| mature miRNA: TCGCGCCGGCGCGCGCGTGGG species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|35981149|gb|CA271516.1|CA271516 SCBGLB2074C09.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBGLB2074C09 5', mRNA seq TCGCGCCGGCGCGCGCGTGGG EST sequence (targeted fragment marked with yellow): CGTCCGGACGATCGCTCGATTCTCGGCCGCTGCTCTCGTTGCGGCAGCCTGCGTGCGGCGAGATGGCCCTGCAGGCCCCGTCGTCTCTCCTGCGCGCGCCGGCGCCGGATCCGGCGCCGACAGTTTCGGTTCTAGTTATCAGCACCAAGCAAGATGTAGTTGCAGGAATCAGATCTGTACTAGAAGATATAAGTGGCAAATGACGATCGGATTACCATGAGGATCGTGAATTAAAGTGAATAATTGAATAAGAAGATGAAAATTTAAATATTATGACTAATTCAATGTAGCTATAATAATTATTAAATAATAGAATTAATAAAAAAAATTAATATTGAACATAAATATAAAAATCATTAATTAATTTTTTGACAGAAATAGTTGAGATTTTTAAATTTAAAAAATTTAAGTAGAATATGATTACATAGTTCAGTATAAATAGTATTAAATACTAGAAATTTCATTTGGATTATCCTTATCACTATAACATGCTTCTATAACACATAAAAGGATTTATTATTAATTTGAAATACACTTAATATTTGAAAAATATACATATTAAATTACTAACATTTAATTTAACTTCTAAAATATTTAGAAAAACTAACACTTAGGTATTAAAGAGTAATTCTAATTATGTAA | |||||||||
gi|36054659|gb|CA293672.1|CA293672 SCSGLV1006B04.b LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCSGLV1006B04 3', mRNA seque TCGCGCCGGCGCGCGCGTGGG EST sequence (targeted fragment marked with yellow): ACATCTACCTGCTGCGGACGCTGTACGTGTTCACGCTGACGCTGCCGTCGGCGGCGGCCATGTACTGGGCGTTCGCCGACGAGCTGCTGACCCACTCGAACGCCTTCTCGCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATCCTGATGCTGATCCACCAGTTCATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGGATGCACGACACCAAGAGCATCTTCAAGCGCGCGCTGGCGCGGCTGCCCATCGTGGTGCCCATCTGGTTCCTGGCCATCATCTTCCCCTTCTTCGGGCCCATCAACTCCGCCGTCGGCGCGCTGCTCGTCAGCTTCACCGTCTACATCATCCCGGCATTGGCGCACATCCTCACCTACCGCACGGCGTCCGCGCGCATGAATGCCGCGGAGAAGCCGCCGTTCTTCCTGCCGAGCTGGACGGGGATGTTCGTCCTCAACATGTTCATCGTGGTGTGGGTGCTGGTGGTGGGCTTCGGGCTCGGCGGCTGGGCCAGCATGGTCAACTTCATCAGGCAGATCGACACGTTCGGACTGTTCGCCAAGTGCTACCAGTGCCCCAAACCGCCCGTCCCGC | |||||||||
gi|36050850|gb|CA292383.1|CA292383 SCACFL8023F02.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCACFL8023F02 5', mRNA seque TCGCGCCGGCGCGCGCGTGGG EST sequence (targeted fragment marked with yellow): ATCCGCAACCTCGGCCATGGAGAGGAGACCAATCCGACGCCCGACATCGTGGCTGCCCAGCTGGCCGCCCTCCGCCGCTCCTCCTCGCCTCCCTCCGCCGACGCCGGCGCAAGATCGCCGCCGGACTCCGCTCTGCTGCTTCGTTCCCGTCCTAATGGGGGGGGGGGGGTCNNNNNNCNNANACNNNNGNCNCNNNNCCNNCCNNCTCCCCCCGCCCCCCCNCCCCCCGCCCGCCCCGCCNGCGCCGCGCGCCGCGCGCGCCGGCGCGCCGCGGCCGGCGCGCGCGCCGGCGCGCCGCGCGCCCCGGCGGCCNCGCCGCCGCGGCCGCCCGCCCGGGCGCCGCCCGCCCACGNGCGCGGCCGGCCGCCCCGGGCGGCGCCGCCCCCGCCCCGCCGGCCCGGCGGCGCCGGCGNCCCGACACCGCGCGGACGCCGAGCACGACACCCCACGCGGGACGGGGAGGCGAGGACGCCGACCG | |||||||||
gi|268782380|gb|DN194829.1|DN194829 SUM01-020F-A06-037.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TCGCGCCGGCGCGCGCGTGGG EST sequence (targeted fragment marked with yellow): ATCAGCTCAAAAAAAAAAAGCAGAGCTCCCTCGGGCTCTCCGTCTCGGCTCTCCTCTGCAAGCGAGAAAGAGCCAGACCCCCGGCCTCGATCCGTCCCGCTCACGCCGACGACGCACCACCGCGAAGCGCGAAACAGCGCCGCTGGTACACATACACACACATGGCCGGCGCCGAGAGCGGCGGCAGTGGCAGCGACCTGGTGCTGCTGGACGTGTTCGGCAGCCCGTACGCGCAGCGCGTGCGCATCGCGCTGGCCGAGAAGGGCCTGGCATACGAGCGCGCCGAGGAGGACCTCGCGGCCAAGAGCGACCTCCTGCGCCGCTCCAACCCGGCGCACGGCGGCAAGGTGCCGGTGCTCCTCCACGCGGGGCGCCCCATCAGCGAGTCCCTCGTCATCCTGGAGTACCTCGACGAGGCCTTCCCGGCGACGCCGCCGCTCCTGCCGGCCGACCCCTACGCGCGCGCGCGGGCGCGGTTCTG | |||||||||
