| mature miRNA: CTACTCCCTCCGTCCCATTTT species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|115273253|gb|EG011489.1|EG011489 SSBN003D20u SSBN Solanum tuberosum cDNA clone SSBN003D20, mRNA sequence CTACTCCCTCCGTCCCATTTT EST sequence (targeted fragment marked with yellow): GCTCGAGCGGCCGCTGCCAACCTACAATTTCTAGGCAGGAGACACTTTCTTCTGTCACTTTTCAGGTTTAATTTGCTCTCTTCTGTTACCATGTGTTTTTGGTTTTCTTGATTTCACTTTTCAGGTTTTGCTCTCTCCTAGTTTTAGTTTTAAAACAATTATCTCAAAATAAGTGTCGTCAATTCAAAATCAAAATGGATAACATTAAACGACGGTTAAAATGGGACGGAGGGAGTATTAACTTTGTGGTTGAAGAGATGGGAATTTGGAGAACTTGAGTAAATTCTCAGAAGGGAATTGAATGGAAAAATGAGAAAAGAAAGTTTCTGTTAATTCATAAGTAAAATTGTTTAGGTAGAAACTCTAGTGAGAGAAGGAAAAGGGGGAAAGGAAAAGGAAAAAAATAACAATCTTTTGCTATAGTATTTTAAACTGTTTTTGATCGAGTGTG | |||||||||
gi|115276609|gb|EG014845.1|EG014845 SDBN002D16u SDBN Solanum tuberosum cDNA clone SDBN002D16, mRNA sequence CTACTCCCTCCGTCCCATTTT EST sequence (targeted fragment marked with yellow): GCATGCTCGAGCGGCCGCTAACAAAAAAACATGCATTACAAGTAACTACTATCCATGCATATACTATTTTCAAAGTTTCATCTCCTCAATCATCTAGAGAATATATCTCTCCACATTGTTTTGAGGAAAGGAAGGACGAAGAGTGGGGGCTTTGTGTAAATAAGAAAACTTTTGAAGCTTTAAAATAATTGTCATTAACTTTGTTGGGATAGACCAAAAGGGAAAGTAAGACACTTAAATTGGGACGGATGGAGTATGTATTTACAAAGTAATGTACAGTTTACATTGGGAGACTTGATGAGTTTATACATCATATTCCTAACCTTTTTGTACCACATTCTGAACAGAACTTAGAGGTCTCTCTCAAGTAGGGAGCACCACATTCATCGCAGAACTTTGCAGGACTTGTAGGCATTATATGCATGCGTCCTCCTACATGGCCTAATTGTTGTAAGCAAGCCATGTGCGGAGAATTGGTTAGCGACTGCTGAGCATGAACAATTTCGGGCAAGTGAGACTGAGGGCCACATTGTTGATTGTGAGAGAAATGAGCTATATGTTGACT | |||||||||
gi|78748072|gb|DV624475.1|DV624475 94020.1 Cold Sweetening C Solanum tuberosum cDNA clone 94020 5', mRNA sequence CTACTCCCTCCGTCCCATTTT EST sequence (targeted fragment marked with yellow): GGATAGACCAAAAGGGAAAGTAAGACGCTTAAATTGGGACGGATGGAGTATGTATTTACAAAGTAATGTACAGTTTACATTGGGACTTGATGAGTTTATACATCATATTCCTAACCTTTTTGTACCACATTCTGAGCAGAACTTAGAGGTCTCTCTCAAGTAGGGAGTACCACATTCATCACAAAACTTCGCAGGACTTGTAGGCATTATATGCATGCGTCCTCCTACATGGCCTAATTGTTGTAAGCAAGCCATGTGCGGAGAATTAGTTAGCGACTGCTGAGCATGAACAATTTCGGGCAAGTGAGACTGAGGGCCACATTGTTGATTGTGAGAGAAATGAGCTATATGTTGACTTTGGTTGATATGGTGCTGGTGGTGACTCTGCTGAAGGGGATGAAATTGAGCCTGATGGACCAGAGGTTGCATTTGCTGCTTTGAGGTAGTCTGCTGACTATCTTCACTAACAGAGCGGTAGCTTTGACCTGCAGGTAATGAAGACGCGTTGTCCGTGCTGGTGAATGCTGAAAAACCAGTGATGTTGGAAATTGAGCTTGACGCACGTCTATACTTGTGTCTTGGAGCATAGAATTTGTAGTCTCTGGGGGATATAGTGACTTCATTTCGGCCAGTCATTCTTCTGAACCATTCTGCATCATCAATACATAAGCTAGTTGGTTTCTCCACAATGGCTAAACCATTAACCACGACAAACCGGACACGCTTCTCCTCCTT | |||||||||
