| mature miRNA: CAACATCATCAAGATTCACAA species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225926470|gb|GO376085.1|GO376085 ctsd3c13 Tomato Seed Library [D] Solanum lycopersicum cDNA clone cTSD-3-C13 5', mRNA sequenc CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): CCACGCGGGCGCGCTCTGACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGTTCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTATCCGTGGATGTCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCATGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCGCATCCAAAGAGATTGATGATTTCATTGATAGGATAGTGGCTGGTATGGAAAGAACAGTCATGACTGATGGCCAAGAGCAAGAGTCTGGTGGGATATCACGAAAGTTGGACATGCCATCTTGTGGAACTCTCACTCCAGGGCATGATGCTTGTACAAAAGGTCACTCCTATCCCACGTGGGTCAAGGCAAAAGGTTTGAACCTGGTTCATTCCCTGCAAAATGAACCCACCTCTTAAATTCCAAGCCAAAAACTTCTTTTGCTTAAAATTGTTTGGGGAAACTTGGTGGAAAAAACCTTCCAAAAAAAATGATTTT | |||||||||
gi|117724066|gb|DB691227.1|DB691227 DB691227 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1041DF0 CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): TAGAAGTAATACTTGTACTTTTCTCAGTGTTCATTCTAAATCCAGCTCTTCAACTAAGCTCAGATTTGCTATATTGTTTTCCCAGGTCCTATTTATACTATTGTGTCTAGAGACCAGTTTAGCAACTTTCTCGGATCATCAATTATTGAGACAAGACTTTGAGAATGAAGACAAGAGTACCATTTCGCATTCTTGTATCCATGATCAGATAATTGAACAAAGGAAAAGACCTGGTTTGCAAGTGTATTCCGTCACTCCTCAGGTGTATGAGGAGTCTGTGGCTTCAGATCCCCCTCACCGTAGAGGAAGGGCATTACTTGAAATTTCCAAAGAACAAAATGATGTCATGCAACCGATCCGAATCTTTTTGAATTATGATGCTGTTGGTCATTCATCTGAGAGAGATTGTCAAAAAGTCGGCGACATTGTGAAGCTTGGGGAGCCACCAGGTGCTTCTTTTTC | |||||||||
gi|16245712|gb|BI931240.1|BI931240 EST551129 tomato flower, 8 mm to preanthesis buds Solanum lycopersicum cDNA clone cTOC19O20 5 CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): GGTGAACATATCAAATTCTTGAAAATGCCAGGAACAATCCAAGTTTCAGTGTTTGATTTCAAGAATATTTCATCATCTTCAATTTGCTTATGGGTTTCCATGGGGAAGCGAGCGTATCAAACGTGGGACAAGGGAGATTTCTCCTTTCCGTTAACCACATTTCGTGATAATTTGGTTGTTAGACTTGAGGATGTTGAAGGAAATGAGTTATCGCGTAAAGAAGTTGAGACCTTATCAATTGTTGAGAAGGGTTGTTGGGATGATGTTT | |||||||||
gi|58244073|gb|BP900602.1|BP900602 BP900602 Lycopersicon esculentum leaf Solanum lycopersicum cDNA clone LA23BD08 5', mRNA seque CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): AGATAGGGGTAAGGTTTGCGTACATACCACCCTCCTCGGACCACACTTGTGGGATTACACTGAGTATGTTGTTGTACTGTAGCATACTATATTGCTTTGTTCATCATACTATCTCAGCTTGCAGTTACGACAAATATCTGCTGGACAAACCGTACTGGATTTAGTGGTAATCGGCTGTGGTCCTGCTGGTCTTGCTCTTGCCGCGGAGTCAGCTAAATTGGGGTTGAACGTGGGGCTCGTTGGGCCTGATCTTCCTTTCACAAACAACTATGGTGTATGGGAGGACGAGTTCAAAGATCTTGGTCTTCAAGCCTGCATTGAACATGTTTGGCGGGATACCATTGTATATCTTGATGATGATGAACCTATTCTTATTGGCCGTGCCTATGGAAGAGTTAGTCGCCATTTTCTGCACGAGGAGTTACTCAAAAGGTGTGTGGAGGCAGGTGTTTTGTATCTAAACTCGAAAGTGGATAGGATTGTTGAGGCCACA | |||||||||
