| mature miRNA: TAGATGACCATCAACAAAC species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|115276553|gb|EG014789.1|EG014789 SDBN002G05u SDBN Solanum tuberosum cDNA clone SDBN002G05, mRNA sequence TAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): GCTCGAGCGGCCGCTGCAAACTTACCAAAAGATTCCAGGAGAAATAGAAAACGTTAACCTGAAGGCCCAGTAGAGTCAATGGGTGCATATGTGCTTGTAGCTGAGTTGATGGTAAAATATAAGTACTGTGTTGATGGTCATGTAGAAGAGTAAGAAGACCCACTGAGGTGCAGCTACTCTAATGAACAGCCTGGACAGTGGAGGACAGGATCTAGTTGGGTTTGCGGAGTCACTTTGGCAAAGCATTCAGATTCAACAGATATATAGCATTACCATTGGTTTTTGCCCTCCATGCAAGCACGCCGAGTAACAAGAATGCCTTCTTTAAGCTTCGAGGAGACACACGTCTTCAAGCATATTATACATGTATAGAANACATTCTTACGTAAAAACTTTGCACTCTGATGTAATAATAAATCATTCTATCGTGTCATGTGTAATAATAAATCATTCT | |||||||||
gi|78747139|gb|DV623542.1|DV623542 92989.1 Cold Sweetening C Solanum tuberosum cDNA clone 92989 5', mRNA sequence TAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): GTTCAAACCATGCATGAAGTGATCCTGGCAAGCAAGCTGACTGGAAATGATGATGTGTCTCGTTTGGATGATGACAGTGAACTTCATTTGCAGCCAGCTTCGTCTTCTACATCTGATGAACATGAACCCCCATTAGTTGGACCTGAGGAAATAGCAGCAGTTGCTTCACTCTGGACAGGCATTCCCCTTAAGCAGCTTACTGTTGATGAAAGAATGCTTCTGGTTGGTCTCGATGAGCAGCTTAAGAAAAGGGTTGTTGGTCAGGATGAGGCTGTTACATCTATTTGTCGGGCTGTTAAGAGATCCAGAACTGGCCTCAAACACCCAAATAGACCAATTTCGGCAATGCTCTTCTGTGGTCCTACTGGAGTTGGAAAATCTGAACTGGCTAAAGCTTTGGCAGCATCTTATTTTGGTTCTGAATCTGCCATGCTAAGATTGGATATGAGTGAATACATGGAGCGGCATACTGTGAGCAAGTTAATTGGATCGCCTCCCGGTTATGTAGGCTATGGAGAAGGAGGGACTCTTACTGAAGCTATCCGAAGAAAGCCCTTCACTGTAGTGCTGCTAGATGAGATTGAAAAGGCTCATCCCGACATATTCAATATTCTCCTTCAGTTGTTTGAAGATGGTCACCTAACAGACTCTCAGGTTTGATTTTAAATATTCCACGAGATAGATTGTAAAACTTGTCTCGAATAAATTTAACTGAAGAATTTATTTTATCCTTGGATCTTGGCATTGCTAATTATGGAACTTGATTCAACAGGGAAAGAAGAGTGTCCTTTTAAGAACGCCTTGAATAGTTATGACTTCTAAATGGTGGGGTTCGACAGCCATTGGTAAAGGGGTAGACA | |||||||||
gi|221147371|gb|GH639694.1|GH639694 MiTFL36_02F10 Kuras, 8 week minituber Solanum tuberosum cDNA clone MiTFL36_02F10 5', mRNA se TAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): TGAAAAAAATTGGTTTTGAAGATTAGTTACTAGTGGTGAAATTTGTTTTTTTTAAGGGGTAATTATGAAAATACGGCATTTTGAATCATAGACTATTGTTGGTGGAATGGAACAAAATTTTTTTTTATTGGATTAATGGGTTAATTTTATTTTTTTTGGTAAGTTTTTTGGGGTAAGAATAGATTTGATCCTATGTTTATTGATGTTCATCTTTAAGTTGTGGACTTCAATGAGGATGTAATGTACGTTTG | |||||||||
gi|222417162|gb|FG550417.1|FG550417 FSPM0914 Potato tubers challenged with stress by exposure to high intensity light (ca. 7000 TAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): AGAAATAAATATCATCGAGTAAATATTCGAGCTGTAAAGATTTGGGCACACCAAATTCTGGAAGGTCTAGTTTATTTGCATGAACATGATCCGCCAGTGATTCATCGAGACCTGAAGTGTGATAACATATTTGTTAATGGTCATCTTGGACAAGTGAAGATTGGGGACCTGGGATTGGCAGCAATTCTTCGTGGATCACAGAGAGCACACAGTGTTATAGGAACACCTGAGTTCATGGCACCAGAATTGTATGACGAGAACTATGATGAGCTTGTTGATGTATATTCGTTTGGCATGTGCATGTTGGAGATGCTTACTGGTGAATATCCATATAGTGAATGTGTTAACCCTGCACAAATATACAAGAAAGTGATCTCTGGTAAGAGGCCAAGGGCATTTTATAAAGTTCAAGACTTGGATGCACAAAGGTTTATTAGGAAATGCTTGGAACCAGCATCAAATAGATCATCAGCTAAAGAACTAATGCTTGATCCGTTCCTTGTGATTGATGATGCTGATAGTGAGTCAGTTACAATGATG | |||||||||
gi|115275780|gb|EG014016.1|EG014016 SDBN004J13u SDBN Solanum tuberosum cDNA clone SDBN004J13, mRNA sequence TAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): GCTCGAGCGGCCGCTCTCAAATTGAGTCCCATCATATTCTAGTAATGCAATAATTGCGTATTAGTAATTAGTAGTCGACTAACTACTATTCAACACTTTAGTAATTAGCGCGGACAAATTCAGTAGCTTAATTAAGATTAGTAATTGGAGAAGAGAACTGGATGAGGTCTTTGCTATTCTCAAATTGAGTCACGTCTTTTTCTGGTAATACAATAATTACGTCAATCCCATCTCCACTTAGATTATCCATAAACATGCAGGTGTTTGCAGTCCCATATACTGGAATTGTTACCCTGCTTGGCTTTCCCCATCCAAAATCCAAATTATTCAATGGGCAATTGCAAACACTGCTACTTCGATACAGCGGCCGCTTAGCAAAATCACGACCATTTACTAAGATATAAGAAAAAAACAATACAAGCTTGAGTTATGCGATGCTGGTGGAAGGAAACAAATATCCAATAACCAATGAAATTAGTTAAGGTGCAGAAGCCGGCACAAACACATCGACAGTAATAGTTAATGATCAAATAATCTTGGGATTAACATGAAGTGATGAAGATGTTTGTTGATGTTCATCTAATCATGGCATATTAATGGTTGCAAAAACTATGCCAAATGATATGATGAATAGATGACCATCAACAAACAAATTCATAACTACACAATTTTAGCATATATATACCTATATATACATGGA | |||||||||