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mature miRNA: TGACAGAAGAGAGTGAGCACA
species: Solanum melongena
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|261726709|gb|FS082194.1|FS082194 FS082194 library SmFL Solanum melongena cDNA clone SmFL23L18 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTGC

EST sequence (targeted fragment marked with yellow):
CACAAATGGGAAGTCACTACTGGAAGGGATCCAGTTTTCACGGCCCATGGGTGCGCAGAGTAATGCATCTAGCTTGCTCTTTCCCTCCAAGGGCACCACAGCCGAGGTTTTCCATCGAGGTTCCAAGGAATCCACGTTCAATATGGTTACAGGACCGGAATTTCCTCGTGCTCTCTCTCTTCTGTCAACTAATTTCTGGGGTTCATCTGAGCCTGAGACTGTTTCACTCAACCATGCCAATCATTCCAGCATTCCTGAGCAGATGATGCAGGCAATTCCACAGGGTGTGCCGCATTTGTCCAGTCAATATTGGCAGGCTGGACAACATTCATCCGATCCTCGTTACCATATATTGCCTGCTAATAGTCACAGTGGTGGTAGCTTTCAAGAAATGGGACTGTTCAAAGCTCCATTCGACACAGACTATTATCTCAATGCATTGAACTCCAACATCTGATGTCCTATTGTGTATTTTCAGGATCCTATTTTGCCTGCTGACATGTCAAATCTTGGATCAAGCAAAAGGTCTGTTAGTAGGATGCTTCAAAAGCAATTTGTTTGACTACTTAAATTAGTGCTGGTATATAATATATAGATTGGGCTTTTGAACTCGTAAGAAAGTCTAATATTATGAATTATGCAG


gi|261706081|gb|FS039084.1|FS039084 FS039084 library PER Solanum melongena cDNA clone PER03G16 5', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
|| |||||||||| ||||||
ACCGTCTTCTCTCTCTCGTGG

EST sequence (targeted fragment marked with yellow):
AATCTTTCTCCATCAATTTTCGAAAACAATAGCAGCAGATCCGGAAGCTTTCTGGTAGACTTCAGCTCACACCAAAATGTCAATGAGAGTTCGTGGCCAAATACTAGAGCATCTGAACAAGGATGGGATCATCAGTCTACTGCATCAGGGAAGTTCCTTCAACGTCCTTGGCTGAATAACTCTGAAAATGCTGCTAGTGACCTTGTTTTGCAAGGTTCATCTAGCAGGACCAGTTATCCTGGTGTTCCTTCACGAGACTATATTCCTGCAGTCTCAGATTCAAGCGGTGCTCTCTCTCTTCTGCCAAATCGGTCCTGGGGATCAAGGAATCGACCCTCAAGTCTTGAGGCTAACAGCCAAGTTCACATTGATGGGGTACACACCATTCAACCTTCAGGTTCCCATGGTGCACCTACCAATCACTTCTCAAGTCCTTCA


gi|261692721|gb|FS013013.1|FS013013 FS013013 library CHX Solanum melongena cDNA clone CHX03H08 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
 ||||.||||| |||| ||||
CCTGTTTTCTCCCACTAGTGT

EST sequence (targeted fragment marked with yellow):
TCAGGGGCAGGCACACATGGCTCTTAATGACATAGATGCTGCAGTAGATAGTTTCAAGAAAGCATTGGAGCTGGAGCCAAATGATGGAGGAATCAAAAACCAGCTTGCTGCTGCTAAAAAGAAGATTGCTGATAGACGTGAGAAGGAGAGAAAAGCATTTTCCAGGATGTTCCAAAGAAATCGGTAAAAGTTAGCACACTAGACCTGTAAGTAACTGGAGATCCTTGTGGAGTGGTATTTTTCTATTCACATTGTAAGTTGGCATTTAGAGATCATTTCCTCATGCCTGACCTTACGCTTCGAGTGTTGAAATTTGAAAGATGGGACTCAAAATGCATAGCGATTTGCTGTCTCTCTATATCTTTCGACAATACTTCTATGTATTGTGAGTCTCAACTTTCTTGTCCCTTGCATTCGAAAGGTTAGAGGGAAACAAAAGAGCTGTTGTGTATACTTTAACTTCCTTATTGTGATCACCCTCTTTTGTCCATGAAGACATGGATTTTACC


gi|261691151|gb|FS019088.1|FS019088 FS019088 library LS0 Solanum melongena cDNA clone LS003E08 3', mRNA sequence 

TGACAGAAGAGAGTGAGCACA
 ||||.||||| |||| ||||
CCTGTTTTCTCCCACTAGTGT

EST sequence (targeted fragment marked with yellow):
GCGGGATGGAGAAAACAATGCAAAAGCTCTCTTTCGTCAGGGGCAGGCACACATGGCTCTTAATGACATAGATGCTGCAGTAGATAGTTTCAAGAAAGCATTGGAGCTGGAGCCAAATGATGGAGGAATCAAAAACCAGCTTGCTGCTGCTAAAAAGAAGATTGCTGATAGACGTGAGAAGGAGAGAAAAGCATTTTCCAGGATGTTCCAAAGAAATCGGTAAAAGTTAGCACACTAGACCTGTAAGTAACTGGAGATCTTTGTGGAGTGGTATTTTTCTATTCACATTGTAAGTTGGCATTTAGAGATCATTTCCTCATGCCTGACCTTACGCTTCGAGTGTTGAAATTTGAAAGATGGGACTCAAAATGCATAGCGATTTGCTGTCTCTCTATATCTTTCGACAATACTTCTATGTATTGTGAGTCTCAACTTTCTTGTCCCTTGCATTCGAAAGGTTAGAGGGAAACAAAAGAGCTGTTGTGCATACTTTAACTTCCTTATTGTGATCACCCTCTTTTGTCCAT