| mature miRNA: CAGAAGATAGAGAGCACATAT species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|16245972|gb|BI931500.1|BI931500 EST551389 tomato flower, 8 mm to preanthesis buds Solanum lycopersicum cDNA clone cTOC20A18 5 CAGAAGATAGAGAGCACATAT EST sequence (targeted fragment marked with yellow): GTTATAAAAAAATAAGATGTAACTAGTCAAGACATTAGTATTATATTTATACAAATCCAAGTTCATGGAACCCCATCTCCCACTTCACACCTTGGGTCAATTGCATTAAGTAAAATTTGAAGGGAGTCCATCCTCTTTCGTAATCACCCATTAAGAACCAGTTGCATCAACTAAAATTTGAAAGTTTTCTTTGTTTTGGGATATGACAAGATCTATGCATTGGCTAGATAGCATCCTTTAATAAGAGTAGTCATTTCCATGGGAATTGAAAAGAAGAGCTGAATCGTTGATTTGTATAGTAGGCGTTCCAGAACTATGGACCTAGCTGGATATCATTTGATTTAAAACCGACTCAAAGTGTATTGTACTGTATTTTCTTTTAATGCATGTGTGAGCTTTCTGTTTTCTGCCGAAGCTTTTACATGTTAAACTTGGCATCCCCTATGAGATTTATTGTCAAATGAAACAAAGTATTATAATAAAGCAAGTGATACTGCTATCTTTTCTACCCATGTTAGACATTTTACATTATATGAAGATGAAAACCAAGGAGAATGAGAAGGGAGTGTGTACCCAGAACCCAAAATCTCTCCTTGCCTTGTTCAGTTAATACTTAATGTCATTCCAGTAGCTTCTTTTTAGGCACAATTTTAGAAATCATTCATCGGTTACGTG | |||||||||
gi|58243104|gb|BP899633.1|BP899633 BP899633 Lycopersicon esculentum leaf Solanum lycopersicum cDNA clone LA20BE01 5', mRNA seque CAGAAGATAGAGAGCACATAT EST sequence (targeted fragment marked with yellow): GTATATATATATATATGCTATCTTTCTTCTGTTGCACCTTCTAACAAACCAAAAACAATTTTTTCTAAATTTTTATGATCAAATTTCTTCTTCTAAAATGGATTGGATCAGAGGTCATACTATAGGCCGCGGCTCCTCTGCTGCTGTCTCCGCGGCTAAATCAATTTTGTCCGGTGAGGTTTTTGCTGTTAAGTCAGTGGAGCTATCAAAGTCACACTTATTGCAAAAGGAACAAAAAATTCTGTGCCCAATTGAGCTCCCCTTATGTAGTTAGGTACATGG | |||||||||
gi|193217508|gb|EY506171.1|EY506171 B10A10 tomato fruit-quality-QTL subtractive selective hybridisation library Solanum lycopers CAGAAGATAGAGAGCACATAT EST sequence (targeted fragment marked with yellow): ACTTATTAGTGGACTCCAGAAGCGATTCTGTCAGCAATGTAGCAGATTTCATCTGTTAGCAGAGTTTGATGATGCTAAGAGGAGTTGCCGAAGGCGTTTGGCAGGTCACAATGAGCGCCGCCGTAAAATTACATATGACTCTCATGGAGAAAATTTGGGCTGAAGAAGCATCAGCATCAATGGCAGCCAAATAACCTACTTTCTGAAGCAACATAAACAAGATGTGGGTTAAGCATGCTCTCTATCTTCTGTCAATTCCCGGATTTCTAAGCAAATTGTTATTTGTGACCTTCAAGTATCTAGCTAATAGT | |||||||||