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mature miRNA: TTGACAGAAGATAGAGAGCAC
species: Salvia miltiorrhiza
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|51955213|gb|CV166073.1|CV166073 rsmsxl_006056.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA se 

TTGACAGAAGATAGAGAGCAC
 |||||||||| |||||||||
TACTGTCTTCTCTCTCTCGTG

EST sequence (targeted fragment marked with yellow):
CGGCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGGGAAAGGCTCGTGTCATTCAGCAGCAGCGCGCCACAGATAGTAGCTGGTGGTGGTGTGGTGGGATACCCTAGGTCCGGGGTGGTTGTGAAAGACGAGAATGAAATAGGCGCGTTGCAGCAGCATCAGCAGCTCAACTACATGGACTCAGCAGCATCAGCAGCTCATCATCATCATCATCAACATCAACTCAGCAGCTCCCCAGCCTTTGTTGATCCAAATGTGATGATGGAATGTGATGGTGCTCTCTCTCTTCTGTCATCGCCCCCTCCCGCCATCATCGACTATCATCAAACCACTTCTCCCACCTTGCATTTTCCTCACCAAAATGTTGGATCATCCCATCAAACTCTCTCTTTCATGTGGGACTAGGACTACCTGCC