| mature miRNA: GAATCTTGATGATGCTGCAT species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|261467440|gb|GT166773.1|GT166773 M82T7el_01_J20_T7-ZL LA3475 Type VII trichomes Solanum lycopersicum cDNA, mRNA sequence GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGGGAAACATCAAAAATGAATGCATTTCAGGTGACATCTGTGCCAGTAAATTTTGGGCCTGTTATGTTGCCAGAGAACCCAATAGAAAGTCCAATCCTTAGACAAGGAAATCAAAGTTATTATAATGGATCATCATCAATATTCCTCCGGCCGGCTCCTGTTGTTGTTTCGTTGCCTAATTCATCAAAAACAGCTGACTTTAACTTGAATCAAAGCTCAGCAATAGAGACATCTTCGTTATCGTTGACATTGTCGTTATCACCATCATCATCATCTACTAGACACTCAGGATTCCAAGTGATGTCAAATTTTAAAAATGGAGAGAGCATCATCAGTGTGGCATGACACACAAGAATCTCTATTATTAAATAACTAAAAGCT | |||||||||
gi|16250310|gb|BI935838.1|BI935838 EST555727 tomato flower, anthesis Solanum lycopersicum cDNA clone cTOD24M15 5' end, mRNA sequ GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TTCAAGCTCAAAGCAAGGAAGTCAAGAATTGGGGGATAATAGAGGTCAAAATTCTTCATCAATAATGCAATTGGATATTGATTGGCAGCGCCATGGTTTAAGGCCTGAGGTATATTTACACGATCAATAGCTATATCTTGTTTTCGTTGTGAAATTCAATTTTTACCTCTGATGCAAACATGTTTTAATTTCCAGAAGCAATCTGCCTTAATTGATGCTCGAAGAAGAGAAAACAGGTACAATGAAACAGAAACGTTGCAACTTTTAAGCCAGACGCACTTGCATTCTCCAGCCTCCTTGAAGCATAACAATAATAATAATAGTCAAGTGCAACGGTTTGGCCAATTTATGAGACCTGGTGATCAATCCCATATGATTCAAATGTTTCCACAGCAATTTGGCTCATCAAATTATCAAATTCAATTTCCAAGTGGCAGCAATGGTGGAAGAATTGGAGCTACAAATGTAAGAGATCTATCGCTTGCGGCGACGAGTAATGGTTCTTCACAATGGCAATCCAATTTTCCTCCTCAGATATTTGTAGCTGCTGCAGCATCATCAGGATTCCCTCAGCAGATAGTAAGACCTCAGAATTGGTCCTCAGAAAATGGTTTCCATCATTCACTCATGAGACCTTCTTGACTCATTTAATAACTTGCCATATTTCTATTTGTGTTTTTTTTAAGATAATGTGTAGATTAAAGGGTTGATATTCTTAATACTCCATATATATTACCTAAGGGCTCTTTGGTTTGAAATTAGAAAAGAAAAAAAAAAGGTAGACCAAATGTTTTTGGAAATATGTCTCCCTCGTAATTTTGTCCATACT | |||||||||
gi|225409822|gb|FS183535.1|FS183535 FS183535 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3027C03 GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CCTCCTCCTCTTCATTTGTTTAACACTTTTTTTCATGTCATTTGAATACTCTCNNNNNNNNGGTTTTCTTCATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAATATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTATCCTTGTAAACAAAAAGTCATGGTGGTGATCTTAAGGTAATGTTTTTTCTGCCTTTTGTGATTTTAAGATATTTAATAATTAATGTATAGTTTCAGTATGAGTAATGATATGGATCATCAATAATAGGGAATTATTCAACTATAGCAAGAAATTTCTTGCTATAAAAATGTTCATTGATTAGGTGCATCACATGTAGTAGGTTAATTACTTAGCTATATTTTATTCCNNGTTTTTGTAGTCCACATTTCAATAGACAATTCATTACGTCTATTTATCT | |||||||||
