| mature miRNA: GGCGTCGGCGCTGCACGCGGC species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|36038792|gb|CA288632.1|CA288632 SCEQSD2076C10.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCEQSD2076C10 5', mRNA seque GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CAGCCACCACTAGGAACTGCCGAGCGAAGCGAGCGAGCGAGCTTGCTCCGGTGCCGCGGTGCGGCGTGCGCGATAATGGAGGGTGGCGAGAAGTCGGCGGGCGGGGCCCCGGCCTACTGGGGCCTGGGCGCGCTGCCCTGCGACGCGTGCGGCGCCGAGGCGGCGCGCCTCTACTGCCGCGCGGACTCGGCGTTCTTGTGCGCCGGGTGCGACGCGCGGGCGCACGGCGCCGCGTCGCGCCACCCGCGGGTCTGGCTCTGCGAGGTCTGCGAGCACGCGCCGGCGGCGGTCACTTGCCGCGCCGACGTCCGTCGTGCTGTTCGTCTTCTTGCATACGGTCGCTGTATGTCTCAGGATGACGCAACGCTGTATCGTCCTATTTAGTAAACTATCCTACGCCTTTTTGTGAAGGCTCTGTATCTTTTAAGGGACGTCATCTTTTAGCCTTTACGTATAGGTTGCGGGTTATTGCATATAGTTTTGTTATATTTAAATCGTGTACGTTGATGTCTATGGTGTTGTGTTTATGGCGTATGGTTTAGGTTTTTGGTTAAAGCGATAATTTTAAATTGTTTCGGCTTTGGTCTAAGTGTACCGTTTACTACTAAGGTATTTTTATCTCTTATGGTTATGTGTAACGTATTTGTATGCACTATGTGTTAGGTTATGCTTCTGTTAGGGAATCGGCTAAGGTATCTTTGCTTTAGTTTAGGCTATGGGTATGCTATGGTTATTTTTGGTAGGGTAATCTTTTTATGTTAATGTTCTTTTTGTTATGTTTGTTAATTAAGTTAGCTTATTGGTCGTGAATGGGGGTGTTGCTTTTTTAATGTTATGGTGGGTGTTTGATGTG | |||||||||
gi|36042763|gb|CA289814.1|CA289814 SCAGFL8009C10.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCAGFL8009C10 5', mRNA seque GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CGGAGCAGTGCCCGGGGGAGTGCGCGTGGCCGTTCCACCAGCCGTCGGGGGGCCCGCAGGCGGCGCCACTGGTGTCCCCGAACGCGGACGTCGGGATGGACGGCGCGGTGATCACGCTGGCGACACTGCTGGCGGGCGCGGTGACCAACCCGTACGGCGGCGGGTTCTTCCAGGGCCCCGCGGAGGCGCCGCTGGAGGCCGTGTCGGCGTGCGCGGGCGTGTTCGGCGCCGGCGCCTACCCGGGGTACCCGGGCCAGGTGCGCGTGGACGCCGCCACGGGCGCGAGCTACAACGCCGTCGGGGTGGCTGGGCGCCGGTTCCTGCTGCCGGCCATGTGGGACCCCGCGACGGCGCAGTGCTCCACGCCGCTCGTGTAGTCTAGTCGGGTGGGGCGGTGGGAGTGGAATGGAAGTTCCGGCGATGGCCGACTCGAGAGTCTCGAGTCGGTGGTAGTGGTGCACTGGGGTTGCCGTGTTGGTGTCCGGAGCCCGGACTTCGGTTTTTGGTGTCGTGCTCACATTGTACATATGCATTTCGTTCGTGGTCACAACTTGTTAACATTTTTGGAATAACTATCATAATTTCTTACGTTAATACTTAGCTCATTATAATAAATGTTTTAAAGGGGGGGCGGTTAAAAGATCCAAGTTTATTTCCGTGTGTTGGAAGTAATAGTTTTTTTTAAGGN | |||||||||