gi|16248231|gb|BI933759.1|BI933759 EST553648 tomato flower, anthesis Solanum lycopersicum cDNA clone cTOD17F16 5' end, mRNA sequ CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): CTTTATCAGGTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAGGAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCATCTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAAATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTAGATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAGAATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATTTCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTCTTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCACTAGCATTTGGGTCAATCAAGGCTAAAGTCCAAATGGAGCCAACACTGGTGTGACATTTGATGATGTTGCTGG | |||||||||
gi|117715349|gb|DB685229.1|DB685229 DB685229 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1022CB0 CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): TTCAACTTCAACAGCAGCAGCAGCTGCAGCTGCTGTCTCTTCTCATTTATCTTTGAATTCCATCTTTGAAACAAAGAATATCTTGGTACCCCATCTTCAATTTACAGGTTTTACTCAAAAACCCCACAAGAAAATATGTCAGCAAAAAGTTCCTTTCTTGGTTTTATCTGTATTAAAGGGTAGTCAATCAAGAACAAAAAGGAGAAGTGATAGTAGTAGTAGTAGTGTTTCAAGAAAAGATAGTAACTTTAAGCTCTTATTGAGTGAAGGGAGGGATAATGATGAGAATTATGGGTGTATATGTCCTGGTTGTGGAATCTTTATGCAGGATGAAGACCCAAATCATCCTGGTTATTACAAGAAAAAAAAGGTGGAAGAAAGTTTAGAGGATTTTGTGGATGATGAGGATGTTGTTGTTGGTGAAGGTGGGGATGATGAAGAAGAGGAGGAATTTGGGGATTTTATTGAGGGGGAGTTGGAAGAAGGTGGAAGTGAAGAAATGGGGTCAGGGAGTGAGGATGGATTTGATGATTGGGATTCCGAGGAATGGGAATTGGGGTTGGAAGAAGCCGAGGGTGATTTGAAAGAGTTAGATGGTTTTTTGCCTGCGGGTGTAGGTTATGGTAACATTACACAGGAGGTTCT | |||||||||
gi|117722834|gb|DB698425.1|DB698425 DB698425 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1063CH0 CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): CTCTAGCAAAAAACACACATCCCAAATTTTCACTTGTAAAAATGGCTAAGGCTATTAAATCATCATCCATTGCTCTTCTCTTCATCACTTTGAACCTTCTCTTCTTCACAATGGTTACTTCAACTTACATCTCATGTCCACCAAAGACTCAACACAAGAATCCTCCATCAACTTACCATAAATGCCCAAAGAACACACTTAAACTAAAGGTGTGTGCCAATTTATTGAATGACTTGGTGCATGTTGTTGTTGGAAGCCCATTATTGTCATCAAAGAGTTCATGTTGTTCTCTTATTGAGAATCTTGCTGATGTTGATGCTGCTGTTTGTCTTTGCACTGCCATTAAAGCTAATGTCTTGGGAGCTCACCTTAATGCTGCTCTTTCACTCAGCTTGTTGCTCAACAACTGTGGAAAGACTGCCCCTAAAGGTTTCAAATGCGCGTAAATTATCAAAACCATCTCTATGTGTTTGTTCATTGTCTACAACTTCTTTTTTTTTTCTCGTTTGGATTTAAGTTATATATACTGACAGTGTAAAGAATTTTTGCACTATCAGTATTATGTATGAGTGTTACATGCATGGTTTGCTTATTTTGTTAGTAAATGTGTGTGGAGTTATTTTACTATTTGGTTTG | |||||||||