gi|58237439|gb|BP893968.1|BP893968 BP893968 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FB14CA05 5', GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ACTTGTGGAATGGAGCATATTCCAATTTAATTCCCAACTATGAGGAAAGAGTATCCGGGAAGAGAATAGACGTAGGTACCTCCCACGGACACCCAAACTGGGCAATGCAAATGCATAGTCAGGTCGGAACAACGCCATTGTCAATGTTCTCTGCTGCAGCATCATCAGGATTCTCAACTCCGGCTACCACTGCTTCGGCCTCTCAAATGTCTGGTCCCAACAACCCCAACACTCTCAATCTTTCGTTTGCTTCATATTCGTCACCATCAACGAATACAGCTCAATACTATTACCAGATCAGGCCACAACTACCACCTCCATAACATGTATTACTATAAATACATTTACATAGTTAACTCAAAAACTGATTCCATTTGTAAGAATTGTTTGTTATCAATTCATTTACATGTTGATTTTAAGTTACAACTTGTAAGAATTGGAATGTGAAGATTCAAATTTCCATC | |||||||||
gi|16228812|gb|BI924787.1|BI924787 EST544676 tomato flower, buds 0-3 mm Solanum lycopersicum cDNA clone cTOA24O20 5' end, mRNA s GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCACGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAGTTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCATATGTGGAGCATCAAAAAGCTGTAACAATAAGGAATGATGGTAACTTGAAGAAGAGACTCTAGGGATTGAGCCTGATGAAGCTAATCCTGGCAAGTATCTT | |||||||||
gi|16218046|gb|BI922018.1|BI922018 EST541921 tomato callus Solanum lycopersicum cDNA clone cLEC75D24 5' end, mRNA sequence GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CAATCAAATTCGCCGTGAAGCTTTGGAGCTACCACTCGTTGATTTGTCCACAATAATGAAGGCTACCAATAACTTTTCACTTGAGAACAAGATTGGAGCAGGCGGCTTTGGGAAAGTTTTCAAGGGAGTGCTAGAAGAAGGACAGGAAGTAGCTGTCAAGCGGCTCTCTGAAACGTCCAGACAAGGAAACGATGAGTTCAAGAATGAAGTCAGCTGCATCGCGGAACTTCAGCATCGAAATCTTGTGAAGCTTCTTGGATGCTGCATCGAAGAAGAAGAGAAGATACTGGTGTACGAATACATGCCCAACAAAAGCCTGGATTTATTCATCTTCGATCAAAGAAGGAGCACATTACTTGATTGGCCTAAGCGTTTCAACATCATCAACGGGATTGCTCGAGGACTTATGTACCTTCATCAAGATTCTAGGCTAAGAATCATCCACAGAGACCTTAAAGCTAGTAATGTCCTGCTTGATTTTGAAATGAACCCGAAGATATCAGATTTCGGGATGGCCAGAAGTTTTGGAGGGAACGAGACGGGAGACAATACAAATCGAGTGGTTGGAACATACGGTTACATGTCCCCGGAGTATGCAGTCGATGGGATTTTCTCAGTAAAATCAGACGTCTTTAGCTTTGGCGTATTGATACTAGAAATTGTAAGCGGAAAGAAAGACAGAAGATTCATTCATCCAGACCCACATCTCAACCTCATTGGACATGCATGGATGCTACATAGGGAAGGGGAGATCATCGGA | |||||||||
gi|76573143|gb|DV105810.1|DV105810 chiou00109 Subtractive cDNA library of roots under phosphate starvation Solanum lycopersicum GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ACTATGCGATGGATTGACAAAGAAAGGAATTGAATATCTACTCCTTTCAGTGTTCAGCACAACGCGATGTTCCACACTCTCATATTCATCATTGCTATACACCTGTGTAGCGTCACCAAGATTTACAATGTATGCATCAGGAGTAGGTTTAACTCCTATCCATTCTCCATCAGTTTTCCTCTTTATTTCAAGCCCTCCGGTATCATCTTGACACAAAATGGTGAATAAACCAGCATCTTTGTGTCTACCAACTCCTAAAGCCAGATGAGGGACAGGACAAGGAGGATAATGATTTATCCTTCCAAAAACAATTTGGTCTTCAAAGAACTCATTCAGCCTTTTTGCTGGCAAGCTTAAGCTGAGTGATATCAGTTCTGCTAACTTGTTAGCCAACTTTTGCATTTCTTGAATATACTCTGCACACACCTCCCTTAATCCTGGAGGGG | |||||||||
