| mature miRNA: TTTGGATTGAAGGGAGCTCTA species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225925248|gb|GO374642.1|GO374642 ctsc3o14 Tomato Seed Library [C] Solanum lycopersicum cDNA clone cTSC-3-O14 5', mRNA sequenc TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GCGGGCGGCACTATGACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGAAGTGATAAATGTCCTAAATTGTGGAGTTGTGAGTACAGTCCTGAAAGAGAAAGCAAACAGGGAAATCGTCATGGTGTTGTTTTCGGGGCTAATGTAGATTTGCCAAATGAACTGCATAACCCCATTTTACCTCTACCCAGTGTGCTGCAAAGATCACAACAATATCAGCAACCTTCTTGTTCTTCATCAATGATGAATATCTCATCAGGGATTTCATCATCATCTGTACTAAATTATCAGATGGAGCCCCCTTCAAACCAAAATTATTATTCGTGTAATTATTTACCTCTGTGGCCTGAAGATGTGAAGATGGTTGGCATGAAGAGACCATATCCCTTCACTCCAGAGTTTCCACCAGTCCCTACATTTCACTGCAAATTTCCTCCAGCCTATGTTAACCTTGCATCGAGATCACCTGAATCAGCTTCCTGCAGCAATGAATGTGCAGCCAGTTTAGAATCAGGAAATTTGCTCAAAAGAGAAGCTCCTTCAGGATCAAGGACTCTATCCGAGTCCAAACCAAGGGATGTTATCAGGCAAAATAAAGCTCTCAATGGAGATTTTCTCACGTTGGCTCCTCCTACAGCCGCTTCTCCATATCAGCATTCATCTAATTCAAACCTTCAGAGTCTAGAGAGATTTAGATTGGAATCAGTGACTTGTCAAGAAGTTGCTGAAGAACCTACTACAACAAGCTCAGCCCTAAGCAAAATCAGTTCAACAATCCAATCTATGGATTCTTCCCAACTGCCAAGGTACAAATCAGCCAAGAAGGAACAAACAAACCCAATTGCCATGTTTAAATAAGGAGGAAACTTTGTATCTCAATCCGAAGCTGTAAAAAGTTATCATTACCCATGGTTGTGCTTCTTTCCGGGAAAAATTTCTGCTCTTCCTAAGAAGACCTAATTCAAGTCCTAAAGGGGTTAATTTTTGCAGGGCCTTCTATTCCACTCCGGGGGAAAAAACAACTTTTCCTTCGAAAGAAAGCCCTTACCCCCCAGGTAAAAAATGCCCCCAAACCAAAAGGTTGGAATTAACCTCCGGAACTTCGGCCCCTTGGTGGGGTGAAAAAAAGAAAATTTTCAATTGGAAATTTTCACACTAGAAAGTCCGGGATTTCCGGGTCTCTTCGGAGCTCTTAAATTTGGGAAAACGGGTTCCCTCCTTTGCGGGAG | |||||||||
gi|117710727|gb|DB715244.1|DB715244 DB715244 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2019J0 TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCANAGGAAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGATTCACCTTCAACGCCACCNGGNNACCCGAAAGGNATTACTTANNAAAGAGC | |||||||||
gi|58249470|gb|BP905999.1|BP905999 BP905999 Lycopersicon esculentum leaf Solanum lycopersicum cDNA clone LC02AH04 5', mRNA seque TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TCACCATTTTCTCCCCTATTGTCCACTAAGCTTTGCTTTAATTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTACAACAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCACATTCCTAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACCAGAGATCTCACAGATCGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCGCAGGAAGGAAGCTCACCAGCTAATAATGAGAGCACCACGAAATCAAACGATTCGTTCAAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGATTCACCTTTAACGCCACCT | |||||||||
gi|225395329|gb|FS180958.1|FS180958 FS180958 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3011C23 TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGATTTCCATAGTTACAATCATCACTATCATAATTTTCTCCATGTTTAGTTCATCCAACACAGTNNNAATGCCTATGGTTCCAAGATTCATTCATACACAAAATCGTCTCAAAGATCTTCTCTTAATCTTCTCCACACTTGTTATCTTCTACCTCATCTTCCTTCTTCATCACATCCAGACCCCCAAAACTTCCTTCAATCCAAATCCCAATTTCTCCAAAACCCTTTCAACTTCCACTAATCTTTCAATCTCACACCTCTTCTTCTCAATTGCCGCTTCTTCTTCCTCTTTCTCTAACCGTCTCTCTTACATTAACCTCTGGTACAAACCCAATTCCACAAACGCCGTCGTTTTCCTTGACGACCCGATTTCCATTTCTACCCTCTCTGTTTCATCACCCCCAATTCTTGTTTCATCGGATACTTCTAAGTTTCCTTATTCATTCCCGGCGGGCCGTCGTTCGGCGATTCGGATTGCTCGTATTGTTAAAGATACTTTTGATTTGGTTAAAAATGTGAACTTTAATGATACCCGTTGGTTTGTTTTTGGGGATGATGATACTGTTTTCTTTACGGATAATTT | |||||||||
gi|117710304|gb|DB726225.1|DB726225 DB726225 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2051L2 TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GCAATTCTTGCCATTGCTTCATCATTTCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCANAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGCAAAATCTGAAGTTGAANAANCTAATAATGCTGCACCTAAANAAAACTCCAAGATTCNCNTTCAACGCCNCCNGGATACCCGAAAGGCNTNCTTNNNAAGAGC | |||||||||
gi|117699361|gb|DB707891.1|DB707891 DB707891 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1095DE1 TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TCTTGCTGGCAATTTTTCTTCCATTTACAGTTCAACAAAAAGATTTCTCAAATGTCACGTTCTTGAACATGTCTTTGTTCTTTACAACCATTTCTTTTGCTATTTGAGTTTCATTTTTTCACCATTTTCTCCCCTTTGTCCACTAAGCTTTGCTTTAGTTAAACATGGATTCCAAGACCCTTCTTGATTATGCACTGTTTCAGCTCACCCCAACTAGAACAAGATGTGATCTTGTGGTGTTTTCTGGGGGTAAAAATGAGAAATTGGCATCTGGGTTGGTGGAACCATTCATTTCTCACTTGAAATTTGCTAAAGATCAGATTCCAAAAGGTGGGTATTCAATCACTATGAGGCCACCTTCAACTCATGCCTACTGGTTCACCAAAGCCACATTCCTAAGATTTGTACGCTTTGTTAGTACACCTGAAATTCTTGAGAGGTTTATGCGATTGGAACGAGAGATCTCACAGATCGAGAGTTCCATTCAATCCAATGAATGCTCCAATGGCAATTCAGAGGAAGGAAGCTCACCAGCTAATAGTGAGAGCACCAGGAAATCAAACGATTCGTTCAAGGCAAAATCTGAAGTTGAAGAAGCTAATAATGCTGCACCTAAAGAAAACTCCAAGATTCACCTTCAAC | |||||||||