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mature miRNA: CAACTTAGAGAAGTTTGATCA
species: Solanum tuberosum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|115275501|gb|EG013737.1|EG013737 SDBN005J07u SDBN Solanum tuberosum cDNA clone SDBN005J07, mRNA sequence 

CAACTTAGAGAAGTTTGATCA
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GTTGAATCTCTTCGAATCATT

EST sequence (targeted fragment marked with yellow):
AAATATTACACCTAAACTAAGATAGATAAGTGGAGGTTTCTTCCAAAGTACCAATAATATGGTGACACTTAGCTTGAAACTAGTCTTAATTAAATTCTTACCTTTAATACCATAATAATCAATCTTTCCAGATATGGAGATCAATCTGACAACCATTCAAAATCAAATGCCTCGAACTTGATTTTTTTCATTACTAAGCTTCTCTAAGTTGGGTGAGTTGGCTGATTTGAACCAATTTCTGCCATAATCTTTATTAGAACAACTTTTGAGACTTCTTGACCGCAACAGCCTTCGACCACAAAAGAATGAAACTCAACAACACGAGAGAAAAATGTTACAACTTTTTTCCAACAAATCGATATACATAAACAAGCAAATAACTTGCTTTAGTTTTAGAATTCAACAAACCACACTAAGGTATTCTGATGCAATTCAAAGAATTGCAAGAAGGGAGGAGTGGAGAAGCTTTGCCTTTGCGGATAGTCGGAGAAAATAAGAACCATTAAGGCTATTGCCCTAAGTGGCCGGAAAAGGCACGAGACACTTGCC