gi|58226661|gb|BP883190.1|BP883190 BP883190 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FA25AD11 5', CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): CTTGGAGGCGCATACTATTTTAGAAACAGCAGAGGTGAGAGTGTTGCTATTGTCAAGCCAACAGATGAAGAGCCGTTTGCACCAAATAATCCTAAAGGTTTTGTTGGCAAAGCTCTTGGACAGCCAGGCTTAAAGCGTTCAGTTAGGGTTGGAGAAACAGGGTTTCGGGAGGTTGCTGCATATCTTCTCGATTATGATCATTTTGCCAATGTGCCAGCCACTGCATTGGTAAAAATCACTCATTCTATTTTTAATATCAATGACGGTGTTAATGGAGATAAGCCTTTTAGCAAGAAGAAACTGGTCAGCAAGATCGCATCTTTGCAGCAATTCATCCCTCATGATTTTGATGCCAGTGACCATGGAACATCAAGCTTCCCTGTTGCTGCTGTGCACCGTATTGGGATATTAGACATCAGGATATTTAACACAGACAGGCATGCAGGAAATCTTTTAGTTAGGAAGCTTGATGGTGTTGGGATGTTT | |||||||||
gi|16244933|gb|BI930461.1|BI930461 EST550350 tomato flower, 8 mm to preanthesis buds Solanum lycopersicum cDNA clone cTOC16L15 5 CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): AATGGTTACTGGCGTCTCAGCTACTGTTAGACAGATATTGACGGAAGAAGGCTGGGTTGGATTTACGCGGGGAATGGGTCCTAGAGTACTTCATAGTGCTTGTTTTTCAGCTCTCGGGTACTTTGCATTTGAGACGGCTAGGCTTACAATTTTGGATCAGTATTTGAAGCATAAGGAGCTAGAGACTCTGGTTCCTGAGGAGGATGCAACCCAGGCCAACTAGAATGTATGAGTAATGGTTCTTACATCCAGCTGTTACAACCTTTTGTAAGTGCACTTCTTCCTTATTGTTTACAATCATATCTCTGTAGATTAATGTCTTCACAAGTTGCAACTTTTTGACCTTACAAGTTGGAGAAGAAGAATGTCTCTGGATTTGTTTGCTAATATTATTAGGCAGATATGTGTCGTTGCTCACCTCCTGCTTTTCTCTCTCTTATTCTGTTACTATATTACTACCTTATAGCTTAAATGATTTAAAATGTAGTTTGGTGAGCTCTGGTCGTAAGCAGCACGACTTTTACATATTGAATCTTATGTAATCCATTTATTGCAAAAATCAACTAAACAAAAACAAAACAACTGCTTGTCTTCTAATTATGTATGACACTTACGGTAATAGTCGTGTACTCTTATATATGCTTACCTGAATGCAAATGTGAGAACATCAATCTGCCGTTGGATAATTAATTTGAATTTTGATGAAGTTGTACAA | |||||||||
gi|150435325|gb|ES893918.1|ES893918 LET069_2006-12-08_1/LET069_E01_004_1 Solanum lycopersicum trichomes Solanum lycopersicum cDN CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): TANGGCCGGGGTTCAGTTANGNTCGGAGAAACAGGGTTTCGGGAGGTTGCTGCATATCTTCTCGATTATGATCATTTTGCCAATGTGCCAGCCACTGCATTGGTAAAAATCACTCATTCTATTTTTAATATCAATGACGGTGTTAATGGAGATAAGCCTTTTAGCAAGAAGAAACTCGTCAGCAAGATCGCATCTTTGCAGCAATTCATCCCTCATGATTTTGATGCCAGTGACCATGGAACATCAAGCTTCCCTGTTGCTGCTGTGCACCGTATTGGGATATTAGACATCAGGATATTTAACACAGACAGGCATGCAGGAAATCTTTTAGTTAGGAAGCTTGATGGTGTTGGGATGTTTGGTCAAGTAGAGTTAATTCCCATCGACCATGGCCTCTGTCTACCAGAAACGTTGGAAGACCCGTATTTTGAGTGGATTCATTGGCCTCAGGCATCCATTCCATTTTCAGATGATGAACTCAAGTACATANAGAAACTTGATCCTGTTCGTGACTCTGATATGCTGAAAAGTGGGCTCCCTATGATTCNCGAAGCCNTGCCTTCGCGTCTTGGTCCTGTCCACCATTTTCCTCAAGGANNCTGCTGCTTATGGNNNTTGCCTTGCANANATNGNNNGANA | |||||||||
