| mature miRNA: TGACAGAAGATAGAGAGCAC species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117723008|gb|DB710777.1|DB710777 DB710777 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2006E2 TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTTGTACATTGAAAACTCCACACATAGTAAAAAAAATATATGTAACAAAGTCTTGGCGGAGTTTTCTATAGTTAATAGCTTATGATTTTGTCAACAAGTTTTGATCTTTTCTAAAAAAGCTTTCTTTTTGTGGGATTAACTTTGATAAGGGAATTTGGGGTTTTGGTTTTCTTTGTAAAGATGGCAGTAGTGGGAGATTTAGCTTTGATGGGGACTAAGATTAAGTTAACTGATAAATTTGAGAAAAGGGTATTTGGTGTTCCACTTTCTTCAAGTACAAGATTTAGTTTTTCTCATGTTAAAAACTTGGATGTCAGAAAATTAAGAACTGCAGTCAGAGCAGTGATGCAAGTTGAGAAAATTCAAAGTTCAGGTGAATTGAAAGAAGGGTCTTTAGGCTTTGATGTTGTGTCAGAAAGGGAGCTTAAAGAAAATGGATTTTTGGGGTTAAGGAAGACAAAGCTTGTGTGTACAATTGGACCAGCTTGTTCTTCTATAGATGAGTTGGAGAAATTGGCTATTGCAGGTATGAATGTGGCTAGGCTAAATATGTGTCATAACTCANGGGAGTGGCATCAAGATGTTATTAGAAAGATTAAGAAGTTGAATCAAGAAAAAGGTTATTGTGTATCAGTTATGATTGATACAGAGGGGAATCAAATACAAGTTGACCATGGCTCTTCATCTTCTGTCAAAGCAGANGAGGANTCAATCTGGTACTTTACTACAGANAAGTTTGANNNNTCTCGTCCATTTA | |||||||||
gi|58230656|gb|BP887185.1|BP887185 BP887185 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FA36CD11 5', TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AAGAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGCCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAAT | |||||||||
gi|117712273|gb|DB698662.1|DB698662 DB698662 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1064BF0 TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): AGTTTCATTCTTAGAAGTGTAAAGATCCAATCTTTATTGCTTTTTTGTTCTGTTCAATGCATTTGCTGCTGTTTTTATGTTGATTTTTCCATTTGGGTGTGTTTTATTTTCTGTTAATTTTCATTCTTGATGTAAAAGCTTGTTGTTTGAGTATGGTTTCTTTGTTGAGTTTGGTTTCTTGAAATTTCATTACAAGAACCCCCTTTTTTTGTGTTATTTTTTTAAAACTATAAATGGGTGTATATTGCTTCTGTTTTTCTTCTTTTTTCCCTTTTCCATAATTTTCAGGTTGATTTAAGTTGTGTATCTCGAGTTTTATTTTTGTTTTTGAGGGGATGTGTAGTTGTTCTTGTGTTTTGGGGGCAACTCTTTCTGCCCTTTTTTTGGTTATCTCTATCTATGTAAGAATCTTTTTGGTCCTTGAAAAGAAACAGTTCAAGAATGTTCAATTGGCTGAAATGAATTTATAGATTCGCAAAAGAACCAAATTCTTATTGGCGGTTTTTTGAGGGGGGATAGTGTTTTGTCTTTGTTCCTTTTGAGTGGTTTGGGTTGAGCTTAAATGAAGTAATGAGTGTTCGTATAGCTGATCCTAACTTGTTTGAGCC | |||||||||
gi|117692102|gb|DB687097.1|DB687097 DB687097 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1028AE1 TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCAATCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCCAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTAATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCCATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAAATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAA | |||||||||