gi|36049929|gb|CA292081.1|CA292081 SCACFL8020B12.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCACFL8020B12 5', mRNA seque TCGCGCCGGCGCGCGCGTGGG EST sequence (targeted fragment marked with yellow): ACGGCGGACGCCCCTGGCGGCGGCGGCGGTCAACGCCCGCCCGCCCTAGGCGCACGTCCAGCCGGAGGATGCGGCCGTCCGCGCGATGCCGCAAGGCTCCTCCACGCCTTCAAAGGGACGTGCCTCCTCTTACTTCTCTCCCGATCTGAAACACCTGTTCTTCTACCTCACACCTCTGAAATCCACAACAAAAATCGACGCGTTCTCTTGGGGCTCAGGCCTCTGGTCGTGCGGTGGTGCCGGCTCTTCTTGCTGGCGCCCGGCGCGACAACTTGGGTCCCTGGTGTGCAGTTCGTCGGTGCCTGTGAGTGGTGGTGGTGTGGATTCGCGTACCTACGCGGGTGCAGACCCGCTCCCCAGCGTGGCGGCGCGGTGGCCCTGGCCCTCGGCCACCGGCGCGGCTGCTCCTTGGTGCGGGATGCGGCCAGCTCCACGGCCCGTGCGCGGCCAGCCCTGGGCGCATGCGACTCCGCCAGCGTGGGCTCGGTGGGACCTCGGCGCATGGNGACTCCACCCGCGCGGCGGCGCGGNGGCCTCCAGGCGCTGGCTCGATGGTCGTGGGCGCAGCCACGGTGGACCCTTCGCACGGCGTCNGATGGACGGCTGGATGAAGCGCTACCTCAAATCTAACGGCAGAGAANAAGGAGGCGACGTGGCCCAACCCCTGCTCAGGAANNTGTCGCAGGTTCGTCTTATAGAGATGGATGCANACGGCGCGGCNGGGGGCAGGCTTTTCCGCGTTCGCAAGT | |||||||||
gi|36073424|gb|CA300014.1|CA300014 SCMCLV1033D01.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCMCLV1033D01 5', mRNA seque TCGCGCCGGCGCGCGCGTGGG EST sequence (targeted fragment marked with yellow): CCAGTCGGGGTGATGCTCTTTAACCACATCAGGCTCTTCGTCTCCCTTCCCCCAACACCACAACCCTCATCCTACGCCGCGCCGGCGTGGTTCCCGGCCCCACGGGTCCGCCACCTCGAGCTCATCATCATGCTCGCCGGCGGCGTCTACGGGTTCGCCACCCAGATGCTCGCCTACTCGCCGATGCCGTTCAACGCCGACGGCTCCATCCCTCCTGAACGCCTGCCGAACCACGAGCACGCCATCATGTACGCCTCGCTCCTCGTCTACACGGGCTCCGCCATCTACCTCGACCGCCGCTCCCTCCACCGCCGCCACCACACGCCGCTCTGCATGCTCCTCCTGGCGGCGCTCTTCGCGCAGGACCTGTTCGTGTTCCACGTGCACTCCACGGACCACGCGGGCATCGAGGGCCGGCTGCACTGGTTCCTGCAGGCCGCCGCGGCGGCGTGCCTCGACACCGCGCTCCTCGGCGCCGNCGCCGGCGGCCTTCCCGCGGAGCTTCAGTTCGCGGTGAGCCTCGTCCGGTCCGCGTCGCTCGCGTTCCAGGGGCTGTGGGGCGTCATCATCGGCGTCACG | |||||||||
gi|35997188|gb|CA276695.1|CA276695 SCRLSD2009C05.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCRLSD2009C05 5', mRNA seque TCGCGCCGGCGCGCGCGTGGG EST sequence (targeted fragment marked with yellow): GATGGAGGTGCTGCCGCCGCCCTACTTCGCGGGGCAGGCGGCGGGCGGCGGGCGGTTCCTGCCGCCGGACCGGCGGGCCGGGCCCGGGGCGTGGACGGTGGAGGAGAACAAGATGTTCGAGCGCGCGCTGGCGCGGGTCGACTCGGACGCGCCGGACCGGTGGGAGCGGGTGGCCCAGATGCTGCCCGGGAGGACCGTGGCCGACGTCGCCGCCCACTACGACGACCTGGAGAGCGATGTCGGCTTCATTGAGGCCGGCTTCGTGCCCTTCCCCCACTACGGCGGCGGCGGCGGCGGCGGCGGCCCGTCGCAATCCGCCGGGTTCACGTTCGACTGGGACGGCAGCGGCGGCGACGCCGGCGCGCTGGGCGCCTTTAAGCGCTCCTGCTACGTGGTTGGTGGCGGCAAGCGCGAGCGCGGGCCGGACCACGAGCGCAAGAAGGGCATCCCCTGGACGGAGGAGGAGCACAAGCTGTTCTTGATGGGTCTGAAGAAGTACGGGCCGCGGGAACTGGCGGGAACATCTCGGGCAAACTTTTTGACGAGCCGGACGCCCACGCAGGTGGCCCGGCACCCGCAGAAGTACTTTATCCGCCTTAAACT | |||||||||