gi|36050363|gb|CA292223.1|CA292223 SCACFL8021G07.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCACFL8021G07 5', mRNA seque GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CCCCCGCCTCCCGTTCCCAGAGTCCCAATCCGGACTCCCAAGAACCCCGCGCCGCCTCCTCCTCCCCACCTCGCCATGGGCAGCGCCGCCGCCTCGCCGCCGCCGTCGGGGAAGCTGACGCAGGACGAGCTGAAGCGCGTGGCGGCGCACCGCGCGGTGGAGTTCGTGGAGCCCGGCATGACGCTGGGCCTGGGCACGGGGTCCACGGCGGCGCACGCGCTGGACCGCCTGGGCGACCTCCTCCGCGCGGGCGCGCTCCCGGGCGTCGCCGGCGTACCCACCTCCCTCAAGACGGAGGCCCACGCGTCCGCCGTCGGGATCCCGCTGCTCCCGCTCGACGCCGCCTCGGGCGCCAGGATCGCGCTCTCCATCGACGGCGCCGACGAGGTCGACCCGGACCTCAACCTTCGTAAGGGCCGCTGCGGGTCCCTGCTCCCCGAGAAGATGATCGAGGGCGCCCGGGAACGATTCGTTGTCTTCGT | |||||||||
gi|268797874|gb|EC324711.1|EC324711 SUS31-009-D02-A-015.g Sugarcane red rot infected mature stem subtracted cDNA library Sacchar GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): AAAGCCTACACAAGCAACAACACTCACTGCCAGTGCCGGTTGGGGCTTAAAGCACACGGACCTTGACCACGCGATCCACCTTGAAACAAACTTCTTAAAAAGCAAACCAGAACCAAAACACACGCCAACGCTTCTGATGGATCAAGGCCCGGCCAGGACACGTTGCGACCTTAGGAGCTGGTCTTGTGCTCGCCGGCGGCGTCCTTGTGGTCGTCTTCACCTGAGCTCTTATGGTAGCCGGGTATCTTGTCCATGATCTTGCCCAGCAAGCCCTTCTTCTCCTTGCCATCCGGGCTGCTCACGTCCTCAGTGTGCGGCGCCGGCGCCGGCGCGTGGACGACGGCCGGTGCGGCAGCAGCGGAAGCGTCTTCCGGCTTCTTGTGGCCACCGGGGAGCTTCTCCTTGATCTTGTCCAGCAGGCCTTTCTTCTCCTCCTCCGGTGCCGGTGGGGTCTCGATCTTCACGTCGTCC | |||||||||
gi|36018108|gb|CA283538.1|CA283538 SCSBSD1056A01.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCSBSD1056A01 5', mRNA seque GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CTTGAGAGAGAGAGAGAGAAGTGGGAGAGACCTGCGAGAGGCTGCCGTGTAGGGACCGGAGAGTCAGCGACTGCGAAGGAGGGAGAGGGTGATGGCCGGGATCGGGCCGATCAGGCAGGACTGGGAGCCGGTGGTGGTGCGGAAGAAGGCACCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCGCCGGCGCCGAGATCGAGACCATGAAGAAGTACAACGCTGGTACGAACAAGGCGGCGTGCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACTGAAAACCTCGCCCATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGATGACCCANGCACAGCTTGCTCAGATGATCAATGAGAAGCCACAGGTGATCCANGAGTATGAGTCGGGCAAGGCAATCCCCAACCAGCAGATCATTGGCCAGCTCGAGAGGGCCCTGNGGAACGAAGCTGCGTGGCAAAGAAATAGNCGTTCGTACCTGAGTTATGTGTTCCCCCCG | |||||||||