gi|193219368|gb|EY505933.1|EY505933 B7A04 tomato fruit-quality-QTL subtractive selective hybridisation library Solanum lycopersi TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): ACATATATGTAATACACTCTTCAAACATAATTTAACTAATTTCACACACTAGCTAACTAGTTAAAACTAGCTAGCTAATATAACACAAACACACATATATATTATTATATGATATATGTATGTGTGTAAATACACACATTTTGTTTTTCATAATTATTACTTGAGAAGGTGATTCTCTATATCTTTTGTCACACCAATGAGAAACCCAATAGAGCAAGAGGTTCCGGAGTTTCTTCAGTTTTCTTTTTGTACAGAAATGTCCATGTAGCCCATTGCTGATCACTTGACGAAATAAAAGTGAACGAATCATACAGCTCTAACATATCTCCGCCAATTATTTTCGAAGTGATTGATTTACTTTCAGGATCAATGGCTTCAAACACTTCCTCTACAATCTTATCTTTTCCATCATCGTTATATTTCCACCTAATAACTGAACCAACCTTTATGATTTCGCCTTCGATAAACTCAAAACTCAGTATCTTGCTAGGTGTTATGTTGGGTATAAGATGAGGTTTGGTGTATAAATAATCATACATTAAGTGTCCTCCACAATTTATTTCTATAGAAGCACTCAACTTACCTTTCAAGCCCATTTTTTAGATATG | |||||||||
gi|116646105|gb|DV104209.2|DV104209 charng00612 Tomato shoot subtractive cDNA library for heat-shock up-regulated genes Solanum TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCATTCTGAATAAATTATTCATACATATCAAATGAACCTTTTAATACAAATACAAACTCTTGGACCAAAATCACAAACTCTAACTTTAATCAAGCTCAAGTTTTTGTTTTTATTTTTTCAACTACAAAATGAAATCATAAATGTTCTATGGAACCAAAACCTGGAAGCAGAATTGGAACTCTGCCTCTATTGAGGTTTGATCTTTAATCAAGATCAAGTTTCTTTTTCAACTCCAATATGAAGTCATAAACTTTGTACTGATCAGGTAAAGAAGTTGAAACACTTTCCCTTTCCATGCATCTTTTAGCCCATTCAACAAGTTTAGGACATTCATGAATCATACTAAAGTTTCCACAAGTTTCTAATGCATAAAACCAACTATAAAAAGGTATAAGAGCAATGTCAACTAAACCAAATTGATCTCCTCCAAAGAAAGTCTTGTCACCTAACTCTTTTTCCAATAGTTTAAAGTGATGTATTAGTTCTTTTTTTGCTGCCTCTTGAGCTTCACCTTTTGTTGTCCATACCAATCTCCCTGTACTATATATCTTTTGTCAACATAATCAGCCCAAAATTTAGCATGGGCTCTTTCATAAGGATCAGAAGGTAAGAGTGGAGCTTTGTCCTTCCAAACTTCATCAATGTACTGAACAATGATGAGGGATTCACAAATAGGCTTTCCATTGTGAATTAAAACTGGGATTTGCTTATGGATAGGGGTCATTTTTAAGAGCAATGAGCTCTTGTTGCTCAAATTTTCTT | |||||||||
gi|225922868|gb|GO372254.1|GO372254 ctsb1c7 Tomato Seed Library [B] Solanum lycopersicum cDNA clone cTSB-1-C7 5', mRNA sequence TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTTGCCCGCGGGGCGCGCTCTATACTGTGGATCCCCCGGGCTGCAGGAATTATAGAATATGGAAACTTTATTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTCGGGGGCCCCCGGCCCCCTTTCCCCCTTTTGGGGGCCTTTTTTTTTTTTCGGGGCCCTTTTTTTTAAAAAANTTTTTAAAAAANNNNNNNGNGNNGCGCCCGCTGCCCTGTTTTATTTTTAAAATTCTTGTTTCGCTTTCCTCTGTTGTTACTCCTGCCCCTTGGGGGCTGCATTCTTTTTGCGGATTCTTCTCTCTTATTCTTCGTCTTTTACTGTCTCTCCGGTCTATTTTGCTTGTCTGCCTTGTTTGGATTCTCCTCGCTCGCTCGTGTCTCTTTTTGGTGTTCCATCACTGTCGCTTGTCCACATCAATGTCGTTGTTTTTCCCTGCTATGCTTGGTCTTTCGCCTCTGTTTTCGTCCTCGTTCTTCTCGTTTTTTCTTGATTTTGCTCTCCTTGCATCTTTCTTTGTTTCTTTTGTCCCTCCGGCACTGTTACTCTTGTCTATTATTTCAGTTTTTCTCTTTTTTTTTTCGCTGGGCCCTTCATGGTCTTCCTCTGTCTCTTCCTGTTTTTTCTTGATTGCCTTTTCTTCTCTTTATCTTCTGTTACTATGTTTTTCTTTTTCTTTTTGGATTGTCTATCTTTTTTCTCTTTTTTTTTAATTTTTCTTTCCGCCTTTTGTGTTTGTACGCAGCTTGCCCTTCGTGCTCCTTGCTTCTTTTCTTTTATTCTCTTTTTTTTTTTCTACGTAGTTTCTTGGTTCTCTTCTCTTCCTCTCGTCTCTGTCTCTTCTTCCCTTTTTTTGTTCCTTTTCCTTCCCTCTTCTTTGTTTTTTCTTCCTTGCCCTTTCTTTCTTTTCTGTGGTCCTCTTCCGTTTTGTCTGTGTTTCCGTCGCTCTTTCCGGTCTTCTTTTCTTCCCAGTCTCTGTCCGTTTTTGTTCTTCTTTCTTTCTTCTTCTGCTTTTTTCCTTTTCATCTTTCTTTCTTTTTTTGACTGGCGTGTCTTTTGCTTGCTGCTCTTTCTTGTCCTTCTGTTTTCGTCCCGCTTTTCTGTTGGTTTTGTGCCTCCGCCTTGTCTCTTATTCCTGTTGTATTGCTTTTTGTTGTCTGATGCTTCTGTTCCTTTTCTCGCTTCTCCTTGGCTTGTCCGTTCTTCATCACTGTGTTT | |||||||||
gi|117720314|gb|DB721740.1|DB721740 DB721740 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2038K2 TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TCTAGTTGCAGAAAAGAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGNNATCCTTTTGATGTGTTTGANGGTGGCTCATTNGGGCTATTGNNAANAGAAAAATGA | |||||||||
gi|117708919|gb|DB709126.1|DB709126 DB709126 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2001BF TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): CGTCCAACGATCGGAGAGTACACGCTGACGTGTAAGCTCGGCGGTGGCTCATCGTCGACGGTATGGAAAGCCGAGCACCGGACCACCGGAAAAGTGGTGGCGTTGAAGCAAATCGACCTCCTCAAGCTCACTCGCCAACTCAAGAGTTGTTTGGACTGTGGACTCAGCTTTTTATCTTCTGTTAAACACCCAAATATCATTCGCCTTTTCGATGTATTTCAGGCTGAAAACTCTATTTTCCTTGTCTTGGAGTTTTGTGATGGAGGGGATCTGGCTGCTTATATTCGGGATCATGGCAGAGTTCAAGAATGCGTAGCTAGAAAATTTATGAAACAGATAGGTGCTGGTCTAGAGGTACTGAGCATGCACCATATCATTCACCGTGACTTGAAGCCAGAGAACATTCTTTTATCTACCATGGAGACTGACCCAATTCTTAAGATTGCTGATTTTGGTTTCTCAAGACTGTTAAATCCAAATGACCTTGCAGAAACAGTTTGTGGGTCCCCTTTTTACATGGC | |||||||||
gi|58215123|gb|BP878600.1|BP878600 BP878600 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FA12BB01 5', TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTGGATGTCAGAAAATTAAGAACTGCAGTCAGAGCAGTGATGCAAGTTGAGAAAATTCAAAGTTCAGGTGAATTGAAAGAAGGGTCTTTAGGCTTTGATGTTGTGTCAGAAAGGGAGCTTAAAGAAAATGGATTTTTGGGGTTAAGGAAGACAAAGCTTGTGTGTACAATTGGACCAGCTTGTTCTTCTATAGATGAGTTGGAGAAATTGGCTATTGCAGGTATGAATGTGGCTAGGCTAAATATGTGTCATAACTCAAGGGAGTGGCATCAAGATGTTATTAGAAAGATTAAGAAGTTGAATCAAGAAAAAGGTTATTGTGTATCAGTTATGATTGATACAGAGGGGAATCAAATACAAGTTGACCATGGCTCTTCATCTTCTGTCAAAGCAGAGGAGGATTCAATCTGGTACTTTACTACAGAGAAGTTTGAAGGTTCTCGTCCATTTACAATTCAAGCAAATTATGAAGGTTTTTCTGAAGGTG | |||||||||
