| mature miRNA: GCTCTCTATGCTTCTGTCATC species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|16222181|gb|BI923246.1|BI923246 EST543150 tomato callus Solanum lycopersicum cDNA clone cLEC79P24 5' end, mRNA sequence GCTCTCTATGCTTCTGTCATC EST sequence (targeted fragment marked with yellow): TGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGACGCAATATGCTTGAAAAAAATTAGCTGATGCTGAAGTTTCCGAGGAGAGCAGACAATTTACTGAAGTACCTTGAGAAAAGGAGACAGATTTATGCGCATTCAAAGGCATAAAATGGGTG | |||||||||
gi|225923635|gb|GO372626.1|GO372626 ctsb2f9 Tomato Seed Library [B] Solanum lycopersicum cDNA clone cTSB-2-F9 5', mRNA sequence GCTCTCTATGCTTCTGTCATC EST sequence (targeted fragment marked with yellow): CCTACGGGGGGGCGCTCTTACAGTGGATCCCCCGGGCTGCAGCAGCATGAGCACTGTCTTCCTGACGATCGCCCGCAGACACCTTCACGCTGGACTGTTTCGGCTTTTTCAGCGTCGCTTCATAATCCTTTTTCGCCGCCGCCATCAGCGTGTTGTAATCCGCCTGCAGGATTTTCCCGTCTTTCAGTGCCTTGTTCAGTTCTTCCTGACGGGCGGTATATTTCTCCAGCGGCGTCTGCAGCCGTTCGTAAGCCTTCTGCGCCTCTTCGGTATATTTGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGCCNGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAAAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTGGGGGGGGGGGGGGGCGCACCCCTCTCCCCCCAGGGGGGGGATATAAAAATTTGTCGGGGGGGCTTTTTAAAAAAAAGNGGGGGTGGATCGTAACCTTTAATGGAGGCGCTTCGATTTCAAAGATATAACGCGTGATAGTTGGCGAAATGTGTGTAGAAAAACAAGGTTACCGATAGGGATTGGTGGCGGGTGATTTGTGCGCCTGAGTCAAAGGTAGAGGGAAACTTTTATGCAAACCTTGAGAATGCGTGGAAGCTTATCGGAATGTATTTGGTGTGCCTAAGGTAGTTACTCTTTCGGGCAAATTCTCGCGGGGCACCCCAGAGTGGATGTTTGTTGAGAATAAGTATCAATATTGAGGAGGGACGTTTACACGGGAGAAAGTATATCCCTTTACAATTAACATGCAGAACTAGCTTTGTGGTTACCACACTTCTGCTAGGCTTGCTATGTTCCCTTTGTGGAGACACTACGCCATCAGTATTTTCTGTGCACCAGACGGCCGAAGATAGAGGCATAGACAGCGGAGACAGGCGGGTATAGATAGGGTGTGATAAAGGGGTAATGTG | |||||||||
gi|50892455|gb|AJ785064.1|AJ785064 AJ785064 Lycopersicon esculentum var. cerasiforme fruit 12 days post anthesis Solanum lycoper GCTCTCTATGCTTCTGTCATC EST sequence (targeted fragment marked with yellow): TTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGNACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGACGCAATATGCT | |||||||||
gi|58256535|gb|BP911199.1|BP911199 BP911199 Lycopersicon esculentum leaf Solanum lycopersicum cDNA clone LC22DE06 5', mRNA seque GCTCTCTATGCTTCTGTCATC EST sequence (targeted fragment marked with yellow): AGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGA | |||||||||