| mature miRNA: CAGCATCATCAAGATTCTCAT species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|40950843|gb|CK565269.1|CK565269 dor3rk3 Dor1 Solanum tuberosum cDNA, mRNA sequence CAGCATCATCAAGATTCTCAT EST sequence (targeted fragment marked with yellow): CCGGGCAGGTAGCAGGTGACTAGCTAACCCATGTTTACACTGCTGTGTTGAAACCGGACAATGATGTTCTTATCTTGGTTGACTGATAACAATACAAGAACGCTAACTTTCTCTCATCTGATGATCTTGAGCCACCACTCATTCCTGCTGAGACCATTCCAGACCCAGAAGACAAGAAGCCTGAGGACTGGGATGAGAGAGCCAAGATTCCAGACCCAGATGCTAAGAAACCTGATGATTGGGATGAGGATGCACCAATGGAAATTGAAGATGAGGAAGCCGAGAAGCCCGAAGGATGGTTGGATGATGAGCCTGAGGATGTTGATGATCCTGAGGCCACTAAGCCTGAAGATTGGGATGATGATGAGGATGGTGAATGGGAGGCTCCAAAGGTTGACAACCCAAAATGTGCAGAAGTTCCTGGTTGTGGGGAGTGGAAAAGACCAATGATCAGAAATCCAGCGTACCT | |||||||||
gi|126732944|gb|EL737986.1|EL737986 CE29 potato leaf and in vitro plantlets Solanum tuberosum cDNA, mRNA sequence CAGCATCATCAAGATTCTCAT EST sequence (targeted fragment marked with yellow): CGAGGATGTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAACCACAGCCTCGCCCACCTACTGCTGCAGAACTTTTAAGAGCATACTGTGCGTCTCGTGGTTATGTTGCTTCAAGTGGATTGCCTGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGGAAGCTGCCTCACTTTGAAATGCCTCCGGGAGAATTAGACGATGAAGCTAGTGAAGAGGAGGATGAAGTTGTTACAGAGGATGCTGATGGACCTATAATGTCTGGTTCTGATGAGGATGAGGATGATGATGATGATGATGAGGATGAGGATGAGGATGAGGATGATGAGGACATTA | |||||||||
gi|160520725|gb|AM907482.1|AM907482 AM907482 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 1M6, mRNA sequ CAGCATCATCAAGATTCTCAT EST sequence (targeted fragment marked with yellow): AAGCTTGATATCGAATTCCATCAGGCAGAGGACGAGACAGAACGCAGAAAAAGTAGAACCCAAAATCATGGGCCGCAAGAGAGACAGAACCCACTTCAATCGCCACGTCCCGTACTCCTTCCCCAAGCGCCGCCGTCCAACACCAATCACCGACGATCCATTGCCGGTGCCGGAAGACAACTCATCGTCCACCAAGCAACAGCCGGCTACTGTGGTGGTTATTGGGGTTCCTTCTGAATGCTCTGTGCTCGACATTAAATCTCGTTTTGAGATTTATGGATCCATCTCTCGAACTCGTATGGACCCTAATGGTCTCGCTCATATCACTTTCCGTTCCAATGATTCTGCCCTATCTGCTGTTGAAGCTGCCGAAGATTCATCTTTCCCCATTACTCTCCACTCCAAGCCTGTTCAGGTAATATGGGCAACTGACCATGCATCACAGTGGAAAGAAGGTGTGATGCGAAAGGATGAACTATCCACATCAACGGTTGCATCGAAGCTAGTTAAGGCAGAAGTGCCACTAAGTAGGCACGGAAGAAGTAATCGACTGGGATCAGCAATTGTGAATCCCCGAGATGAGGATAATGATAATGCTGGCGGTAATGTTCGTGCACATGTAGTACAAGGCTGGTTGAGCCTTACAAGGGTAGGGAAATTGTTGCCTA | |||||||||
gi|78749709|gb|DV626112.1|DV626112 96537.1 Cold Sweetening C Solanum tuberosum cDNA clone 96537 5', mRNA sequence CAGCATCATCAAGATTCTCAT EST sequence (targeted fragment marked with yellow): TGGAAACATGCCAAGAGTGAGGGACATGATGATTATGGACTTCTTGTTAGTGAGAAGGCTAGGAAATACGCCATTGTCAAGGAGCTTGACAATGTTGTTGACCTCAAAGATGGAACTGTGGTCTTTCAATATGAGGTTCGGCCTCCAGGATGGACTTGAAATGTGGTGGTGCTTACATTAAAATACCTCCGCCCCCAGGAAGCAGGTTGGACCGCAAAGGGTTTTGATTAACGAGTCCCCCTACACAATAATGTTTGGACCTGATAAATGCGGAGCCACAAACAAGGTGCACTTCATTTTGAAACACAAGAACCCTAAAAGTGGAGAATACGTTGAGCACCACCTCAAGTTTCCTCCTTCTGTACCAGCTGACAAGCTAACCCATGTTTACACTGCGGTGTTGAAACCGGACAATGATGTTCTTATCTTGGTTGACGGAGAAGAAAAGAAGAAGGCTAACATCCTCTCATCTGATGATTTTGAGCCACCACTCATTCCTGCTGAGACCATTCCAGACCCAGAAGACAAGAAGCCTGAGGACTGGGATGAGAGAGCCAAGATTCCAGACCCAGATGCTAAGAAACCTGATGATTGGGATGAGGATGCACCAATGGAAATTGAAGATGAGGAAGCCGAGAAGCCCGAAGGATGGTTGGATGATGAGCCTGAGGATGTTGATGATCCTGAGGGCACTAAGCCTGAAGATTGGGATGATGATGAGGATGGTGAATGGGAGGCTCCAAAGGTTGACAACCCAAAATGTGCAAAAGCTCCTGGTTGTGGGGAGTGGAAAAGACCAATGATCAGAAATCCAGCTACAAGGAAAATGGCACGCTCACTTATTGACAACCCCATTACAAGGTATTTGGAAGCCAAGAGATATCCCAATCCTGAC | |||||||||
gi|280982826|gb|GT888565.1|GT888565 A42B06-400 Potato tubers 24 h infected with Fusarium eumartii Solanum tuberosum cDNA clone A CAGCATCATCAAGATTCTCAT EST sequence (targeted fragment marked with yellow): CTTATTTTGTGTAAAATCCAAAAAATGATGGAACCCATAGCAAGAGAGACATGGAGATTGAATATCAATCTCAAGTTCCAATTTTGAGGCCAAGTATACATGCCAGAAGGGCAAAGATTACTGTGAAATTTCTGGACCTGTATGGATTAACGGTTGAAGGGAATGTTGATGATGTTGATGGGTCG | |||||||||