gi|36041086|gb|CA289322.1|CA289322 SCCCFL8003G04.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCCCFL8003G04 5', mRNA seque GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): GCGCCGCGGACGGCGCCGACGACCAGCACGGCGGCGGCGGCAAGCTCAGCATGAAGAACCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCATGGTTCAGCTGCGCCTCCAACCAGGTGGCGCAGGTGCTCCTGACTCTGCCGTACTCCTTCTCCCAGCTGGGGATGCTGTCCGGCATCCTGCTGCAGATCTTCTACGGCTTCTTGGGCAGCTGGACCGCCTACCTCATCAGTGTCCTCTACGTCGAGTACCGCTCCCGCAAGGAAAAGGAAGGCGTCAGCTTCAAGAACCACGTCATCCAGTGGTTCGAAGTGCTGGACGGGCTGCTGGGCCCCTACTGGAAGGCGGCCGGTCTGGCTTTCAACTGCACGTTCCTGCTCTTCGGCTCCGTCATCCAGCTGATCGCCTGCGCGAGCAACATCTACTACATCAACGACCGGCTGGACAAGCGGACATGGACGTACATCTTCGGCGCCTGCTGCGCCACCACGGTGTTCATCCCGTCCTTCCACAACTACCGGATCTGGTCCTTCCTGGGGCTCGGCATGACCACCTACACCGCGTGGTACCTCGCCATCGCCGTGCTCATCAACGGCCAGGTCGAAGGCGTGGCGCACACCGGCCCGACCAAGCTCGTACTCTACTTCACCGGCGCCACCAACATCCTCTACACCTTTCGGCGGCCACGCCGTCACAATCGAGATCATGCACGCGATGTGGAAGCCGG | |||||||||
gi|268782385|gb|DN194834.1|DN194834 SUM01-020F-B01-009.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): AGGCTTCAAGCTCTCCGCTTCCGAGGAGAAGAAGGCCTCCTCCGCGGCCGCCAAGACGAAGAAGAAGGCTGCGTCGGCGCCGACGCTGGCCAAACGCAAGAGGCCCGCGGCGGCCGCCGCCGCGCCGGCCAAAAAGAAGACGGCGCCCGCCGCAGCGGCGCCCAGGGAGGCACGGAAAGCGCGCGCAAAGCGGGCGAGGATGGTGGCCCCGGCGCCCGCGCAGCCCAAGCCCAAGTCAGCCCGCGCCGCCGCCGCCGCCGCTGGCAAGAAGGCCAACAAGGCCAGCGCCTGATAAGCAACCAACCAACCGTCCTTGTCCGCGCGCGCCGCCGCCGTGTACTATGTATTATACTAGCTGGTAGTGGTAGTAGTAGGAAGTACTAGCAGCGTGGCTCTCCCTGTGCTGTCATCGTCGTCTCCGCCGGCTCGATCGATCGGGCGCTCTGCTCCGCCGTGTGTGGCGGGGTGTTGTAAAAATACCCGGACCGTAACCAGTGTCAGTGTGGTGTGATGGCAATAAAGCGCGCGCTTTTAGCTTCCGGTGATGATGATGCTTGGGTTCATCCACTATCAGTGTCTGAATGCGATG | |||||||||
gi|36065521|gb|CA297340.1|CA297340 SCCCNR2003B09.g NR2 Saccharum hybrid cultivar cDNA clone SCCCNR2003B09 5', mRNA sequence GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CAGCATCAGTGCGTCTCTTCCCTGAGAGGCAACCAACCATATAGTACTACCGAGATGGNGCTGCTCTCCTCCGGTGGTCGTTGTTTTCTGANGATCGTGCCGTGCCTCACGGCGGCGGTGGTGGCCGCGCTGGCCGTCACCACCCCGCGCGGCGCCGACGCCTACAAGAACTACACCGTCGGCGACGACAAGGGCTGGTACGACGGCCTCACCCTGGCGGGGGTGGACTACCAGGCGTGGGCCGACGGCAAAAACTTCAGCCTCGGGGATTTTCTCATCTTCAACACGGACAAGAACCACTCGGTGGTGCAGACGCGGAACGGGACGCTGTACAAGAGCTGCGACTACAACGACTCGGGCCCCGACGACACCGTCGAGTGGTCCGCCGCGGCGCCGGAGTTCAGCAAGGACGCTGTCACCGTCGCCGTGCCGCTCCTCAAGGAGGGCCCGCCCTAACTTTTTTCGGCCACTACCAACGGCAACAGTGGGAGAACCGCCCACGCTTTGCCATCGACGTGACCAAGGGCAGGGGCCGCCAACCTGACCTCAGGGCGCCCGTTGCCGACGCCCCGGGGCCCTTCTTACGGGGAAACGGCGACGGAACGGGCC | |||||||||
