| mature miRNA: AAGCTCAGGAGGGATAGCACC species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|160519515|gb|AM908819.1|AM908819 AM908819 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 6J3, mRNA sequ AAGCTCAGGAGGGATAGCACC EST sequence (targeted fragment marked with yellow): CTTGATATCGAATTCCATCAGGCAGAGGACGAGACAGAACGCAGAAAACACGCACACAGTCACGGAAGCTCTCGATCAATTTGAGAGCTAGCTGAGCACGATGATGAACCGAGCCAAGCTTCTTCAACGCGCTGCCAAGGTGGGCGCCGGAGCTCTGTTGGGCGGATCGGTGCTGACTGGCGTCACAGGTTTTAGCAGTGACCAGATCGAAGCGCTACACTACGGTTTTGACCACCAGGGCCCGCTGTCCTCGTTCGACTACGCCAGTGTGCGTCGTGGCTACCAGGTGTACCGCGAAGTGTGCGCGTCTTGCCACAGCTTAGATCGCATCTGCTTCCGCAACCTGGTGGGCGTGACCCACACGGAGGAGGAGCTTAAGGAAATTGCGGCCGACATTGACGTTGTCGACGGCCCCAACGACGAGGGTGAGATGTTCGAACGCCCCAGTAAGCTGTCAGACCCGCTTCCCAGACCGTACCCGAATGACGAGGCTGCCGCCGCCGCCAACAATGGTGCCATTCCTCCTGATCTTTCGCTAATGGCCAAGTCTCGCCACGCCGGCGCTGACTATCTGTTCGCGCTGCTGACGGGTTACGTGGACCCCCTGAGGGCATGGAACTGCTGCCTGGTCTGTATTACAACCCATACTTCGGTGGAGGTGCTATTGCCATGGAGCGTCAGCTGCA | |||||||||
gi|78747831|gb|DV624234.1|DV624234 93741.1 Cold Sweetening C Solanum tuberosum cDNA clone 93741 5', mRNA sequence AAGCTCAGGAGGGATAGCACC EST sequence (targeted fragment marked with yellow): AAAACGCGCCAAGTTGCGCAATTTAGCAGAAAGGGCGTAGATAAGGTAATTGTTGGATTTGCGTTGACTGATTGTGTTAACAGCCAATGAAAGAGGATTAGTTATATTTTGTTTGGAAGAAGAAGATATAATTTTTTTGTGATTTGGAAAGGGACCAAATTATGTTGTCTAAGGGTGAACATCAGACAGTCCCATTATCTGTGCTGTTGAAGCGTGAATTGGCCAATGAGAAGATTGAAAGTCCGGAGCTTTCTCATGGTCAAGCTAGTCAGAGCAAGAAAGGCGAAGATTTTACGTTTGTCAAGACAGAATGCCAAAGAGTTTTGGGTGATGGAGTAGCTACATATTCTGTTTTTGGATTATTTGATGGGCACAATGGGTCAGCGGCGGCTATATATTCTAAAGAAAATCTCTTGCAGAATGTCTTGAGTGCTATTCCTCCTGATCTTAGTAGAGATGAATGGGTTGCAGCACTGCCTAGAGCTTTGGTTGCAGGATTTGTCAAAACGGATAAAGATTTCCAAGAAAAAGCAAAAACCTCAGGGACAACAGTCACGTTTGTCATCAATTGAAGGATGGGTTGTAACAGTTGCATCAGTTGGCGATTCTCGATGCATACTTGAATCTGCTGAAGGCGGAATTTATTATCTATCAGCCGATCACAGACTTGATTGCAATGAAGAGGAGAGGGAACGTATAACAGCCTGTGGTGGGAGAAGTTGGTCGGCTTAATGCTGGTGGCGGTCAGGAGAATTGGTCCTTTGAGATGTGGGCCTTGGTTGAACTCCTGGGCTTCTCGGAGATCCATTGGGACAGATCTGCGATTGTTGGCGAATAATATAGTTCCTGTACCCTATGTTGAAGCAAGTAAAGCTAACAACAGCTGGGTGGAGGGGTACTTATTAGCAAGTGACGGCGTCCGGGA | |||||||||
gi|160519699|gb|AM907291.1|AM907291 AM907291 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 10G18, mRNA se AAGCTCAGGAGGGATAGCACC EST sequence (targeted fragment marked with yellow): AACGCAGAAAGACTCAAGCTCGACTCGCCGCAGCCTCACACGCACACAGTCACGGAAGCTCTCGATCAATTTGAGAGCTAGCTGAGCACGATGATGAACCGAGCCAAGCTTCTTCAACGCGCTGCCAAGGTGGGCGCCGGAGCTCTGTTGGGCGGATCGGTGCTGACTGGCGTCACAGGTTTTAGCAGTGACCAGATCGAAGCGCTACACTAAGGTTTTGACCACCAGGGCCCGCTGTCCTCGTTCGACTACGCCAGTGTGCGTCGTGGCTACCAGGTGTACCGCGAAGTGTGCGCGTCTTGCCACAGCTTAGATCGCATCTGCTTCCGCAACCTGGTGGGCGTGACCCACACGGAGGAGGAGCTTAAGGAAATTGCGGCCGACATTGACGTTGTCGACGGCCCCAACAACGAGGGTGAGATGTTCGAACGCCCCGGTAAGCTGTCAGACCCGCTTCCCAGACCGTACCCGAATGACGAGGCTGCCGCCGCCGCCAACAATGGTGCCATTCCTCCTGATCTTTCGC | |||||||||
gi|222418327|gb|FG548921.1|FG548921 FSPM1644 Mixed potato plant parts cDNA library Solanum tuberosum cDNA clone FSPM1644, mRNA s AAGCTCAGGAGGGATAGCACC EST sequence (targeted fragment marked with yellow): TAGACCAAGAAGCAATGGTGTTACAAATCATAGAGATTCATTTATATGAAGGTGATGAAATGAGGCATCAAGAGTCATCGTCGTGGTGACACATGCAGTGACGTTATCCTTTCTGAGCTTGTTCTTCTTATATTATTTTCTCATCTTTTAGAATTCTTGAACGATTGTTCAAGTTTTCTTGACCTTGCAAGTCCGTAACACTTTGTATAACCCTCAATCTTGCTAGGTTATGTAAAAGTTCTCGTATCTTTTCTATCCCTCCTGAGCTTCTTCTCGTAAAATATCAACCCTTTTCAATGGTTGAGGTGTATCACTTTTATGTTATATAGCGTG | |||||||||