gi|58214730|gb|BP878207.1|BP878207 BP878207 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FA11AD12 5', CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): TTTTAGTTAGGAAGCTTGATGGTGTTGGGATGTTTGGTCAAGTAGAGTTAATTCCCATTGACCATGGCCTCTGTCTACCAGAAACGTTGGAAGACCCGTATTTTGAGTGGATTCATTGGCCTCAGGCATCCATTCCATTTTCAGATGATGAACTCAAGTACATAGAGAAACTTGATCCTGTTCGTGACTCTGATATGCTGAAAAGTGAGCTCCCTATGATTCGCGAAGCCTGCCTTCGCGTCTTGGTCCTGTCCACCATTTTCCTCAAGGAAGCTGCTGCTTATGGACTTTGCCTTGCAGAGATTGGTGAGATGATGAGCAGGGAATTTCGTCGTGGGGAAGAAGAACCGAGCGAGCTTGAAGTAGTTTGTTTGGAGGCCAGACGGTTGATTGCTGAGAGAGAGATTTTGTCTCCAAAGGCTGAAGTTGATGAGGAGGAGTTCCAATTTGACATAGATTATGAGGAAGCAGGATACGGT | |||||||||
gi|117686867|gb|DB713717.1|DB713717 DB713717 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2014O1 CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): GCGCCTTTTGGGAGCATGTGTCATCAGCCCCCGAAAGAACACACCATATTACAACATTCAAATTTTCTCTCCCATTACATCTTTCATTTTCTGAAAACCCTAGGATCTATACGGCTGAAGCTGCTCTTGCTTGGGAAGCACAGGCAATCATAGGATGAGCACTCAAGACAGGAGGGCTTTTCCGATGAGGTATACAAGGAATCAATCAAGAAGGAAGACGGTACTCGATGTAGATCTCAATGTGCCACCCCCATCTGATAATAGGGATCACGAAGGAACTTCAAGTCGTGTTGTTCCTGGGGATGTGCCACCTGCACAACGAGGTGCTTCTTCGACACCTGCCCCAATTGATGTTGAGGCTCTTGATGATGATGTGATGATAATTTCTTCCCCTAGGGCACTTGCAGAAGCAAACAACAGCAACATGAGGACTCGTGGACAGGTTATTCTTGTTGATGAGGATTCTGAGGATCATCTGCCGATGTTTAACAGGCGCAACATGCGCAGAAGAGTCTCAACCAATCAGTCAACAATAATGGGTGACATCTACATAAACCTAGAAGCAAATAGCAGCTTACAGGCAGTCACTGCACAGAGTGCAATACCACCAAAGCCAATTGAACCTNCNNCACCGNCCAAAGCCAATTCAACCCACATTTAGCTGTCCAGTATGCANGGGAACCTTAGTTGAGGANATGTCAACAAAATGNGGNCACATTTTCTGCAAAGCTTGCATC | |||||||||
gi|225409822|gb|FS183535.1|FS183535 FS183535 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3027C03 CAACATCATCAAGATTCACAA EST sequence (targeted fragment marked with yellow): CCTCCTCCTCTTCATTTGTTTAACACTTTTTTTCATGTCATTTGAATACTCTCNNNNNNNNGGTTTTCTTCATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAATATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTATCCTTGTAAACAAAAAGTCATGGTGGTGATCTTAAGGTAATGTTTTTTCTGCCTTTTGTGATTTTAAGATATTTAATAATTAATGTATAGTTTCAGTATGAGTAATGATATGGATCATCAATAATAGGGAATTATTCAACTATAGCAAGAAATTTCTTGCTATAAAAATGTTCATTGATTAGGTGCATCACATGTAGTAGGTTAATTACTTAGCTATATTTTATTCCNNGTTTTTGTAGTCCACATTTCAATAGACAATTCATTACGTCTATTTATCT | |||||||||