| mature miRNA: CACCAAAGGCCTCTGCCCTTC species: Solanum melongena database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|261719279|gb|FS065641.1|FS065641 FS065641 library SHT Solanum melongena cDNA clone SHT05F10 3', mRNA sequence CACCAAAGGCCTCTGCCCTTC EST sequence (targeted fragment marked with yellow): CTATCCAAGGGATGGAAGGGCAGAGGCCTTTGGTGTCCCTCCAGCCAAGAATTGGGGTTTCACAATCACTAGCCAATATGCTTTTCTTTCATGCCTTTTTTCGTTCATGGTTCGATATTTTGGTGTCCTAGGCGTAGAGGAACCCCCCCAATCCATCCCGAACTTGGTGGTTAAACTTTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTTGACGCCAGGATGATAAAAAGCTTAACCC | |||||||||
gi|261695551|gb|FS014169.1|FS014169 FS014169 library CHX Solanum melongena cDNA clone CHX05F01 3', mRNA sequence CACCAAAGGCCTCTGCCCTTC EST sequence (targeted fragment marked with yellow): ATCATTACGATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCTGATCAATTCGATCAGGCACTCGCCATCTATTTCCATTGTTCAAATCTTTGACAACACGAAAAAACCATTGTTCAACTCTTTGACAACATGAAAAACCAAAAGCTCTGCCCTCCCTCTCTATCTATCCAAGGGATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGCCAAGAATTGGGGTCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTCATTCTTATTACTTTTTCAATATGAAAACG | |||||||||
gi|261719278|gb|FS065640.1|FS065640 FS065640 library SHT Solanum melongena cDNA clone SHT05F10 5', mRNA sequence CACCAAAGGCCTCTGCCCTTC EST sequence (targeted fragment marked with yellow): CAGAAGTTTTTTTGAGAATTCAAGAGAAGGTCACGGCGAGACGAGCCGTTTATCATTACGATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCTGATCAATTCGATCAGGCACTCGCCATCTATTTTCATTGTTCAAATCTTTGACAACACGAAAAAACCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGCCCTCCCTCTCTATCTATCCAAGGGATGGAAGGGCAGAGGCCTTTGGTGTCCCTCCAGCCAAGAATTGGGGTCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTCATTCTTATTACTTTTTCAATATGAA | |||||||||