gi|117701383|gb|DB703932.1|DB703932 DB703932 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1081AA0 GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CTAGCCAAAGGAAAAAAGCTGTAACTCTTCTGCTACAAAAGGGAACACCCCATTTCTCTTCGTTCTGTCCCCTCTTCCTCCCTTACCCCACCCCCACCACCATTTCAAACCCCATAGCAAGAAAACCACCATTTTCTTTCTTCTCTTCTAAAAAAGGGGAAGAAAGAAGAAAAAAATAGTGGAATTTTTTGGTTTTCTCAGAGGAGGAAAAAAACAGAGCAAGAAAGATGAGTAGTGAAAAAGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAGGGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGAGTGTGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGACGGC | |||||||||
gi|117687361|gb|DB688173.1|DB688173 DB688173 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1032AG0 GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): AACCTTTTTTTTTCTCATAATTATTGCTTAATCATATGCCAATTAACACTAATTTACTCATAATCCATACCAATTATTCTTCATTCCTTTCCCATTAATTAATAAAACAAACAATTTAATGTGCCTTTGTTTCCCTCAATTCCTGCCCTATATGTTTCATTTCATGTTAACAAATATTACTATTTTTAATCCTATTTTTGTCTTGTTTTTCTTGTTTTTTTACTAAACCCCATTATTCCTTAAACCCATTATATATTCGATTCAAATAATTTTATGATAAATCTATTTATATTATCATATCGATTAACAGTAAAAGAGAGTATGGACATTTATAATGTTTATTTTCTTTCGCTTTCTTTGTGGCTGTTGATGATTACTGATATGATAAATGCACAAGAGATTGCTGAATCGCCGTCTCCACCACCGTATTATAGATCTAGAGGTTCGCCTTTTAGACCGAGCATAGTAATAGTAGTAGCAATACTCACAACTATATTCTCAATCGTGTTTATGTTGTTGTTATACGCGAAGCATTGTAAGAGGGAAGGTGAATTTGGTATAGGATTGACGAATGCAGGTTCATCAAGCTTTCGGAAAAACTCTG | |||||||||
gi|117720785|gb|DB683825.1|DB683825 DB683825 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1018AA1 GAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ACACCCCACCCCACCCCACCACCCTACTCTCCAACCCCATTATCTTCATCATCATCATCAAGATTCCTCTTTCCACTTTCTCCATAATCATCTCTTCAATTTTTTTACAATATATATCTTGTTTAATCTCATTGTTATCTTTTCTTCTGTGCTGTTTATTCGAAACCCCATTTCGTTTTTTCTTCACTTTTCTACTGTTTCGCGTCATAATTTGAGAAAAGGGGCGAAAGGGTGTTGAAATTTTGTTTATTTTCATGAATGGTTTGATTCAAAGTTTGGGAATTTTCGATTTTTGATTTGGGTTTTTTTGGTTTTAGGTGAAAAGTTTGATTTTTTTTGGTTAAAAATGGGTAATATGGGAAGTAGTGGTGTGAACGGCCGGCGACGGAGTAGTAGCCGGAGGAGCCACCCACCGCCGTCTCCACAACCACAACCACCGCAGCCGGAGATAAACGCGAACAGGTATGTGTTTGCGGCGGCGACGCCTTATCCTACTCAATACCCAAACCCTAATGCTCCGCCGTATTATCAATACCCGGGTTACTATCCTCCACCGCCGGCGGCGATGCCGGTGCCGTTACCAGCTTCGTATGATCATCACCATAGGATGGACCCTGGTCATGCTAATTGGGTTAACGGGCGGTACCCGTGTGGACCGATGATGCCTCCACCAGCTCCGTATGTGGAGCA | |||||||||