gi|78748083|gb|DV624486.1|DV624486 94034.1 Cold Sweetening C Solanum tuberosum cDNA clone 94034 5', mRNA sequence CTACTCCCTCCGTCCCATTTT EST sequence (targeted fragment marked with yellow): GGATAGACCAAAAGGGAAAGTAAGACGCTTAAATTGGGACGGATGGAGTATGTATTTACAAAGTAATGTACAGTTAACATTGGGACTGAATGAGTTATACATCATATTCCTAACCTTTTGGTACCACATCCTGAGCAAAACTAAAAGGTCTCTCTCAAGTTAGGGAGTTACCACATTCATCACAAAATTTCGCAAGAACTTGTANGCATTATATGCATTGCGTCCTCCTACATTGGCCTAATTTGTTGTAAGCAAGCCAATGTGCGGAGAAATTAGTTAGCGACTGCTGAGCATGAACAATTTCGGGCAAGTGAGACTGAGGGCCACATTGTTGATTGTGAGAGAAATGAGCTATATGTTGACTTTGGTTGATATGGTGCTGGTGGTGACTCTGCTGAAGGGGATGAAATTGAGCCTGATGGACCAGAGGTTGCATTTGCTGCTTTGAGGTAGTCTGCTGACTATCTTCACTAACAGAGCGGTAGCTTTGACCTGCAGGTAATGAAGACGCGTTGTCCGTGCTGGTGAATGCTGAAAAACCAGTGATGTTGGAAATTGAGCTTGACGCACGTCTATACTTGTGTCTTGGAGCATAGAATTTGTAGTCTCTGGGGGATATAGTGACTTCATTTCGGCCAGTCATTCTTCTGAACCATTCTGCATCATCAATACATAAGCTAGTTGGTTTCTCCACAATGGCTAAACCATTAACCACGACAAACCGGACACGCTTCTCCTCTTGTATCACTAATTCAAGAAACCTTGCCCTTGTTTCAAAAGATGTAGCCAACTCCCGCCTTTTAAATATGCAAAGTCCTTTCCTAAGAAACTTTTTTGCAAGCTTTCTGT | |||||||||
gi|66839072|gb|DR037177.1|DR037177 48658.3 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 48658 3', mRNA sequence CTACTCCCTCCGTCCCATTTT EST sequence (targeted fragment marked with yellow): TGCAAGTTTTAGGTCAATTGACTAATTGAAAGATGAGGTAAGGGAAGACATCTTTTGAGATAGAGACCTAATCATCATACAATATGAAAACTTTTACAATATGGTGGAAGTGGGACAAATTTGAGCCTTTTGGCTATTGGGGCCTACTTTTTATTATCATATTTCCTCCATTCCATTTTACGCAACACTTTTCGGATTTTGACACTCAAACAAGTTTATTTTTTACCGTAAGTTTTTTCATAGATCTTTTAAACATTTTTGAATTATCAATTATTGTGACTTATAATATTTTTTACGTAGTTTACAAATATATAGATTTTATTTCAAAAAATTTAAAGATTCTATGTGCAAATTGCCGATCAAACTTAAATTGTTTGACTCTCGAAAAATAAAAGTGTCAAATAAATTGGGACGGAGGGAGTTTTGACAAGTGGGGTCTACTTTTCACACATGTGGAGGTGCTTTTGGCAAAGGAAGAAGATTGATGTGGTCAAAGGACAAAAAGATAGGCTAAATTTGGCAAAATGATATTGTATTATATTCTTGTAATTGGAGAAAGACTACTTTTTAGATGTTTTTATATTATA | |||||||||