gi|36008847|gb|CA280696.1|CA280696 SCVPFL1C12H11.g FL1 Saccharum hybrid cultivar (mixed) cDNA clone SCVPFL1C12H11 5', mRNA seque GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): TTCTTCTTGGTCCTCCTCCGCCTCCACTTCGCCTTCCCTGCGTTGCGTCTTGAGAGAGAGAAGTGGGAGAGACCTGCGAGAGGCTGCCGTGTAGGGACCGGAGAGTCAGCGACTGCGAAGGAGGGAGAGGGCGATGGCCGGGATCGGGCCGATCAGGCAGGACTGGGAGCCGGTGGTGGTGCGGAAGAAGGCACCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCGCCGGCGCAGAGATCGAGACCATGAAGAAGTATAACGCTGGTACGAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACTGAAAACCTCGCCCATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGATGACCCAAGCCTAGCTTGCTCAGATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCGGGCAAGGCAATCCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGAAGCTGCGTGGCAAGAAATAGCGTTCGTACTGAGTTATGTGTTCCCGGAGCAGCATAAGGGAAGACAAGGCAAACTGGCTGCTTATCTATACTATACTATAATTNTCGNGGA | |||||||||
gi|35981498|gb|CA271628.1|CA271628 SCBGLB2075F05.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBGLB2075F05 5', mRNA seq GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CCTCCTGCCATTTCAAAACCTCTTCCTCTTCTCCTCTCCTCGCCTCAGCTGGCACCGTTTCCGCAGACGCCTTGTCCCCTGCCCGGGTTACCCTTGCCACCGTGTCGCACGTCCTCTAGCCCCACGCGCCACCGGCATGTCTCCCACCACCACCCCGTCGCCCGCGCCCGTGGCAGCCTCGGGCTCCAAGGGCGCCAAGCGCAGCCTCATGTCCTCGCTCATGGACGCCACCGCGCTGCTCCGCTCCTCCTCCTTCAAGGAGGACTCGTACGTCGCCGCCGCGCTCCCGTCGTCCGAGCTCCGCGCGCTCGCCGACCTCAAGGCGCTGCTCGCCACCCACCCGGACCCCATTTCCATCTGGGGCGTGCCGCTGAACGCCCACTCTACTCCCGCCGTGGCGGACGACGCTGCCCCTGCCCCAACCCCGGCCCCGGTTGACGAGCGCGCCGACGTGGTGCTCCTCAAGTTCCTCCGCGCGCGGGACTTCCGCGTNCGCGACGCGCACGCCATGCTGCTCCGCTGCGCCGACTGGCGCGCCGAGTTCGGCGCCGACGCCGTGCTTGACGAGGACCTGNGCTTCAAGGACCTCGAGGGCGTCGTCGCCTACATGCACGGT | |||||||||
