| mature miRNA: TGACAGAAGAGAGTGAGCACA species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|16230613|gb|BI925272.1|BI925272 EST545161 tomato flower, buds 0-3 mm Solanum lycopersicum cDNA clone cTOA26E15 5' end, mRNA s TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): ATTGGACACATCTTCCATTCAGGGGCTATCAGGGATATCAAATTCCAGCAATGCTCTCTCTCTTCTGTCATCTCAATCACAGGGATCGTCAAATCATTCCACTGTTTTTTCCACTTCTCGCCCCCTCATTCAACCAAACAATAATTACAATGTGACTCAAGCATCTAAAAATGTTCTGGGACTTGGTCCTCAGGCTTCGGCAGGTAGAATGTCCAATACATTCAATTCATCTGGGATCAATTCTGCAGAAGGTGGACTGGACCAGATGATATTTCCTAACAACACTTGTGGTATCAATCGTGTCATTCTATCTATCTTTTTAACATAACAATGGAGATTGAATGTATATAGTGGCAGTGTCTCCATCTCTTTCACTGAATTAATGCATATACATATATATGTGTGTGTCTGTGTCTTCATCACCAGAGACTCCATTTCTAAATTTTAACAAAACTCAGCACTTTCTCCTTTCCCCTTCCACCCAATTTGGCAGCTTTCCATTTTGTATTCTTTTAGTATTAGTGTTTGAGTTTGGACCACTTCTTTTTTGCTTTCACCCAACTGTACTACTTTTTTCTTGCTAATACTATCTCTTTGCTTCCACTAAGGAGGCAAGTATTTTACTTGTCTACTCCTCTTCTTCAGTGCTCCTTGATTGCAAACACTTATTATGGGACTTATGAGTTGTCCCTTTTTTTTTCTTTTGTTAAATGACTGGG | |||||||||
gi|58236177|gb|BP892706.1|BP892706 BP892706 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FB10DF11 5', TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GCTTCATTAGAAAACTTATCACGATTTTAAAGCGTGCATCAATCATCGTGTTCATACTCTCTTGTGTCATTTTCGCCAGCGCTCTCACAATGGGGGTGATTGGTATAGAGAAGACCGTTCGTATGATCCACAATCACGAGTTCATGGGGTTCTTGGATTTCTGCAGCAGTCAGTAATTCTGTGTTTCGACTAGAAAACTATTGGTGAACTAGAATATATACATGTAAAGAGCAGCAGCAGCAGAATAAGAGTTGTTGGCCAATGCCTAATTGACCAACCATTTGAAGAAGTACAGTACAGTAGTATATCATCGAAAAACCGGGTAATTTGCTTGTGTGTTAGCTAGCGCTGACACCAACATCATCCATTTTTCTTACAAAGTAAGATGTTAGTGTGACTATTTGTCTGTGAGTTAGCTAGCGCTAACGCCAGCTATAGCCACGTCTATTTTTCCATTTATTTGCTGTTAAAATA | |||||||||
gi|261469319|gb|GT164626.1|GT164626 M82T1_01_K12_T7-ZL LA3475 Type I trichomes Solanum lycopersicum cDNA, mRNA sequence TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): GGGGACTTTCAGTAATTAAAAAAAAAAACAAAAAAACATGGCAAACAATGATGCTGGTGAAGGGGTGGTGATGCAAGTGATGAAGCACTATTGTCAAGTGGAGACATGTGAGGCTAATTTAGATGGTGCTAAGAAGTACCATAAAAGACACAAAGTTTGTCAAGTTCATGCCAAGGCACCTATTGTTTTGCTTGCTGGTTTAAAGCAGAGGTTTTGTCAACAATGCAGCAAGTTCCATGAGCTCTCAAAATTTGATGGCACTAAAAAGAGCTGTCGCCTGCGTTTAGACGGACACAACAAGCGGCGTCGCAAGACACCACTGCCCATTGAGCTGGAAGATAACCAATGCAGGTTGATCAACGGGGAAGCCAGGCCACATATGGACATGACTTTGTCCAGCAGGAACACCATCTACACTGCTGACATCTCTGGATGAAATGCTTACTCTCTTCTGTCAGCCCCCTCGGGGGCATCGTTGTTGGACCTTTCGATTGATGCTTGTACTGAAAGCAGAACTCAAATAATGATTTAGTGGTTATCCTAGC | |||||||||
gi|117704556|gb|DB720234.1|DB720234 DB720234 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2034E0 TGACAGAAGAGAGTGAGCACA EST sequence (targeted fragment marked with yellow): TGGAGGTCGTATTAGGATAGAATATTGTCTTGCCCACCTTTGACATGTGTTTCTTCTTTAACTTTCTTGGAAAGTGTGCACTCTACGTGGATCGTTAGCTCACTCTCTTCTCTCGCACGCAAAACCATATTTTTCAACAATATTTATCTCTCACACAAAAAAATCACTTTACCTTCAAACCCCAAACATGGCGCAAATGAAGCTTCTTCTTCTTCTTCTCCTTGTTGTTCTTCCTTCATTTTCATTAGCGAAGATTTCAGTATTACCTTCGAGGTTCGCAACGAAGCAAGCGGAGAAATTGATTCAGGAGCTCAATTTGTTTCCTAAGGAATCGGATAACATTGTCGATAGGGATCCGTTTCAGACCGACGATGAAGGTTCTAGAATCGTCGAGAAGCGATTCTCATTTCCTAATTTGGCGAATTCTAGTGTTACAATTGAAGATTTGGGGCATCATGCTGGTTATTATAAGATTAAGCATTCTCATGCTGCTAGGTTGTTCTATTTCTTCTTTGAATCACGAGGAAGTAAGGATGACCCTGTTGTCATCTGGTTGAGTGGAGGGCCTGGTTGCAGTAGTGAATTGGCCCTTTTCTATGAAAATGGACCTTTTTTCTATTTCAAAAAATTTGTCTCTTGTGCCGAATGAATATGGGTGGGACAAGGTATCANACCTTATCTATGTAGACCAACCTACAGGTACTGGNTTCAGTTACAGTTCTGANAGACGTGACCTCTGTCACACTGAANCATGCGTNA | |||||||||