACAGATGTGAGGCTTCCAGGGGGGGTTCTACGAAGATTTGTTCTGTGCAGTGTTGATCTTTGTGGCTTTAAATGTTGTGTTGAAACGTGTATCATGTTTCAAACAGTGATATATTGCTTTCTTGGATCAG


gi|35995926|gb|CA276281.1|CA276281 SCEPSD2004D09.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCEPSD2004D09 5', mRNA seque 

CTGCACTGCCTCTTCCCTGGC
||||||||||||| |||| ||
GACGTGACGGAGATGGGAGCG

EST sequence (targeted fragment marked with yellow):
GCTCCTCCCCCTCGACGCCCCCCACCCCCGGCGCCGGCGGCTCGCCCAGCCCCAGCACACCCACCACCCCCAGCGCCCCCGCCCCTGGCACTGGCACTGGCACCCCGGGCAGCGCGTCCGTGCGCCTCACGGCCGGCCCCGCACTCGCCGTGGCCGCCGGCGTGCTTGTCAAGCTCGCCCTCTTCTGATCATGCACCGTACCATCCTGATCTTGCGAGGGTAGAGGCAGTGCAGGATTATTATTCTTGTTGATGAGCTAGCGTTTTCATTCTGACGGCCGGTATGTACGTACGGTAGAGAGCTAGCTACTATACACTGGTTATTATTTGCTGGTTTAATTTCGTGATGTACTACTGTATCATTGATGCATGCTTTCTTTTCTTTAAAAAAAAACAACNATACATCCCACACCAACANACATCATTCCACTCATTTCTTACTAAAACAATAACTAANTGGGGGGGC


gi|36032561|gb|CA286545.1|CA286545 SCBGSD2050G05.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCBGSD2050G05 5', mRNA seque 

CTGCACTGCCTCTTCCCTGGC
||||||||||||| |||| ||
GACGTGACGGAGATGGGAGCG

EST sequence (targeted fragment marked with yellow):
CACCGTACCATCCTGATCTTGCGAGGGTAGAGGCAGTGCAGGATTATTATTCTTGTTGATGAGCTAGCGTTTTCATTCTGACGGCCGGTATGTACCCGCCGTACAGAGATAACCGACCTACTCTGCCCTTCTGCCGGCGATGCGCTCCTGGGCTGAACTGGTCGGTCAGTGACGCATGCTCTCTTTTCTTTATTAGAGTTTGCCTTCGCTTGTGTATCTTCTTCATTCATGGTGTCTTATTATTTCTCTTCTCCATCTATATATATGGACATATTTTTGTATAATATGATGATTTTATTTACTACTGTGATATATATCTATTTNT


gi|35998866|gb|CA277297.1|CA277297 SCACSD2015D09.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCACSD2015D09 5', mRNA seque 

CTGCACTGCCTCTTCCCTGGC
 |||||||||||| |||| ||
AACGTGACGGAGATGGGAGCG

EST sequence (targeted fragment marked with yellow):
TCGACATCGCTAAAGCTACTACCTGTACGTGCTGCCTAGCTCGATCGTACGTGTCGTCCGCGAAGCAAAACAAAGCAGCTCGCCGCTCCAGCTAGCCATGGCGTCCCGTTCCGCTCTGATCGCGCTGCTCGTCGTTGTGAGCTCCGTCGCGGCGGCCTCAGCGGCCACGTTCACCGTCGGCGAGAGTAGCGGGTGGACTACTGGCTACAACTACGACACCTGGGCCAGTGGCAAGACCTTCGCGGCTGGAGACCAACTAGTGTTCAACTTCGCGACCGGTGCCCACGACTTGGTGGTGGTGGACAAGAGCGGATACGACGGCTGCTCCACCAGCAACGCCGCCAACACCATCCCAAACGGCCCGACCACCGTCACCCTCACCGCCGGCACCCACTACTACATCTGCGGCTTCACCGGCCACTGCAGCAACGGCATGAAGCTCACTGTCACCGTCGGCTCCGGNTTCTTCCCCTNGACGCCCCCCACCCCCGGCGCCGGCGGCTCGCCCAGCCCCAGCACACCCACCACCCCCAGCGCCCCCGCCCCTGGCACTGGCACTGGCACCCCGGGCAGCGCGTTCGTGCGCCTCACGGCCGGNCCCGCACTCGGCGTGGCCCGCGGCGTGCTNGTCAAGCTCGCCCTCTTCTGATCATGCACCGTACCATCCTGATCTTGCGAGGGTAGAGGCAGTGCAAGAATATTATTTCTTGTGATGAGCTAGCGTTTTATTCTGACGGCCGTACGTACGTACG