gi|36053133|gb|CA293179.1|CA293179 SCAGFL8041D06.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCAGFL8041D06 5', mRNA seque GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CTCCGCCGCCGGTGGCGCCGGCGCCAGGAAGCTCAAGTGGGGCGCCGCGGTCAAGGGGAAGGGATGTGTCGAGCCCTGGTCCCAGGCCTACACCTGGGAGGAGGACTTCGCCGCCAGCGACAGCGACGACGAAGAGGAGGAGCGCGCGGCCGACAAGAACAAGAACAAGACCAAGACCAAGACCAAGAAGGTCACTGTGAAGAAGGAGAAGAAGGAGGAGGTGAAGGCCGTCAAGAAGGAGAAGAAATGCCCGTTCGCCACCGTCAAGATCGAGGAGATCTCCGATGACAATGATGCTGGATGCGTCGCCATCAAAAAGGTGTTTGCTAAGGGCAACGGCAAGGGAAAGAGGAAGGAGCTCTCCCCACAGGATGCTGCATTGCTCATCCAGATGACCTACAGGGCTCACCTTGCTCACCGCTCCCAGGTGCTTCGCTGCCTGCGCGATCTGGCTGTGGCTAAAGCCAAGCTCAAGGAGCTCAGGTCCCTGTTCTATAACATCTCCTACAGGCACCGGATTGCGCATGACCACGAAGAGCGCCAGAGGTTCTCTGAGAAGATCATCGTACTGCTCATCACCGTAGATGCGCTGGAGGGACCTGACTACATGGTGAGGGACCGCTAGAAATCTATGCTAGAGGAGCTNGAAACAATGCTGGAGGTTGTGGACCCTCAGCCCCCAGGGAAGCAGAAATCACTGAGCCGCAGGAAGTTTGATCTTCCAGAGGGTGGAGCCTTCTCCGATGAAAAA | |||||||||
gi|166791921|gb|DV733364.1|DV733364 SUS01-154-F09-A-077.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA c GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CGTTGCGTCTTGAGAGAGAGAGAGAAGTGGGAGAGACCTGCGAGAGGCTGCCGTGTAGGGACCGGAGAGTCAGCGACTGCGAAGGAGGGAGAGGGCGATGGCCGGGATCGGGCCGATCAGGCAGGACTGGGAGCCGGTGGTGGTGCGGAAGAAGGCACCCACCGCCGCCGCCAAGAAGGATGAGAAGGCCGTCAACGCCGCGCGCCGCGCCGGCGCAGAGATCGAGACCATGAAGAAGTACAACGCTGGTACAAACAAGGCGGCGTCCAGCGGCACATCCCTCAACACCAAGCGCCTCGACGACGACACTGAAAACCTCGCCCATGAGCGAGTTCCAAGTGACCTGAAGAAAAATCTCATGCAAGCAAGGCTCGATAAGAAGATGACCCAGGCAC | |||||||||
gi|36057537|gb|CA294635.1|CA294635 SCSGLV1013A04.b LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCSGLV1013A04 3', mRNA seque GGCGTCGGCGCTGCACGCGGC EST sequence (targeted fragment marked with yellow): CCAACGCACACCCCCGAGAAGCCCGCCCGTGACACCAGCATCCAGCAGGCAGCAGCATCTTTTTCGTGACGCCCGGAGCAGACACCGGAGGCATGGACACCCCGGTGGAGCTGGAGCAGAAGCCGCCGGTGGGCTACTGGAGCGTGGTGGGCGCGCGTCCCTGCGACGCGTGCGCCGCGGAGCCGGCGCGGCTGCACTGCCGCGAGGACGGCGCGTTCCTGTGCCCCGGCTGCGACGACCGGGCGCACGGCGCCGGGTCGCGCCACGCGCGCGTCTGGCTGTGCGAGGTCTGCGAGCACGCCCCCGCCGCCGTCACCTGCCGCGCCGACGCCGCCGCGCTCTGCGCCGCCTGCGACGCCGACATCCACTCGGCCAACCCGCTCGCGCGCCGCCACGAGCGCCTCCCCGTCGCGCCCTTCTTCAGAGCGCTCGCCGACGCGCCGCAGCCCTATCCGTCCCCGGCCTTCGCCACC | |||||||||