miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ACGGTGGGATTTCTCCGGTGA
species: Solanum tuberosum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|221148070|gb|GH637866.1|GH637866 MiTFL30_13D03 Kuras, 8 week minituber Solanum tuberosum cDNA clone MiTFL30_13D03 5', mRNA se

ACGGTGGGATTTCTCCGGTGA
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TGCCATCCTAAAGGGGACGGT

EST sequence (targeted fragment marked with yellow):
TACACAAAAAAATGGCCTTAGCTCCAGCGCAGCTCTCTAAGCCCTTTTTTTCCACCAAACCCACATCACAAACGCCACTTTTCTCATTACCTGCTACCCAGAAGATTCAATCTCGGCGGTCGTCGTCCACCGTCCGATGCTCCGTCATCGTTGCACCATCGGCAACTGCATCCAAGGCATCAGCCAAGGTGAAGTCTGTTAAGGCAAGGCAGATCATAGATGGCAGGGGAAATCCTACCGTCGAGGTTGATCTGGTCACCGGCGATGATCTACTTTATCGATCGGCGGTTCCAAGTGGAGCTTCCACCGGGATCTATGAGGCATTGGAGCTCAGAGATGGTGACAAGAGCCTTTATGGTGGTAAAGGGGTCCTCAATGCT