gi|193217508|gb|EY506171.1|EY506171 B10A10 tomato fruit-quality-QTL subtractive selective hybridisation library Solanum lycopers TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): ACTTATTAGTGGACTCCAGAAGCGATTCTGTCAGCAATGTAGCAGATTTCATCTGTTAGCAGAGTTTGATGATGCTAAGAGGAGTTGCCGAAGGCGTTTGGCAGGTCACAATGAGCGCCGCCGTAAAATTACATATGACTCTCATGGAGAAAATTTGGGCTGAAGAAGCATCAGCATCAATGGCAGCCAAATAACCTACTTTCTGAAGCAACATAAACAAGATGTGGGTTAAGCATGCTCTCTATCTTCTGTCAATTCCCGGATTTCTAAGCAAATTGTTATTTGTGACCTTCAAGTATCTAGCTAATAGT | |||||||||
gi|117722589|gb|DB691440.1|DB691440 DB691440 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1042CB0 TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTTACGTAAAAATATAAAATGAATCAAAATATCTTTACGAGAACTAACGAGGAGCTTCCTAATATAATTTCCCAACGGAAAAGCGCAGTGAGAATATATACAAATGGAAGCTGATCGTCCAACGATCGGAGAGTACACGCTGACGTGTAAGCTCGGCGGTGGCTCATCGTCGACGGTATGGAAAGCCGAGCACCGGACCACCGGAAAAGTGGTGGCGTTGAAGCAAATCGACCTCCTCAAGCTCACTCGCCAACTCAAGAGTTGTTTGGACTGTGAACTCAGCTTTTTATCTTCTGTTAAACACCCAAATATCATTCGCCTTTTCGATGTATTTCAGGCTGAAAACTCTATTTTCCTTGTCTTGGAGTTTTGTGATGGAGGGGATCTGGCTGCTTATATTCGGGATCATGGCAGAGTTCAAGAATGCGTAGCTAGAAAATTTATGAAACAGATAGGTGCTGGTCTAGAGGTACTGAGCATGCACCATATCATTCACCGTGACTTGAAGCCAGAGAACATTCTTTTATCTACCATGGAGACTGACCCAATTCTTAAGATTGCTGATTTTGGTTTCTCAAGACTGTTAAATCCAAATGACCTTGCAGAAACAGTTTGTGGGTCCCCTTTTTACATGGCT | |||||||||
gi|225401228|gb|FS181978.1|FS181978 FS181978 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3014G13 TGACAGAAGATAGAGAGCAC EST sequence (targeted fragment marked with yellow): GATGGTTTTTATCTTCTGTCAGAGCAAGTGATTCCGGCACCCTCACAGATCTGTCAGCCGTCGCCGAACGCTCAGAGATCTGTGAAGATGTACACATCAAAGCAAAAGATTCACAAAGACAAAGATGCTGAACCATCTGAGTTTGAGGTGTCTGTTGGACAGGCTTTGTTTGATTTGGAAAACACCAACCAAGAGCTGAAAAGTGAATTGAAGGATCTGTACATCAATTCAGCAGTTCAAATTGATGTGTCAGGAAATAGGAAAGCTGTTGTTATTCACGTTCCTTACAGACTGAGGAAAGCTTTCCGCAAGGTCCATGTCAGGCTTGTTAGGGAGCTCGAGAAGAAATTCAGTGGAAAGGATGTGATCTTCATTGCCACCAGGAGGATAGTGAGGCCCCCAAAGAGAGGCTCTGCTGCTCAGCGACCCCGCACCAGGACCCTTACTTCTGTCCATGATGCCATGTTGGAGGATTTGGTTGTCCCTGCAGAGATTGTTGGGAAGCGAACTAGATATCGCGTTGATCGATC | |||||||||